PDB Search results for query - Protein Data Bank Japan

PDB: 199 results

STRUCTURE OF ALCALIGENES FAECALIS NITRITE REDUCTASE AND A COPPER SITE MUTANT, M150E, THAT CONTAINS ZINC
Descriptor:	COPPER (II) ION, NITRITE REDUCTASE
Authors:	Murphy, M.E.P, Adman, E.T, Turley, S.
Deposit date:	1995-07-03
Release date:	1996-08-01
Last modified:	2024-02-14
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	Structure of Alcaligenes faecalis nitrite reductase and a copper site mutant, M150E, that contains zinc. Biochemistry, 34, 1995

1YEB

STRUCTURE DETERMINATION AND ANALYSIS OF YEAST ISO-2-CYTOCHROME C AND A COMPOSITE MUTANT PROTEIN
Descriptor:	CYTOCHROME C, HEME C, SULFATE ION
Authors:	Murphy, M.E.P, Brayer, G.D.
Deposit date:	1991-10-29
Release date:	1993-10-31
Last modified:	2021-03-03
Method:	X-RAY DIFFRACTION (1.95 Å)
Cite:	Structure determination and analysis of yeast iso-2-cytochrome c and a composite mutant protein. J.Mol.Biol., 227, 1992

1YEA

STRUCTURE DETERMINATION AND ANALYSIS OF YEAST ISO-2-CYTOCHROME C AND A COMPOSITE MUTANT PROTEIN
Descriptor:	CYTOCHROME C, HEME C, SULFATE ION
Authors:	Murphy, M.E.P, Brayer, G.D.
Deposit date:	1991-10-29
Release date:	1993-10-31
Last modified:	2021-03-03
Method:	X-RAY DIFFRACTION (1.9 Å)
Cite:	Structure determination and analysis of yeast iso-2-cytochrome c and a composite mutant protein. J.Mol.Biol., 227, 1992

1RAQ

THE STRUCTURE AND FUNCTION OF OMEGA LOOP A REPLACEMENTS IN CYTOCHROME C
Descriptor:	HEME C, REP A2 ISO-1-CYTOCHROME C, SULFATE ION
Authors:	Murphy, M.E.P, Brayer, G.D.
Deposit date:	1992-08-25
Release date:	1993-10-31
Last modified:	2021-03-03
Method:	X-RAY DIFFRACTION (1.9 Å)
Cite:	The structure and function of omega loop A replacements in cytochrome c. Protein Sci., 2, 1993

1RAP

THE STRUCTURE AND FUNCTION OF OMEGA LOOP A REPLACEMENTS IN CYTOCHROME C
Descriptor:	PROTOPORPHYRIN IX CONTAINING FE, REP A2 ISO-1-CYTOCHROME C, SULFATE ION
Authors:	Murphy, M.E.P, Brayer, G.D.
Deposit date:	1992-08-25
Release date:	1993-10-31
Last modified:	2017-11-29
Method:	X-RAY DIFFRACTION (2.25 Å)
Cite:	The structure and function of omega loop A replacements in cytochrome c. Protein Sci., 2, 1993

1NTD

STRUCTURE OF ALCALIGENES FAECALIS NITRITE REDUCTASE MUTANT M150E THAT CONTAINS ZINC
Descriptor:	COPPER (II) ION, NITRITE REDUCTASE
Authors:	Murphy, M.E.P, Adman, E.T, Turley, S.
Deposit date:	1995-07-03
Release date:	1996-11-08
Last modified:	2024-02-14
Method:	X-RAY DIFFRACTION (2.3 Å)
Cite:	Structure of Alcaligenes faecalis nitrite reductase and a copper site mutant, M150E, that contains zinc. Biochemistry, 34, 1995

1AQ8

STRUCTURE OF ALCALIGENES FAECALIS NITRITE REDUCTASE REDUCED WITH ASCORBATE
Descriptor:	COPPER (II) ION, NITRITE REDUCTASE
Authors:	Murphy, M.E.P, Adman, E.T, Turley, S.
Deposit date:	1997-08-07
Release date:	1998-02-25
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	Structure of nitrite bound to copper-containing nitrite reductase from Alcaligenes faecalis. Mechanistic implications. J.Biol.Chem., 272, 1997

1AS8

STRUCTURE OF NITRITE BOUND TO REDUCED ALCALIGENES FAECALIS NITRITE REDUCTASE AT CRYO TEMPERATURE
Descriptor:	COPPER (II) ION, NITRITE ION, NITRITE REDUCTASE
Authors:	Murphy, M.E.P, Adman, E.T, Turley, S.
Deposit date:	1997-08-13
Release date:	1998-02-25
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (1.85 Å)
Cite:	Structure of nitrite bound to copper-containing nitrite reductase from Alcaligenes faecalis. Mechanistic implications. J.Biol.Chem., 272, 1997

1AS7

STRUCTURE OF ALCALIGENES FAECALIS NITRITE REDUCTASE AT CRYO TEMPERATURE
Descriptor:	COPPER (II) ION, NITRITE REDUCTASE
Authors:	Murphy, M.E.P, Adman, E.T, Turley, S.
Deposit date:	1997-08-13
Release date:	1998-02-25
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	Structure of nitrite bound to copper-containing nitrite reductase from Alcaligenes faecalis. Mechanistic implications. J.Biol.Chem., 272, 1997

1AS6

STRUCTURE OF NITRITE BOUND TO OXIDIZED ALCALIGENES FAECALIS NITRITE REDUCTASE AT CRYO TEMPERATURE
Descriptor:	COPPER (II) ION, NITRITE ION, NITRITE REDUCTASE
Authors:	Murphy, M.E.P, Adman, E.T, Turley, S.
Deposit date:	1997-08-13
Release date:	1998-02-25
Last modified:	2024-05-22
Method:	X-RAY DIFFRACTION (1.8 Å)
Cite:	Structure of nitrite bound to copper-containing nitrite reductase from Alcaligenes faecalis. Mechanistic implications. J.Biol.Chem., 272, 1997

3E6S

Crystal structure of ferritin soaked with iron from Pseudo-nitzschia multiseries
Descriptor:	FE (III) ION, Ferritin, SULFATE ION
Authors:	Murphy, M.E.P, Arrieta, A.L.
Deposit date:	2008-08-15
Release date:	2008-11-25
Last modified:	2024-02-21
Method:	X-RAY DIFFRACTION (1.95 Å)
Cite:	Ferritin is used for iron storage in bloom-forming marine pennate diatoms. Nature, 457, 2009

5UJD

SbnI from Staphylococcus pseudintermedius
Descriptor:	FORMIC ACID, Siderophore biosynthesis protein SbnI
Authors:	Murphy, M.E.P, Verstraete, M.M.
Deposit date:	2017-01-17
Release date:	2018-01-24
Last modified:	2023-10-04
Method:	X-RAY DIFFRACTION (2.1 Å)
Cite:	The heme-sensitive regulator SbnI has a bifunctional role in staphyloferrin B production by Staphylococcus aureus . J.Biol.Chem., 294, 2019

5UJE

SbnI with C-terminal truncation from Staphylococcus aureus
Descriptor:	GLYCEROL, SbnI protein
Authors:	Murphy, M.E.P, Verstraete, M.M.
Deposit date:	2017-01-17
Release date:	2018-01-24
Last modified:	2020-12-30
Method:	X-RAY DIFFRACTION (2.5 Å)
Cite:	SbnI is a free serine kinase that generates O -phospho-l-serine for staphyloferrin B biosynthesis in Staphylococcus aureus . J.Biol.Chem., 293, 2018

2PP9

Nitrate bound wild type oxidized AfNiR
Descriptor:	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, COPPER (I) ION, ...
Authors:	Murphy, M.E.P, Tocheva, E.I.
Deposit date:	2007-04-28
Release date:	2008-04-01
Last modified:	2024-02-21
Method:	X-RAY DIFFRACTION (1.8 Å)
Cite:	Conserved active site residues limit inhibition of a copper-containing nitrite reductase by small molecules. Biochemistry, 47, 2008

3E6R

Crystal structure of apo-ferritin from Pseudo-nitzschia multiseries
Descriptor:	Ferritin, SULFATE ION
Authors:	Murphy, M.E.P, Arrieta, A.L.
Deposit date:	2008-08-15
Release date:	2008-11-25
Last modified:	2024-02-21
Method:	X-RAY DIFFRACTION (2.4 Å)
Cite:	Ferritin is used for iron storage in bloom-forming marine pennate diatoms. Nature, 457, 2009

3E13

Iron reconstituted ferric binding protein from Campylobacter jejuni
Descriptor:	FE (III) ION, Putative iron-uptake ABC transport system,periplasmic iron-binding protein
Authors:	Murphy, M.E.P, Tom-Yew, S.A.L, Bekker, E.G.
Deposit date:	2008-08-01
Release date:	2009-08-11
Last modified:	2023-08-30
Method:	X-RAY DIFFRACTION (1.6 Å)
Cite:	Small hinge motion by the anion-independent ferric binding protein from Campylobacter jejuni To be Published

4WCM

Crystal Structure of Cell Shape Determinant protein Csd4 Gln46His variant from Helicobacter pylori
Descriptor:	2,6-DIAMINOPIMELIC ACID, Conserved hypothetical secreted protein, IODIDE ION, ...
Authors:	Chan, A.C, Murphy, M.E.
Deposit date:	2014-09-05
Release date:	2014-12-24
Last modified:	2023-11-15
Method:	X-RAY DIFFRACTION (1.75 Å)
Cite:	Helical Shape of Helicobacter pylori Requires an Atypical Glutamine as a Zinc Ligand in the Carboxypeptidase Csd4. J.Biol.Chem., 290, 2015

4WCL

Crystal Structure of product bound Cell Shape Determinant protein Csd4 from Helicobacter pylori
Descriptor:	2,6-DIAMINOPIMELIC ACID, Conserved hypothetical secreted protein, IODIDE ION, ...
Authors:	Chan, A.C, Murphy, M.E.
Deposit date:	2014-09-05
Release date:	2014-12-24
Last modified:	2023-11-15
Method:	X-RAY DIFFRACTION (1.85 Å)
Cite:	Helical Shape of Helicobacter pylori Requires an Atypical Glutamine as a Zinc Ligand in the Carboxypeptidase Csd4. J.Biol.Chem., 290, 2015

4WCN

Crystal Structure of Tripeptide bound Cell Shape Determinant Csd4 protein from Helicobacter pylori
Descriptor:	Conserved hypothetical secreted protein, IODIDE ION, N-acetyl-L-alanyl-N-[(1S,5R)-5-amino-1,5-dicarboxypentyl]-D-glutamine, ...
Authors:	Chan, A.C, Murphy, M.E.
Deposit date:	2014-09-05
Release date:	2014-12-24
Last modified:	2023-12-27
Method:	X-RAY DIFFRACTION (1.75 Å)
Cite:	Helical Shape of Helicobacter pylori Requires an Atypical Glutamine as a Zinc Ligand in the Carboxypeptidase Csd4. J.Biol.Chem., 290, 2015

4WCK

Crystal Structure of apo Cell Shape Determinant protein Csd4 from Helicobacter pylori
Descriptor:	2,6-DIAMINOPIMELIC ACID, Conserved hypothetical secreted protein, IODIDE ION
Authors:	Chan, A.C, Murphy, M.E.
Deposit date:	2014-09-05
Release date:	2014-12-24
Last modified:	2023-11-15
Method:	X-RAY DIFFRACTION (1.4 Å)
Cite:	Helical Shape of Helicobacter pylori Requires an Atypical Glutamine as a Zinc Ligand in the Carboxypeptidase Csd4. J.Biol.Chem., 290, 2015

4PO2

Crystal Structure of the Stress-Inducible Human Heat Shock Protein HSP70 Substrate-Binding Domain in Complex with Peptide Substrate
Descriptor:	HSP70 substrate peptide, Heat shock 70 kDa protein 1A/1B, PHOSPHATE ION, ...
Authors:	Zhang, P, Leu, J.I, Murphy, M.E, George, D.L, Marmorstein, R.
Deposit date:	2014-02-24
Release date:	2014-08-20
Last modified:	2024-02-28
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	Crystal structure of the stress-inducible human heat shock protein 70 substrate-binding domain in complex with Peptide substrate. Plos One, 9, 2014

8GKD

Crystal structure of the peptidoglycan O-acetylesterase Ape1 (amino acids 41-392) from Campylobacter jejuni
Descriptor:	ACETATE ION, SGNH hydrolase-type esterase domain-containing protein
Authors:	Lin, C.S, Murphy, M.E.
Deposit date:	2023-03-17
Release date:	2024-03-20
Method:	X-RAY DIFFRACTION (1.8 Å)
Cite:	Mechanism of the CBM35 domain in assisting catalysis by Ape1, a Campylobacter jejuni O-acetyl esterase To be published

8GLD

Crystal structure of the peptidoglycan O-acetylesterase Ape1 (amino acids 22-392) from Campylobacter jejuni
Descriptor:	ACETATE ION, SGNH hydrolase-type esterase domain-containing protein
Authors:	Lin, C.S, Murphy, M.E.
Deposit date:	2023-03-22
Release date:	2024-03-27
Method:	X-RAY DIFFRACTION (2.3 Å)
Cite:	Mechanism of the CBM35 domain in assisting catalysis by Ape1, a Campylobacter jejuni O-acetyl esterase To be published

6XJ6

Crystal structure of the helical cell shape determining protein Pgp2 from Campylobacter jejuni
Descriptor:	Pgp2
Authors:	Lin, C.S, Chan, A.C, Murphy, M.E.
Deposit date:	2020-06-23
Release date:	2021-03-17
Last modified:	2023-10-18
Method:	X-RAY DIFFRACTION (1.497 Å)
Cite:	Peptidoglycan binding by a pocket on the accessory NTF2-domain of Pgp2 directs helical cell shape of Campylobacter jejuni. J.Biol.Chem., 296, 2021

6XJ7

Crystal structure of the helical cell shape determining protein Pgp2 (K307A mutant) from Campylobacter jejuni
Descriptor:	Pgp2
Authors:	Lin, C.S, Chan, A.C, Murphy, M.E.
Deposit date:	2020-06-23
Release date:	2021-03-17
Last modified:	2023-10-18
Method:	X-RAY DIFFRACTION (1.85 Å)
Cite:	Peptidoglycan binding by a pocket on the accessory NTF2-domain of Pgp2 directs helical cell shape of Campylobacter jejuni. J.Biol.Chem., 296, 2021

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Total results:	199
Displayed results:	25
Sorted by:	Hit score (from highest)
Deposition authors:	"Murphy, M.E."