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PDB: 58 件
1UHN
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The crystal structure of the calcium binding protein AtCBL2 from Arabidopsis thaliana
分子名称: CALCIUM ION, calcineurin B-like protein 2
著者Nagae, M, Nozawa, A, Koizumi, N, Sano, H, Hashimoto, H, Sato, M, Shimizu, T.
登録日2003-07-07
公開日2003-11-04
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献The Crystal Structure of the Novel Calcium-binding Protein AtCBL2 from Arabidopsis thaliana
J.Biol.Chem., 278, 2003
2EAB
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Crystal structure of 1,2-a-L-fucosidase from Bifidobacterium bifidum (apo form)
分子名称: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Alpha-fucosidase, ...
著者Nagae, M, Tsuchiya, A, Katayama, T, Yamamoto, K, Wakatsuki, S, Kato, R.
登録日2007-01-31
公開日2007-04-24
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.12 Å)
主引用文献Structural basis on the catalytic reaction mechanism of novel 1,2-alpha-L-fucosidase (AFCA) from Bifidobacterium bifidum
J.Biol.Chem., 282, 2007
2EAE
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Crystal structure of 1,2-a-L-fucosidase from Bifidobacterium bifidum in complexes with products
分子名称: Alpha-fucosidase, CALCIUM ION, alpha-L-fucopyranose, ...
著者Nagae, M, Tsuchiya, A, Katayama, T, Yamamoto, K, Wakatsuki, S, Kato, R.
登録日2007-01-31
公開日2007-04-24
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural basis on the catalytic reaction mechanism of novel 1,2-alpha-L-fucosidase (AFCA) from Bifidobacterium bifidum
J.Biol.Chem., 282, 2007
2EAC
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BU of 2eac by Molmil
Crystal structure of 1,2-a-L-fucosidase from Bifidobacterium bifidum in complex with deoxyfuconojirimycin
分子名称: (2S,3R,4S,5R)-2-METHYLPIPERIDINE-3,4,5-TRIOL, Alpha-fucosidase, CALCIUM ION
著者Nagae, M, Tsuchiya, A, Katayama, T, Yamamoto, K, Wakatsuki, S, Kato, R.
登録日2007-01-31
公開日2007-04-24
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural basis on the catalytic reaction mechanism of novel 1,2-alpha-L-fucosidase (AFCA) from Bifidobacterium bifidum
J.Biol.Chem., 282, 2007
2EAK
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BU of 2eak by Molmil
Crystal structure of human galectin-9 N-terminal CRD in complex with lactose
分子名称: (2S,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL, GLYCEROL, Galectin-9, ...
著者Nagae, M, Nakamura-Tsuruta, S, Nishi, N, Nakamura, T, Hirabayashi, J, Wakatsuki, S, Kato, R.
登録日2007-01-31
公開日2007-09-25
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (1.97 Å)
主引用文献Structural analysis of the human galectin-9 N-terminal carbohydrate recognition domain reveals unexpected properties that differ from the mouse orthologue.
J.Mol.Biol., 375, 2008
2EAL
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Crystal structure of human galectin-9 N-terminal CRD in complex with Forssman pentasaccharide
分子名称: 2-acetamido-2-deoxy-alpha-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose-(1-3)-beta-D-galactopyranose, Galectin-9
著者Nagae, M, Nakamura-Tsuruta, S, Nishi, N, Nakamura, T, Hirabayashi, J, Wakatsuki, S, Kato, R.
登録日2007-01-31
公開日2007-09-25
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Structural analysis of the human galectin-9 N-terminal carbohydrate recognition domain reveals unexpected properties that differ from the mouse orthologue.
J.Mol.Biol., 375, 2008
5ZIC
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Crystal structure of human GnT-V luminal domain in complex with acceptor sugar
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-6-thio-alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose, Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A
著者Nagae, M, Yamaguchi, Y.
登録日2018-03-14
公開日2018-08-01
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structure and mechanism of cancer-associated N-acetylglucosaminyltransferase-V.
Nat Commun, 9, 2018
5GZ9
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Crystal structure of catalytic domain of Protein O-mannosyl Kinase in complexes with AMP-PNP, Magnesium ions and glycopeptide
分子名称: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Protein O-mannose kinase, ...
著者Nagae, M, Yamaguchi, Y.
登録日2016-09-27
公開日2017-03-29
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献3D structural analysis of protein O-mannosyl kinase, POMK, a causative gene product of dystroglycanopathy.
Genes Cells, 22, 2017
5GZ8
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Crystal structure of catalytic domain of Protein O-mannosyl Kinase in ligand-free form
分子名称: Protein O-mannose kinase
著者Nagae, M, Yamaguchi, Y.
登録日2016-09-27
公開日2017-03-29
最終更新日2017-12-06
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献3D structural analysis of protein O-mannosyl kinase, POMK, a causative gene product of dystroglycanopathy.
Genes Cells, 22, 2017
6A48
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Crystal structure of reelin N-terminal region
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Reelin
著者Nagae, M, Takagi, J.
登録日2018-06-19
公開日2019-06-19
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural studies of reelin N-terminal region provides insights into a unique structural arrangement and functional multimerization.
J.Biochem., 169, 2021
5GU5
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Crystal structure of p24gamma2 GOLD domain determined by sulfur-SAD
分子名称: BROMIDE ION, Transmembrane emp24 domain-containing protein 5
著者Nagae, M, Yamaguchi, Y.
登録日2016-08-25
公開日2017-01-25
最終更新日2020-02-26
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystallographic analysis of murine p24 gamma 2 Golgi dynamics domain
Proteins, 85, 2017
5XFI
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Crystal structure of Calsepa lectin in complex with biantennary N-glycan
分子名称: 1,2-ETHANEDIOL, BENZOIC ACID, Lectin, ...
著者Nagae, M, Yamaguchi, Y.
登録日2017-04-10
公開日2017-10-18
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.653 Å)
主引用文献Distinct roles for each N-glycan branch interacting with mannose-binding type Jacalin-related lectins Orysata and Calsepa.
Glycobiology, 27, 2017
7F5K
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Crystal structure of TCR4-1 ectodomain
分子名称: T cell receptor alpha chain, T cell receptor beta chain
著者Nagae, M, Yamasaki, S.
登録日2021-06-22
公開日2022-06-22
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (3.0000298 Å)
主引用文献Symbiotic bacteria-dependent expansion of MR1-reactive T cells causes autoimmunity in the absence of Bcl11b.
Nat Commun, 13, 2022
5XFH
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Crystal structure of Orysata lectin in complex with biantennary N-glycan
分子名称: Salt stress-induced protein, beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose
著者Nagae, M, Yamaguchi, Y.
登録日2017-04-10
公開日2017-10-18
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.903 Å)
主引用文献Distinct roles for each N-glycan branch interacting with mannose-binding type Jacalin-related lectins Orysata and Calsepa.
Glycobiology, 27, 2017
5ZIB
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Crystal structure of human GnT-V luminal domain in apo form
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A
著者Nagae, M, Yamaguchi, Y.
登録日2018-03-14
公開日2018-08-01
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structure and mechanism of cancer-associated N-acetylglucosaminyltransferase-V.
Nat Commun, 9, 2018
7EA6
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Crystal structure of TCR-017 ectodomain
分子名称: T cell receptor 017 alpha chain, T cell receptor 017 beta chain
著者Nagae, M, Yamasaki, S.
登録日2021-03-06
公開日2021-10-13
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.18000245 Å)
主引用文献Identification of conserved SARS-CoV-2 spike epitopes that expand public cTfh clonotypes in mild COVID-19 patients.
J.Exp.Med., 218, 2021
7VMT
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Crystal structure of murine N-acetylglucosaminyl transferase IVa (GnT-IVa) lectin domain in unliganded form
分子名称: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A soluble form
著者Nagae, M.
登録日2021-10-09
公開日2022-06-15
最終更新日2022-07-27
実験手法X-RAY DIFFRACTION (1.95000637 Å)
主引用文献Discovery of a lectin domain that regulates enzyme activity in mouse N-acetylglucosaminyltransferase-IVa (MGAT4A).
Commun Biol, 5, 2022
5AZX
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Crystal structure of p24delta1 GOLD domain (native 1)
分子名称: SULFATE ION, Transmembrane emp24 domain-containing protein 10
著者Nagae, M, Yamaguchi, Y.
登録日2015-10-23
公開日2016-09-14
最終更新日2020-02-26
実験手法X-RAY DIFFRACTION (1.58 Å)
主引用文献3D Structure and Interaction of p24 beta and p24 delta Golgi Dynamics Domains: Implication for p24 Complex Formation and Cargo Transport
J.Mol.Biol., 428, 2016
5AVA
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Crystal structure of PHA-E lectin in complex with bisected glycan
分子名称: CALCIUM ION, Erythroagglutinin, MANGANESE (II) ION, ...
著者Nagae, M, Yamaguchi, Y.
登録日2015-06-12
公開日2016-04-27
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Atomic visualization of a flipped-back conformation of bisected glycans bound to specific lectins
Sci Rep, 6, 2016
5AV7
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Crystal structure of Calsepa lectin in complex with bisected glycan
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)][2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)]methyl alpha-D-mannopyranoside, Lectin
著者Nagae, M, Yamaguchi, Y.
登録日2015-06-12
公開日2016-04-27
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Atomic visualization of a flipped-back conformation of bisected glycans bound to specific lectins
Sci Rep, 6, 2016
5AZW
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Crystal structure of p24beta1 GOLD domain
分子名称: 1,2-ETHANEDIOL, Transmembrane emp24 domain-containing protein 2
著者Nagae, M, Yamaguchi, Y.
登録日2015-10-23
公開日2016-09-14
最終更新日2020-02-26
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献3D Structure and Interaction of p24 beta and p24 delta Golgi Dynamics Domains: Implication for p24 Complex Formation and Cargo Transport
J.Mol.Biol., 428, 2016
5AZY
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Crystal structure of p24delta1 GOLD domain (Native 2)
分子名称: 1,2-ETHANEDIOL, SULFATE ION, Transmembrane emp24 domain-containing protein 10
著者Nagae, M, Yamaguchi, Y.
登録日2015-10-23
公開日2016-09-14
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献3D Structure and Interaction of p24 beta and p24 delta Golgi Dynamics Domains: Implication for p24 Complex Formation and Cargo Transport
J.Mol.Biol., 428, 2016
2ZOT
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Crystal structure of human F-spondin reeler domain (fragment 1)
分子名称: Spondin-1
著者Nagae, M, Nogi, T, Takagi, J.
登録日2008-06-07
公開日2008-10-14
最終更新日2016-12-21
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structure of the F-spondin reeler domain reveals a unique beta-sandwich fold with a deformable disulfide-bonded loop
Acta Crystallogr.,Sect.D, 64, 2008
5B1X
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Crystal structure of human dendritic cell inhibitory receptor (DCIR) C-type lectin domain in complex with biantennary glycan
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose, C-type lectin domain family 4 member A, CALCIUM ION
著者Nagae, M, Yamaguchi, Y.
登録日2015-12-21
公開日2016-05-11
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.902 Å)
主引用文献Crystal structure of human dendritic cell inhibitory receptor C-type lectin domain reveals the binding mode with N-glycan
Febs Lett., 590, 2016
5B1W
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Crystal structure of human dendritic cell inhibitory receptor (DCIR) C-type lectin domain in ligand-free form
分子名称: C-type lectin domain family 4 member A, CALCIUM ION
著者Nagae, M, Yamaguchi, Y.
登録日2015-12-21
公開日2016-05-11
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (3.05 Å)
主引用文献Crystal structure of human dendritic cell inhibitory receptor C-type lectin domain reveals the binding mode with N-glycan
Febs Lett., 590, 2016

 

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