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PDB: 222 件

2OX1
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Archaeal Dehydroquinase
分子名称: 3-dehydroquinate dehydratase, GLYCEROL
著者Gallagher, D.T, Smith, N.N.
登録日2007-02-19
公開日2008-02-19
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.33 Å)
主引用文献Structure and lability of archaeal dehydroquinase.
Acta Crystallogr.,Sect.F, 64, 2008
1UEI
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Crystal structure of human uridine-cytidine kinase 2 complexed with a feedback-inhibitor, UTP
分子名称: URIDINE 5'-TRIPHOSPHATE, Uridine-cytidine kinase 2
著者Suzuki, N.N, Koizumi, K, Fukushima, M, Matsuda, A, Inagaki, F.
登録日2003-05-16
公開日2004-05-04
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structural basis for the specificity, catalysis, and regulation of human uridine-cytidine kinase
STRUCTURE, 12, 2004
1UDW
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Crystal structure of human uridine-cytidine kinase 2 complexed with a feedback-inhibitor, CTP
分子名称: CYTIDINE-5'-TRIPHOSPHATE, Uridine-cytidine kinase 2
著者Suzuki, N.N, Koizumi, K, Fukushima, M, Matsuda, A, Inagaki, F.
登録日2003-05-07
公開日2004-05-04
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structural basis for the specificity, catalysis, and regulation of human uridine-cytidine kinase
STRUCTURE, 12, 2004
1UGM
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Crystal Structure of LC3
分子名称: Microtubule-associated proteins 1A/1B light chain 3
著者Sugawara, K, Suzuki, N.N, Fujioka, Y, Mizushima, N, Ohsumi, Y, Inagaki, F.
登録日2003-06-16
公開日2004-07-06
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献The crystal structure of microtubule-associated protein light chain 3, a mammalian homologue of Saccharomyces cerevisiae Atg8
Genes Cells, 9, 2004
2KWC
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The NMR structure of the autophagy-related protein Atg8
分子名称: Autophagy-related protein 8
著者Kumeta, H, Watanabe, M, Nakatogawa, H, Yamaguchi, M, Ogura, K, Adachi, W, Fujioka, Y, Noda, N.N, Ohsumi, Y, Inagaki, F.
登録日2010-04-05
公開日2010-05-12
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献The NMR structure of the autophagy-related protein Atg8
J.Biomol.Nmr, 47, 2010
2N5L
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Regnase-1 C-terminal domain
分子名称: Ribonuclease ZC3H12A
著者Yokogawa, M, Tsushima, T, Noda, N.N, Kumeta, H, Adachi, W, Enokizono, Y, Yamashita, K, Standley, D.M, Takeuchi, O, Akira, S, Inagaki, F.
登録日2015-07-18
公開日2016-03-16
最終更新日2024-05-15
実験手法SOLUTION NMR
主引用文献Structural basis for the regulation of enzymatic activity of Regnase-1 by domain-domain interactions
Sci Rep, 6, 2016
7VHQ
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Structural insights into the membrane microdomain organization by SPFH family proteins
分子名称: ATP-dependent zinc metalloprotease FtsH, Modulator of FtsH protease HflC, Protein HflK
著者Ma, C.Y, Wang, C.K, Luo, D.Y, Yan, L, Yang, W.X, Li, N.N, Gao, N.
登録日2021-09-22
公開日2022-01-19
最終更新日2024-06-19
実験手法ELECTRON MICROSCOPY (3.27 Å)
主引用文献Structural insights into the membrane microdomain organization by SPFH family proteins.
Cell Res., 32, 2022
5XYL
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BU of 5xyl by Molmil
Solution Structure of Skp1 from Homo sapiens
分子名称: S-phase kinase-associated protein 1
著者Shukla, V.K, Kachariya, N.N, Bhattacharya, A, Dantu, S.C, Kumar, A.
登録日2017-07-09
公開日2018-07-11
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Structural and dynamics insight of the recognition of Fbox protein by Skp1
To Be Published
7VG7
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Plexin B1 extracellular fragment in complex with lasso-grafted PB1m6A9 peptide
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Plexin-B1, TRIETHYLENE GLYCOL, ...
著者Sugano, N.N, Hirata, K, Yamashita, K, Yamamoto, M, Arimori, T, Takagi, J.
登録日2021-09-14
公開日2022-08-17
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献De novo Fc-based receptor dimerizers differentially modulate PlexinB1 function.
Structure, 30, 2022
7VF3
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Plexin B1 extracellular fragment in complex with lasso-grafted PB1m7 peptide
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, DI(HYDROXYETHYL)ETHER, Plexin-B1, ...
著者Sugano, N.N, Hirata, K, Yamashita, K, Yamamoto, M, Arimori, T, Takagi, J.
登録日2021-09-10
公開日2022-08-17
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.29 Å)
主引用文献De novo Fc-based receptor dimerizers differentially modulate PlexinB1 function.
Structure, 30, 2022
5Z5H
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Crystal structure of a thermostable glycoside hydrolase family 43 {beta}-1,4-xylosidase from Geobacillus thermoleovorans IT-08 in complex with D-xylose
分子名称: Beta-xylosidase, CALCIUM ION, alpha-D-xylopyranose
著者Rohman, A, van Oosterwijk, N, Puspaningsih, N.N.T, Dijkstra, B.W.
登録日2018-01-18
公開日2018-04-25
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural basis of product inhibition by arabinose and xylose of the thermostable GH43 beta-1,4-xylosidase from Geobacillus thermoleovorans IT-08.
PLoS ONE, 13, 2018
5Z5D
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Crystal structure of a thermostable glycoside hydrolase family 43 {beta}-1,4-xylosidase from Geobacillus thermoleovorans IT-08
分子名称: Beta-xylosidase, CALCIUM ION, GLYCEROL
著者Rohman, A, van Oosterwijk, N, Puspaningsih, N.N.T, Dijkstra, B.W.
登録日2018-01-17
公開日2018-04-25
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural basis of product inhibition by arabinose and xylose of the thermostable GH43 beta-1,4-xylosidase from Geobacillus thermoleovorans IT-08.
PLoS ONE, 13, 2018
6AAG
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Crystal structure of budding yeast Atg8 complexed with the helical AIM of Hfl1.
分子名称: Transmembrane protein 184 homolog YKR051W,Autophagy-related protein 8
著者Yamasaki, A, Noda, N.N.
登録日2018-07-18
公開日2018-12-12
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.445 Å)
主引用文献Lipidation-independent vacuolar functions of Atg8 rely on its noncanonical interaction with a vacuole membrane protein
Elife, 7, 2018
6AAF
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Crystal structure of fission yeast Atg8 complexed with the helical AIM of Hfl1.
分子名称: Autophagy-related protein 8, Transmembrane protein 184 homolog C30D11.06c
著者Yamasaki, A, Noda, N.N.
登録日2018-07-18
公開日2018-12-12
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.197 Å)
主引用文献Lipidation-independent vacuolar functions of Atg8 rely on its noncanonical interaction with a vacuole membrane protein
Elife, 7, 2018
7W36
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Crystal structure of human Atg5 complexed with a stapled peptide
分子名称: Autophagy protein 5, Stapled ATG16L1-derived peptide
著者Kurata, I, Matoba, K, Noda, N.N.
登録日2021-11-25
公開日2022-09-21
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Targeting the ATG5-ATG16L1 Protein-Protein Interaction with a Hydrocarbon-Stapled Peptide Derived from ATG16L1 for Autophagy Inhibition.
J.Am.Chem.Soc., 144, 2022
7VHP
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BU of 7vhp by Molmil
Structural insights into the membrane microdomain organization by SPFH family proteins
分子名称: ATP-dependent zinc metalloprotease FtsH, Modulator of FtsH protease HflC, Protein HflK
著者Ma, C.Y, Wang, C.K, Luo, D.Y, Yan, L, Yang, W.X, Li, N.N, Gao, N.
登録日2021-09-22
公開日2022-03-23
最終更新日2024-06-19
実験手法ELECTRON MICROSCOPY (3.27 Å)
主引用文献Structural insights into the membrane microdomain organization by SPFH family proteins.
Cell Res., 32, 2022
7VED
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BU of 7ved by Molmil
Crystal structure of GABARAP fused to TEX264 LIR with S272D mutation
分子名称: SULFATE ION, Testis-expressed protein 264,Gamma-aminobutyric acid receptor-associated protein
著者Yamasaki, A, Noda, N.N.
登録日2021-09-08
公開日2022-03-30
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.02 Å)
主引用文献Phosphorylation by casein kinase 2 enhances the interaction between ER-phagy receptor TEX264 and ATG8 proteins.
Embo Rep., 23, 2022
7VEC
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BU of 7vec by Molmil
Crystal structure of GABARAP complexed with the TEX264 LIR phosphorylated at Ser271 and Ser272
分子名称: Gamma-aminobutyric acid receptor-associated protein, TEX264 phospho-LIR
著者Noda, N.N.
登録日2021-09-08
公開日2022-03-30
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Phosphorylation by casein kinase 2 enhances the interaction between ER-phagy receptor TEX264 and ATG8 proteins.
Embo Rep., 23, 2022
6A9J
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BU of 6a9j by Molmil
Crystal structure of the PE-bound N-terminal domain of Atg2
分子名称: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine, Endolysin,Autophagy-related protein 2
著者Osawa, T, Noda, N.N.
登録日2018-07-13
公開日2019-03-20
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Atg2 mediates direct lipid transfer between membranes for autophagosome formation.
Nat. Struct. Mol. Biol., 26, 2019
5Z5I
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BU of 5z5i by Molmil
Crystal structure of a thermostable glycoside hydrolase family 43 {beta}-1,4-xylosidase from Geobacillus thermoleovorans IT-08 in complex with L-arabinose and D-xylose
分子名称: Beta-xylosidase, CALCIUM ION, alpha-D-xylopyranose, ...
著者Rohman, A, van Oosterwijk, N, Puspaningsih, N.N.T, Dijkstra, B.W.
登録日2018-01-18
公開日2018-04-25
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural basis of product inhibition by arabinose and xylose of the thermostable GH43 beta-1,4-xylosidase from Geobacillus thermoleovorans IT-08.
PLoS ONE, 13, 2018
7W3O
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Crystal structure of human CYB5R3
分子名称: FLAVIN-ADENINE DINUCLEOTIDE, NADH-cytochrome b5 reductase 3 soluble form
著者Noda, N.N.
登録日2021-11-25
公開日2022-12-07
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.46 Å)
主引用文献The UFM1 system regulates ER-phagy through the ufmylation of CYB5R3.
Nat Commun, 13, 2022
5Z5F
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BU of 5z5f by Molmil
Crystal structure of a thermostable glycoside hydrolase family 43 {beta}-1,4-xylosidase from Geobacillus thermoleovorans IT-08 in complex with L-arabinose
分子名称: Beta-xylosidase, CALCIUM ION, beta-L-arabinofuranose
著者Rohman, A, van Oosterwijk, N, Puspaningsih, N.N.T, Dijkstra, B.W.
登録日2018-01-18
公開日2018-04-25
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural basis of product inhibition by arabinose and xylose of the thermostable GH43 beta-1,4-xylosidase from Geobacillus thermoleovorans IT-08.
PLoS ONE, 13, 2018
7W68
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human single hexameric Mcm2-7 complex
分子名称: DNA replication licensing factor MCM2, DNA replication licensing factor MCM3, DNA replication licensing factor MCM4, ...
著者Xu, N.N, Lin, Q.P, Liu, C.D, Tian, H.L, Xiang, Y, Zhu, G.
登録日2021-12-01
公開日2023-03-08
最終更新日2024-10-30
実験手法ELECTRON MICROSCOPY (4.4 Å)
主引用文献human single hexameric Mcm2-7 complex
To Be Published
6A9E
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Crystal structure of the N-terminal domain of Atg2
分子名称: Endolysin,Autophagy-related protein 2
著者Osawa, T, Noda, N.N.
登録日2018-07-13
公開日2019-03-20
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (3.205 Å)
主引用文献Atg2 mediates direct lipid transfer between membranes for autophagosome formation.
Nat. Struct. Mol. Biol., 26, 2019
7W3N
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Crystal structure of Ufm1 fused to UFBP1 UFIM
分子名称: UFBP1 peptide,Ubiquitin-fold modifier 1
著者Noda, N.N.
登録日2021-11-25
公開日2022-12-07
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献The UFM1 system regulates ER-phagy through the ufmylation of CYB5R3.
Nat Commun, 13, 2022

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