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PDB: 132 件

1D2M
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UVRB PROTEIN OF THERMUS THERMOPHILUS HB8; A NUCLEOTIDE EXCISION REPAIR ENZYME
分子名称: EXCINUCLEASE ABC SUBUNIT B, SULFATE ION, octyl beta-D-glucopyranoside
著者Nakagawa, N, Sugahara, M, Masui, R, Kato, R, Fukuyama, K, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日1999-09-25
公開日2000-03-22
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of Thermus thermophilus HB8 UvrB protein, a key enzyme of nucleotide excision repair.
J.Biochem.(Tokyo), 126, 1999
3CM0
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Crystal structure of adenylate kinase from Thermus thermophilus HB8
分子名称: Adenylate kinase
著者Nakagawa, N, Kondo, N, Masui, R, Matsuda, Z, Iwamoto, I, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2008-03-20
公開日2008-09-23
最終更新日2024-08-14
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of adenylate kinase from Thermus thermophilus HB8.
To be Published
2YZO
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Crystal structure of uncharacterized conserved protein from Thermotoga maritima
分子名称: D-MALATE, Probable 2-phosphosulfolactate phosphatase
著者Nakagawa, N, Nakamura, Y, Bessho, Y, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-05-06
公開日2007-11-06
最終更新日2012-02-15
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Crystal structure of uncharacterized conserved protein from Thermotoga maritima
To be Published
2Z0M
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Crystal structure of hypothetical ATP-dependent RNA helicase from Sulfolobus tokodaii
分子名称: 337aa long hypothetical ATP-dependent RNA helicase deaD
著者Nakagawa, N, Kusano, S, Shirouzu, M, Chen, L, Fu, Z.-Q, Chrzas, J, Wang, B.-C, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-05-07
公開日2007-11-13
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of hypothetical ATP-dependent RNA helicase from Sulfolobus tokodaii
To be Published
2YYV
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Crystal structure of uncharacterized conserved protein from Thermotoga maritima
分子名称: Probable 2-phosphosulfolactate phosphatase
著者Nakagawa, N, Nakamura, Y, Bessho, Y, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-05-02
公開日2007-11-06
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Crystal structure of uncharacterized conserved protein from Thermotoga maritima
To be Published
2Z0J
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Crystal structure of uncharacterized conserved protein from Thermus thermophilus HB8
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, Putative uncharacterized protein TTHA1438
著者Nakagawa, N, Kukimoto-Niino, M, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-05-07
公開日2007-11-13
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Crystal structure of uncharacterized conserved protein from Thermus thermophilus HB8
To be Published
3W8N
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Open form structure of CMP kinase in complex with CMP from Thermus thermophilus HB8
分子名称: CYTIDINE-5'-MONOPHOSPHATE, Cytidylate kinase
著者Nakagawa, N, Mega, R, Masui, R, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2013-03-19
公開日2013-09-25
最終更新日2017-11-22
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of CMP kinase: insights into initial substrate recognition and reaction mechanisms
To be Published
3W90
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Crystal structure of CMP kinase from Thermus thermophilus HB8
分子名称: Cytidylate kinase
著者Nakagawa, N, Mega, R, Masui, R, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2013-03-22
公開日2013-09-25
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Crystal structure of CMP kinase: insights into initial substrate recognition and reaction mechanisms
To be Published
2YYH
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Crystal structure of Nudix family protein from Aquifex aeolicus
分子名称: 8-OXO-dGTPase domain
著者Nakagawa, N, Kishishita, S, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-04-30
公開日2007-11-06
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of Nudix family protein from Aquifex aeolicus
To be Published
2Z1A
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Crystal structure of 5'-nucleotidase precursor from Thermus thermophilus HB8
分子名称: 5'-nucleotidase, PHOSPHATE ION, THYMIDINE, ...
著者Nakagawa, N, Kishishita, S, Yokoyama, S, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-05-08
公開日2007-11-13
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Crystal structure of 5'-nucleotidase precursor from Thermus thermophilus HB8
To be Published
2PLR
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Crystal structure of dTMP kinase (st1543) from Sulfolobus Tokodaii Strain7
分子名称: 1,2-ETHANEDIOL, 2,3-DIHYDROXY-1,4-DITHIOBUTANE, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ...
著者Kanaujia, S.P, Jeyakanthan, J, Rafi, Z.A, Sekar, K, Nakagawa, N, Ebihara, A, Kuramitsu, S, Shinkai, A, Shiro, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-04-20
公開日2008-04-22
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal structure of dTMP kinase (st1543) from Sulfolobus Tokodaii Strain7
To be Published
5H45
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Crystal structure of the C-terminal Lon protease-like domain of Thermus thermophilus RadA/Sms
分子名称: DNA repair protein RadA
著者Inoue, M, Fukui, K, Fujii, Y, Nakagawa, N, Yano, T, Kuramitsu, S, Masui, R.
登録日2016-10-30
公開日2017-05-03
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献The Lon protease-like domain in the bacterial RecA paralog RadA is required for DNA binding and repair.
J. Biol. Chem., 292, 2017
2PCJ
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Crystal structure of ABC transporter (aq_297) From Aquifex Aeolicus VF5
分子名称: Lipoprotein-releasing system ATP-binding protein lolD, SULFITE ION
著者Jeyakanthan, J, Kanaujia, S.P, Vasuki Ranjani, C, Sekar, K, Nakagawa, N, Ebihara, A, Kuramitsu, S, Shinkai, A, Shiro, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-30
公開日2007-10-02
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structure of ABC transporter (aq_297) From Aquifex Aeolicus VF5
To be Published
2PBR
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Crystal structure of thymidylate kinase (aq_969) from Aquifex Aeolicus VF5
分子名称: SULFATE ION, Thymidylate kinase
著者Jeyakanthan, J, Kanaujia, S.P, Vasuki Ranjani, C, Sekar, K, Nakagawa, N, Ebihara, A, Kuramitsu, S, Shinkai, A, Shiro, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-29
公開日2007-10-02
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.96 Å)
主引用文献Crystal structure of thymidylate kinase (aq_969) from Aquifex Aeolicus VF5
To be Published
2PCL
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Crystal structure of ABC transporter with complex (aq_297) from aquifex aeolicus VF5
分子名称: 1,2-ETHANEDIOL, Lipoprotein-releasing system ATP-binding protein lolD, MAGNESIUM ION, ...
著者Jeyakanthan, J, Kanaujia, S.P, Rafi, Z.A, Sekar, K, Ebihara, A, Nakagawa, N, Kuramitsu, S, Shinkai, A, Shiro, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-03-30
公開日2007-10-02
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structure of ABC transporter with complex (aq_297) from aquifex aeolicus VF5
To be Published
8UQT
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Crystal structure of the Tree Shrew p53 tetramerization domain
分子名称: Cellular tumor antigen p53, SULFATE ION
著者Wahba, H.M, Sakaguchi, S, Nakagawa, N, Wada, J, Kamada, R, Sakaguchi, K, Omichinski, J.G.
登録日2023-10-24
公開日2023-12-20
実験手法X-RAY DIFFRACTION (1.16 Å)
主引用文献Highly Similar Tetramerization Domains from the p53 Protein of Different Mammalian Species Possess Varying Biophysical, Functional and Structural Properties.
Int J Mol Sci, 24, 2023
8UQS
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Crystal structure of the Opossum p53 tetramerization domain
分子名称: Cellular tumor antigen p53 (Fragment)
著者Wahba, H.M, Sakaguchi, S, Nakagawa, N, Wada, J, Kamada, R, Sakaguchi, K, Omichinski, J.G.
登録日2023-10-24
公開日2023-12-20
実験手法X-RAY DIFFRACTION (1.35 Å)
主引用文献Highly Similar Tetramerization Domains from the p53 Protein of Different Mammalian Species Possess Varying Biophysical, Functional and Structural Properties.
Int J Mol Sci, 24, 2023
5AWE
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BU of 5awe by Molmil
Crystal structure of a hypothetical protein, TTHA0829 from Thermus thermophilus HB8, composed of cystathionine-beta-synthase (CBS) and aspartate-kinase chorismate-mutase tyrA (ACT) domains
分子名称: Putative acetoin utilization protein, acetoin dehydrogenase
著者Nakabayashi, M, Shibata, N, Kanagawa, M, Nakagawa, N, Kuramitsu, S, Higuchi, Y.
登録日2015-07-03
公開日2016-05-18
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (2.45 Å)
主引用文献Crystal structure of a hypothetical protein, TTHA0829 from Thermus thermophilus HB8, composed of cystathionine-beta-synthase (CBS) and aspartate-kinase chorismate-mutase tyrA (ACT) domains.
Extremophiles, 20, 2016
5AVM
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BU of 5avm by Molmil
Crystal structures of 5-aminoimidazole ribonucleotide (AIR) synthetase, PurM, from Thermus thermophilus
分子名称: Phosphoribosylformylglycinamidine cyclo-ligase, SULFATE ION
著者Kanagawa, M, Baba, S, Watanabe, Y, Nakagawa, N, Ebihara, A, Sampei, G, Kawai, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2015-06-23
公開日2015-11-25
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structures and ligand binding of PurM proteins from Thermus thermophilus and Geobacillus kaustophilus
J.Biochem., 159, 2016
8UQR
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Crystal structure of the human p53 tetramerization domain
分子名称: Cellular tumor antigen p53
著者Wahba, H.M, Sakaguchi, S, Nakagawa, N, Wada, J, Kamada, R, Sakaguchi, K, Omichinski, J.G.
登録日2023-10-24
公開日2023-12-20
実験手法X-RAY DIFFRACTION (1.22 Å)
主引用文献Highly Similar Tetramerization Domains from the p53 Protein of Different Mammalian Species Possess Varying Biophysical, Functional and Structural Properties.
Int J Mol Sci, 24, 2023
3IEK
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Crystal Structure of native TTHA0252 from Thermus thermophilus HB8
分子名称: CITRATE ANION, Ribonuclease TTHA0252, SULFATE ION, ...
著者Ishikawa, H, Nakagawa, N, Kuramitsu, S, Yokoyama, S, Masui, R.
登録日2009-07-22
公開日2010-07-28
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Crystal Structure of native TTHA0252 from Thermus thermophilus HB8
To be Published
3IEL
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Crystal Structure of TTHA0252 from Thermus thermophilus HB8 complexed with UMP
分子名称: CITRATE ANION, Ribonuclease TTHA0252, SULFATE ION, ...
著者Ishikawa, H, Nakagawa, N, Kuramitsu, S, Yokoyama, S, Masui, R.
登録日2009-07-23
公開日2010-07-28
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.35 Å)
主引用文献Crystal Structure of TTHA0252 from Thermus thermophilus HB8 complexed with UMP
To be Published
3IE1
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Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA
分子名称: CITRATE ANION, RNA (5'-R(P*UP*UP*UP*U)-3'), Ribonuclease TTHA0252, ...
著者Ishikawa, H, Nakagawa, N, Kuramitsu, S, Yokoyama, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2009-07-22
公開日2009-08-04
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.85 Å)
主引用文献Crystal structure of H380A mutant TTHA0252 from Thermus thermophilus HB8 complexed with RNA
To be Published
3I7V
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Crystal structure of AP4A hydrolase complexed with AP4A (ATP) (aq_158) from Aquifex aeolicus Vf5
分子名称: 1,2-ETHANEDIOL, ADENOSINE-5'-TRIPHOSPHATE, AP4A hydrolase, ...
著者Jeyakanthan, J, Kanaujia, S.P, Nakagawa, N, Sekar, K, Kuramitsu, S, Shinkai, A, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2009-07-09
公開日2009-07-21
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Free and ATP-bound structures of Ap(4)A hydrolase from Aquifex aeolicus V5
Acta Crystallogr.,Sect.D, 66, 2010
2ISM
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Crystal structure of the putative oxidoreductase (glucose dehydrogenase) (TTHA0570) from thermus theromophilus HB8
分子名称: CALCIUM ION, CHLORIDE ION, Putative oxidoreductase
著者Jeyakanthan, J, Kanaujia, S.P, Vasuki Ranjani, C, Sekar, K, Ebihara, A, Shinkai, A, Nakagawa, N, Shimizu, N, Yamamoto, M, Kuramitsu, S, Shiro, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-10-18
公開日2007-11-13
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal Structure of the Putative Oxidoreductase (Glucose Dehydrogenase) (TTHA0570) from Thermus Theromophilus HB8
To be Published

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