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PDB: 40 件
4TKZ
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BU of 4tkz by Molmil
Crystal structure of phosphotransferase system component EIIA from Streptococcus agalactiae
分子名称: GLYCEROL, Putative uncharacterized protein gbs1890
著者Nakamichi, Y, Maruyama, Y, Oiki, S, Mikami, B, Murata, K, Hashimoto, W.
登録日2014-05-28
公開日2014-08-20
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of phosphotransferase system component EIIA from Streptococcus agalactiae
To Be Published
6M5Z
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BU of 6m5z by Molmil
Catalytic domain of GH30 xylanase C from Talaromyces cellulolyticus
分子名称: ACETATE ION, GH30 Xylanase C, GLYCEROL, ...
著者Nakamichi, Y, Watanabe, M, Inoue, H.
登録日2020-03-12
公開日2021-01-20
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Crystal structure of GH30-7 endoxylanase C from the filamentous fungus Talaromyces cellulolyticus.
Acta Crystallogr.,Sect.F, 76, 2020
6KRN
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BU of 6krn by Molmil
Crystal structure of GH30 xylanase B from Talaromyces cellulolyticus expressed by Pichia pastoris in complex with aldotriuronic acid
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 4-O-methyl-alpha-D-glucopyranuronic acid-(1-2)-beta-D-xylopyranose-(1-4)-beta-D-xylopyranose, Mating factor alpha,GH30 Xylanase B, ...
著者Nakamichi, Y, Watanabe, M, Inoue, H.
登録日2019-08-22
公開日2020-06-17
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.653 Å)
主引用文献Substrate recognition by a bifunctional GH30-7 xylanase B from Talaromyces cellulolyticus.
Febs Open Bio, 10, 2020
6KRL
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BU of 6krl by Molmil
Crystal structure of GH30 xylanase B from Talaromyces cellulolyticus expressed by Pichia pastoris
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, ...
著者Nakamichi, Y, Watanabe, M, Inoue, H.
登録日2019-08-22
公開日2020-06-17
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (1.601 Å)
主引用文献Substrate recognition by a bifunctional GH30-7 xylanase B from Talaromyces cellulolyticus.
Febs Open Bio, 10, 2020
6IUJ
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BU of 6iuj by Molmil
Crystal structure of GH30 xylanase B from Talaromyces cellulolyticus
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, GH30 Xylanase B, ...
著者Nakamichi, Y, Watanabe, M, Inoue, H.
登録日2018-11-28
公開日2019-01-30
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Structural and functional characterization of a bifunctional GH30-7 xylanase B from the filamentous fungusTalaromyces cellulolyticus.
J. Biol. Chem., 294, 2019
8JOR
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BU of 8jor by Molmil
Structure of an acyltransferase involved in mannosylerythritol lipid formation from Pseudozyma tsukubaensis in type A crystal
分子名称: Acyltransferase, PENTAETHYLENE GLYCOL
著者Nakamichi, Y, Saika, A, Watanabe, M, Fujii, T, Morita, T.
登録日2023-06-08
公開日2024-04-17
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献Structural identification of catalytic His158 of PtMAC2p from Pseudozyma tsukubaensis , an acyltransferase involved in mannosylerythritol lipids formation.
Front Bioeng Biotechnol, 11, 2023
8JOS
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BU of 8jos by Molmil
Structure of an acyltransferase involved in mannosylerythritol lipid formation from Pseudozyma tsukubaensis in type B crystal
分子名称: Acyltransferase, CHLORIDE ION, TRIETHYLENE GLYCOL
著者Nakamichi, Y, Saika, A, Watanabe, M, Fujii, T, Morita, T.
登録日2023-06-08
公開日2024-04-17
実験手法X-RAY DIFFRACTION (1.59 Å)
主引用文献Structural identification of catalytic His158 of PtMAC2p from Pseudozyma tsukubaensis , an acyltransferase involved in mannosylerythritol lipids formation.
Front Bioeng Biotechnol, 11, 2023
3VXD
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BU of 3vxd by Molmil
Crystal structure of unsaturated glucuronyl hydrolase mutant D115N from Streptcoccus agalactiae
分子名称: Putative uncharacterized protein gbs1889, SULFATE ION
著者Nakamichi, Y, Maruyama, Y, Mikami, B, Hashimoto, W, Murata, K.
登録日2012-09-11
公開日2012-10-03
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of unsaturated glucuronyl hydrolase mutant D115N from Streptcoccus agalactiae
To be Published
3ANK
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BU of 3ank by Molmil
Crystal structure of unsaturated glucuronyl hydrolase mutant D175N from Streptcoccus agalactiae complexed with dGlcA-GalNAc6S
分子名称: 1,2-ETHANEDIOL, 4-deoxy-alpha-L-threo-hex-4-enopyranuronic acid-(1-3)-2-acetamido-2-deoxy-6-O-sulfo-beta-D-galactopyranose, Putative uncharacterized protein gbs1889
著者Nakamichi, Y, Maruyama, Y, Mikami, B, Hashimoto, W, Murata, K.
登録日2010-09-02
公開日2010-10-06
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.02 Å)
主引用文献Structural determinants in streptococcal unsaturated glucuronyl hydrolase for recognition of glycosaminoglycan sulfate groups
J.Biol.Chem., 286, 2011
3ANI
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BU of 3ani by Molmil
Crystal structure of unsaturated glucuronyl hydrolase mutant D175N from Streptcoccus agalactiae
分子名称: Putative uncharacterized protein gbs1889
著者Nakamichi, Y, Maruyama, Y, Mikami, B, Hashimoto, W, Murata, K.
登録日2010-09-02
公開日2010-10-06
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural determinants in streptococcal unsaturated glucuronyl hydrolase for recognition of glycosaminoglycan sulfate groups
J.Biol.Chem., 286, 2011
3ANJ
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BU of 3anj by Molmil
Crystal structure of unsaturated glucuronyl hydrolase from Streptcoccus agalactiae
分子名称: Putative uncharacterized protein gbs1889
著者Nakamichi, Y, Maruyama, Y, Mikami, B, Hashimoto, W, Murata, K.
登録日2010-09-02
公開日2010-10-06
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Structural determinants in streptococcal unsaturated glucuronyl hydrolase for recognition of glycosaminoglycan sulfate groups
J.Biol.Chem., 286, 2011
3WUX
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BU of 3wux by Molmil
Crystal structure of unsaturated glucuronyl hydrolase mutant D115N/K370S from Streptococcus agalactiae
分子名称: 1,2-ETHANEDIOL, Unsaturated chondroitin disaccharide hydrolase
著者Nakamichi, Y, Oiki, S, Mikami, B, Murata, K, Hashimoto, W.
登録日2014-05-08
公開日2014-05-28
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.792 Å)
主引用文献Crystal structure of unsaturated glucuronyl hydrolase mutant D115N/K370S from Streptococcus agalactiae
to be published
3WIW
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BU of 3wiw by Molmil
Crystal structure of unsaturated glucuronyl hydrolase specific for heparin
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Glycosyl hydrolase family 88
著者Nakamichi, Y, Mikami, B, Murata, K, Hashimoto, W.
登録日2013-09-26
公開日2014-01-08
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Crystal structure of a bacterial unsaturated glucuronyl hydrolase with specificity for heparin.
J.Biol.Chem., 289, 2014
8HX6
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BU of 8hx6 by Molmil
Crystal structure of 4-amino-4-deoxychorismate synthase from Streptomyces venezuelae
分子名称: 4-amino-4-deoxychorismate synthase, D-MALATE, MAGNESIUM ION, ...
著者Nakamichi, Y, Watanabe, M.
登録日2023-01-04
公開日2023-10-18
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.14 Å)
主引用文献Structural basis for the allosteric pathway of 4-amino-4-deoxychorismate synthase.
Acta Crystallogr D Struct Biol, 79, 2023
8HX7
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BU of 8hx7 by Molmil
Crystal structure of 4-amino-4-deoxychorismate synthase from Streptomyces venezuelae co-crystallized with L-glutamine
分子名称: 4-amino-4-deoxychorismate synthase, CHLORIDE ION, MAGNESIUM ION, ...
著者Nakamichi, Y, Watanabe, M.
登録日2023-01-04
公開日2023-10-18
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Structural basis for the allosteric pathway of 4-amino-4-deoxychorismate synthase.
Acta Crystallogr D Struct Biol, 79, 2023
8HX9
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BU of 8hx9 by Molmil
Crystal structure of 4-amino-4-deoxychorismate synthase from Streptomyces venezuelae with chorismate
分子名称: (3R,4R)-3-[(1-carboxyethenyl)oxy]-4-hydroxycyclohexa-1,5-diene-1-carboxylic acid, 4-amino-4-deoxychorismate synthase, FORMIC ACID, ...
著者Nakamichi, Y, Watanabe, M.
登録日2023-01-04
公開日2023-10-18
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.03 Å)
主引用文献Structural basis for the allosteric pathway of 4-amino-4-deoxychorismate synthase.
Acta Crystallogr D Struct Biol, 79, 2023
8HX8
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BU of 8hx8 by Molmil
Crystal structure of 4-amino-4-deoxychorismate synthase from Streptomyces venezuelae co-crystallized with chorismate
分子名称: 4-amino-4-deoxychorismate synthase, MAGNESIUM ION, SUCCINIC ACID, ...
著者Nakamichi, Y, Watanabe, M.
登録日2023-01-04
公開日2023-10-18
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Structural basis for the allosteric pathway of 4-amino-4-deoxychorismate synthase.
Acta Crystallogr D Struct Biol, 79, 2023
8IDQ
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BU of 8idq by Molmil
Crystal structure of reducing-end xylose-releasing exoxylanase in GH30 from Talaromyces cellulolyticus with xylose
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, ...
著者Nakamichi, Y, Watanabe, M, Fujii, T, Inoue, H, Morita, T.
登録日2023-02-14
公開日2023-05-17
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structure of reducing-end xylose-releasing exoxylanase in subfamily 7 of glycoside hydrolase family 30.
Proteins, 91, 2023
8IDP
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BU of 8idp by Molmil
Crystal structure of reducing-end xylose-releasing exoxylanase in GH30 from Talaromyces cellulolyticus
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, DI(HYDROXYETHYL)ETHER, ...
著者Nakamichi, Y, Watanabe, M, Fujii, T, Inoue, H, Morita, T.
登録日2023-02-14
公開日2023-05-17
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of reducing-end xylose-releasing exoxylanase in subfamily 7 of glycoside hydrolase family 30.
Proteins, 91, 2023
5X70
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Crystal structure of Rice Dwarf Virus P5 in complex with a ssRNA oligomer
分子名称: RNA (5'-R(P*GP*GP*CP*AP*AP*A)-3'), mRNA capping enzyme P5
著者Nakamichi, Y, Higashiura, A, Nakagawa, A.
登録日2017-02-23
公開日2018-02-28
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Crystal structure of capping enzyme from Rice dwarf virus
To Be Published
5X6X
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BU of 5x6x by Molmil
Crystal structure of the capping enzyme P5 from Rice Dwarf Virus
分子名称: 1,2-ETHANEDIOL, mRNA capping enzyme P5
著者Nakamichi, Y, Higashiura, A, Nakagawa, A.
登録日2017-02-23
公開日2018-02-28
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure of the capping enzyme P5 from Rice Dwarf Virus
To Be Published
5X6Z
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BU of 5x6z by Molmil
Crystal structure of Rice Dwarf Virus P5 in complex with GTP and GDP
分子名称: GUANOSINE-5'-DIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, mRNA capping enzyme P5
著者Nakamichi, Y, Higashiura, A, Nakagawa, A.
登録日2017-02-23
公開日2018-02-28
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure of the capping enzyme P5 from Rice Dwarf Virus
To Be Published
5X6Y
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BU of 5x6y by Molmil
Crystal structure of Rice Dwarf Virus P5 in complex with S-adenosylmethionine
分子名称: 1,2-ETHANEDIOL, CITRATE ANION, S-ADENOSYLMETHIONINE, ...
著者Nakamichi, Y, Higashiura, A, Nakagawa, A.
登録日2017-02-23
公開日2018-02-28
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure of the capping enzyme P5 from Rice Dwarf Virus
To Be Published
5X71
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BU of 5x71 by Molmil
Crystal structure of Rice Dwarf Virus P5 in space group P212121
分子名称: GUANOSINE-5'-MONOPHOSPHATE, mRNA capping enzyme P5
著者Nakamichi, Y, Higashiura, A, Nakagawa, A.
登録日2017-02-23
公開日2018-02-28
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.568 Å)
主引用文献Crystal structure of the capping enzyme P5 from Rice Dwarf Virus
To Be Published
4MMH
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BU of 4mmh by Molmil
Crystal structure of heparan sulfate lyase HepC from Pedobacter heparinus
分子名称: CALCIUM ION, Heparinase III protein
著者Maruyama, Y, Nakamichi, Y, Mikami, B, Murata, K, Hashimoto, W.
登録日2013-09-09
公開日2014-01-29
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal Structure of Pedobacter heparinus Heparin Lyase Hep III with the Active Site in a Deep Cleft
Biochemistry, 53, 2014

 

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