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PDB: 209 results

3E6S
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Crystal structure of ferritin soaked with iron from Pseudo-nitzschia multiseries
Descriptor: FE (III) ION, Ferritin, SULFATE ION
Authors:Murphy, M.E.P, Arrieta, A.L.
Deposit date:2008-08-15
Release date:2008-11-25
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Ferritin is used for iron storage in bloom-forming marine pennate diatoms.
Nature, 457, 2009
2AFN
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STRUCTURE OF ALCALIGENES FAECALIS NITRITE REDUCTASE AND A COPPER SITE MUTANT, M150E, THAT CONTAINS ZINC
Descriptor: COPPER (II) ION, NITRITE REDUCTASE
Authors:Murphy, M.E.P, Adman, E.T, Turley, S.
Deposit date:1995-07-03
Release date:1996-08-01
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of Alcaligenes faecalis nitrite reductase and a copper site mutant, M150E, that contains zinc.
Biochemistry, 34, 1995
1NTD
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STRUCTURE OF ALCALIGENES FAECALIS NITRITE REDUCTASE MUTANT M150E THAT CONTAINS ZINC
Descriptor: COPPER (II) ION, NITRITE REDUCTASE
Authors:Murphy, M.E.P, Adman, E.T, Turley, S.
Deposit date:1995-07-03
Release date:1996-11-08
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of Alcaligenes faecalis nitrite reductase and a copper site mutant, M150E, that contains zinc.
Biochemistry, 34, 1995
3E6R
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Crystal structure of apo-ferritin from Pseudo-nitzschia multiseries
Descriptor: Ferritin, SULFATE ION
Authors:Murphy, M.E.P, Arrieta, A.L.
Deposit date:2008-08-15
Release date:2008-11-25
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Ferritin is used for iron storage in bloom-forming marine pennate diatoms.
Nature, 457, 2009
1AQ8
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STRUCTURE OF ALCALIGENES FAECALIS NITRITE REDUCTASE REDUCED WITH ASCORBATE
Descriptor: COPPER (II) ION, NITRITE REDUCTASE
Authors:Murphy, M.E.P, Adman, E.T, Turley, S.
Deposit date:1997-08-07
Release date:1998-02-25
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of nitrite bound to copper-containing nitrite reductase from Alcaligenes faecalis. Mechanistic implications.
J.Biol.Chem., 272, 1997
1AS8
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STRUCTURE OF NITRITE BOUND TO REDUCED ALCALIGENES FAECALIS NITRITE REDUCTASE AT CRYO TEMPERATURE
Descriptor: COPPER (II) ION, NITRITE ION, NITRITE REDUCTASE
Authors:Murphy, M.E.P, Adman, E.T, Turley, S.
Deposit date:1997-08-13
Release date:1998-02-25
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structure of nitrite bound to copper-containing nitrite reductase from Alcaligenes faecalis. Mechanistic implications.
J.Biol.Chem., 272, 1997
1AS7
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BU of 1as7 by Molmil
STRUCTURE OF ALCALIGENES FAECALIS NITRITE REDUCTASE AT CRYO TEMPERATURE
Descriptor: COPPER (II) ION, NITRITE REDUCTASE
Authors:Murphy, M.E.P, Adman, E.T, Turley, S.
Deposit date:1997-08-13
Release date:1998-02-25
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure of nitrite bound to copper-containing nitrite reductase from Alcaligenes faecalis. Mechanistic implications.
J.Biol.Chem., 272, 1997
1RAQ
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BU of 1raq by Molmil
THE STRUCTURE AND FUNCTION OF OMEGA LOOP A REPLACEMENTS IN CYTOCHROME C
Descriptor: HEME C, REP A2 ISO-1-CYTOCHROME C, SULFATE ION
Authors:Murphy, M.E.P, Brayer, G.D.
Deposit date:1992-08-25
Release date:1993-10-31
Last modified:2021-03-03
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The structure and function of omega loop A replacements in cytochrome c.
Protein Sci., 2, 1993
1AS6
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BU of 1as6 by Molmil
STRUCTURE OF NITRITE BOUND TO OXIDIZED ALCALIGENES FAECALIS NITRITE REDUCTASE AT CRYO TEMPERATURE
Descriptor: COPPER (II) ION, NITRITE ION, NITRITE REDUCTASE
Authors:Murphy, M.E.P, Adman, E.T, Turley, S.
Deposit date:1997-08-13
Release date:1998-02-25
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structure of nitrite bound to copper-containing nitrite reductase from Alcaligenes faecalis. Mechanistic implications.
J.Biol.Chem., 272, 1997
1RAP
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BU of 1rap by Molmil
THE STRUCTURE AND FUNCTION OF OMEGA LOOP A REPLACEMENTS IN CYTOCHROME C
Descriptor: PROTOPORPHYRIN IX CONTAINING FE, REP A2 ISO-1-CYTOCHROME C, SULFATE ION
Authors:Murphy, M.E.P, Brayer, G.D.
Deposit date:1992-08-25
Release date:1993-10-31
Last modified:2017-11-29
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:The structure and function of omega loop A replacements in cytochrome c.
Protein Sci., 2, 1993
1YEB
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BU of 1yeb by Molmil
STRUCTURE DETERMINATION AND ANALYSIS OF YEAST ISO-2-CYTOCHROME C AND A COMPOSITE MUTANT PROTEIN
Descriptor: CYTOCHROME C, HEME C, SULFATE ION
Authors:Murphy, M.E.P, Brayer, G.D.
Deposit date:1991-10-29
Release date:1993-10-31
Last modified:2021-03-03
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structure determination and analysis of yeast iso-2-cytochrome c and a composite mutant protein.
J.Mol.Biol., 227, 1992
1YEA
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BU of 1yea by Molmil
STRUCTURE DETERMINATION AND ANALYSIS OF YEAST ISO-2-CYTOCHROME C AND A COMPOSITE MUTANT PROTEIN
Descriptor: CYTOCHROME C, HEME C, SULFATE ION
Authors:Murphy, M.E.P, Brayer, G.D.
Deposit date:1991-10-29
Release date:1993-10-31
Last modified:2021-03-03
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure determination and analysis of yeast iso-2-cytochrome c and a composite mutant protein.
J.Mol.Biol., 227, 1992
3HJH
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BU of 3hjh by Molmil
A rigid N-terminal clamp restrains the motor domains of the bacterial transcription-repair coupling factor
Descriptor: COBALT (II) ION, Transcription-repair-coupling factor
Authors:Murphy, M, Gong, P, Ralto, K, Manelyte, L, Savery, N, Theis, K.
Deposit date:2009-05-21
Release date:2009-10-20
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:An N-terminal clamp restrains the motor domains of the bacterial transcription-repair coupling factor Mfd.
Nucleic Acids Res., 37, 2009
4YJ0
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BU of 4yj0 by Molmil
Crystal structure of the DM domain of human DMRT1 bound to 25mer target DNA
Descriptor: DNA (25-MER), Doublesex- and mab-3-related transcription factor 1, ZINC ION
Authors:Murphy, M.W, Lee, J.K, Rojo, S, Gearhart, M.D, Kurahashi, K, Banerjee, S, Loeuille, G, Bashamboo, A, McElreavey, K, Zarkower, D, Aihara, H, Bardwell, V.J.
Deposit date:2015-03-02
Release date:2015-05-27
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (3.814 Å)
Cite:An ancient protein-DNA interaction underlying metazoan sex determination.
Nat.Struct.Mol.Biol., 22, 2015
2PP9
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BU of 2pp9 by Molmil
Nitrate bound wild type oxidized AfNiR
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ACETATE ION, COPPER (I) ION, ...
Authors:Murphy, M.E.P, Tocheva, E.I.
Deposit date:2007-04-28
Release date:2008-04-01
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Conserved active site residues limit inhibition of a copper-containing nitrite reductase by small molecules.
Biochemistry, 47, 2008
3E13
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Iron reconstituted ferric binding protein from Campylobacter jejuni
Descriptor: FE (III) ION, Putative iron-uptake ABC transport system,periplasmic iron-binding protein
Authors:Murphy, M.E.P, Tom-Yew, S.A.L, Bekker, E.G.
Deposit date:2008-08-01
Release date:2009-08-11
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Small hinge motion by the anion-independent ferric binding protein from Campylobacter jejuni
To be Published
5UJD
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SbnI from Staphylococcus pseudintermedius
Descriptor: FORMIC ACID, Siderophore biosynthesis protein SbnI
Authors:Murphy, M.E.P, Verstraete, M.M.
Deposit date:2017-01-17
Release date:2018-01-24
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The heme-sensitive regulator SbnI has a bifunctional role in staphyloferrin B production by Staphylococcus aureus .
J.Biol.Chem., 294, 2019
5UJE
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BU of 5uje by Molmil
SbnI with C-terminal truncation from Staphylococcus aureus
Descriptor: GLYCEROL, SbnI protein
Authors:Murphy, M.E.P, Verstraete, M.M.
Deposit date:2017-01-17
Release date:2018-01-24
Last modified:2020-12-30
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:SbnI is a free serine kinase that generates O -phospho-l-serine for staphyloferrin B biosynthesis in Staphylococcus aureus .
J.Biol.Chem., 293, 2018
4IN6
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BU of 4in6 by Molmil
(M)L214A mutant of the Rhodobacter sphaeroides Reaction Center
Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, ...
Authors:Saer, R.G, Hardjasa, A, Murphy, M.E.P, Beatty, J.T.
Deposit date:2013-01-04
Release date:2013-05-01
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Role of Rhodobacter sphaeroides Photosynthetic Reaction Center Residue M214 in the Composition, Absorbance Properties, and Conformations of HA and BA Cofactors.
Biochemistry, 52, 2013
4IN7
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BU of 4in7 by Molmil
(M)L214N mutant of the Rhodobacter sphaeroides Reaction Center
Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, ...
Authors:Saer, R.G, Hardjasa, A, Murphy, M.E.P, Beatty, J.T.
Deposit date:2013-01-04
Release date:2013-06-05
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Role of Rhodobacter sphaeroides photosynthetic reaction center residue M214 in the composition, absorbance properties, and conformations of H(A) and B(A) cofactors.
Biochemistry, 52, 2013
4IN5
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(M)L214G mutant of the Rhodobacter sphaeroides Reaction Center
Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, ...
Authors:Saer, R.G, Hardjasa, A, Murphy, M.E, Beatty, J.T.
Deposit date:2013-01-04
Release date:2013-05-01
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Role of Rhodobacter sphaeroides Photosynthetic Reaction Center Residue M214 in the Composition, Absorbance Properties, and Conformations of HA and BA Cofactors.
Biochemistry, 52, 2013
5D4H
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BU of 5d4h by Molmil
High-resolution nitrite complex of a copper nitrite reductase determined by synchrotron radiation crystallography
Descriptor: ACETIC ACID, COPPER (II) ION, Copper-containing nitrite reductase, ...
Authors:Fukuda, Y, Tse, K.M, Nakane, T, Nakatsu, T, Suzuki, M, Sugahara, M, Inoue, S, Masuda, T, Yumoto, F, Matsugaki, N, Nango, E, Tono, K, Joti, Y, Kameshima, T, Song, C, Hatsui, T, Yabashi, M, Nureki, O, Murphy, M.E.P, Inoue, T, Iwata, S, Mizohata, E.
Deposit date:2015-08-07
Release date:2016-03-09
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography
Proc.Natl.Acad.Sci.USA, 113, 2016
5D4J
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Chloride-bound form of a copper nitrite reductase from Alcaligenes faecals
Descriptor: ACETIC ACID, CHLORIDE ION, COPPER (II) ION, ...
Authors:Fukuda, Y, Tse, K.M, Nakane, T, Nakatsu, T, Suzuki, M, Sugahara, M, Inoue, S, Yumoto, F, Matsugaki, N, Nango, E, Tono, K, Joti, Y, Kameshima, T, Song, C, Yabashi, M, Nureki, O, Murphy, M.E.P, Inoue, T, Iwata, S, Mizohata, E.
Deposit date:2015-08-07
Release date:2016-03-09
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2 Å)
Cite:Redox-coupled proton transfer mechanism in nitrite reductase revealed by femtosecond crystallography
Proc.Natl.Acad.Sci.USA, 113, 2016
5D87
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Staphyloferrin B precursor biosynthetic enzyme SbnA Y152F/S185G variant
Descriptor: MAGNESIUM ION, POTASSIUM ION, PYRIDOXAL-5'-PHOSPHATE, ...
Authors:Kobylarz, M.J, Grigg, J.C, Liu, Y, Lee, M.S.F, Heinrichs, D.E, Murphy, M.E.P.
Deposit date:2015-08-15
Release date:2016-02-03
Last modified:2020-01-08
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Deciphering the Substrate Specificity of SbnA, the Enzyme Catalyzing the First Step in Staphyloferrin B Biosynthesis.
Biochemistry, 55, 2016
5D86
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Staphyloferrin B precursor biosynthetic enzyme SbnA Y152F variant
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, MAGNESIUM ION, PYRIDOXAL-5'-PHOSPHATE, ...
Authors:Kobylarz, M.J, Grigg, J.C, Liu, Y, Lee, M.S.F, Heinrichs, D.E, Murphy, M.E.P.
Deposit date:2015-08-15
Release date:2016-02-03
Last modified:2020-01-08
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Deciphering the Substrate Specificity of SbnA, the Enzyme Catalyzing the First Step in Staphyloferrin B Biosynthesis.
Biochemistry, 55, 2016

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数据于2024-07-24公开中

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