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PDB: 169 件

2CX6
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Crystal structure of ribonuclease inhibitor Barstar
分子名称: Hypothetical protein yhcO
著者Murayama, K, Kawazoe, M, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-06-28
公開日2005-12-28
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.43 Å)
主引用文献Crystal structure of ribonuclease inhibitor Barstar
To be Published
2CX8
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Crystal structure of methyltransferase with ligand(SAH)
分子名称: S-ADENOSYL-L-HOMOCYSTEINE, methyl transferase
著者Murayama, K, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-06-28
公開日2005-12-28
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.53 Å)
主引用文献Crystal structure of methyltransferase with ligand(SAH)
To be Published
2CX9
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Crystal structure of acyl-CoA dehydrogenase
分子名称: CHLORIDE ION, acyl-CoA dehydrogenase
著者Murayama, K, Kinebuchi, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-06-28
公開日2005-12-28
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of acyl-CoA dehydrogenase
To be Published
5Y7Z
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Complex structure of cyclin G-associated kinase with gefitinib
分子名称: Cyclin-G-associated kinase, Gefitinib, NANOBODY, ...
著者Ohbayashi, N, Murayama, K, Kato-Murayama, M, Shirouzu, M.
登録日2017-08-18
公開日2018-08-29
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.804 Å)
主引用文献Structural Basis for the Inhibition of Cyclin G-Associated Kinase by Gefitinib.
ChemistryOpen, 7, 2018
5Y80
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Complex structure of cyclin G-associated kinase with gefitinib
分子名称: Cyclin-G-associated kinase, Gefitinib, NANOBODY
著者Ohbayashi, N, Murayama, K, Kato-Murayama, M, Shirouzu, M.
登録日2017-08-18
公開日2018-08-29
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structural Basis for the Inhibition of Cyclin G-Associated Kinase by Gefitinib.
ChemistryOpen, 7, 2018
3QHE
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BU of 3qhe by Molmil
Crystal structure of the complex between the armadillo repeat domain of adenomatous polyposis coli and the tyrosine-rich domain of Sam68
分子名称: Adenomatous polyposis coli protein, KH domain-containing, RNA-binding, ...
著者Morishita, E.C.J, Murayama, K, Kato-Murayama, M, Ishizuku-Katsura, Y, Tomabechi, Y, Terada, T, Handa, N, Shirouzu, M, Akiyama, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2011-01-25
公開日2011-11-02
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structures of the armadillo repeat domain of adenomatous polyposis coli and its complex with the tyrosine-rich domain of sam68
Structure, 19, 2011
8I5L
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Crystal structure of P domain from norovirus GI.4 capsid protein in complex with broad specificity antibody single-chain Fv fragment CV-2F5.
分子名称: Capsid protein, scFv fragment
著者Kato-Murayama, M, Murayama, K, Shirouzu, M.
登録日2023-01-26
公開日2024-01-31
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structural analyses of the GI.4 norovirus by cryo-electron microscopy and X-ray crystallography revealing binding sites for human monoclonal antibodies.
J.Virol., 98, 2024
1J27
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Crystal structure of a hypothetical protein, TT1725, from Thermus thermophilus HB8 at 1.7A resolution
分子名称: hypothetical protein TT1725
著者Seto, A, Shirouzu, M, Terada, T, Murayama, K, Kuramitsu, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2002-12-26
公開日2003-12-02
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structure of a hypothetical protein, TT1725, from Thermus thermophilus HB8 at 1.7 A resolution
Proteins, 53, 2003
7JKV
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Crystal Structure of SARS-CoV-2 main protease in complex with an inhibitor GRL-2420
分子名称: 3C-like proteinase, N-[(2S)-1-({(1S,2S)-1-(1,3-benzothiazol-2-yl)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}amino)-4-methyl-1-oxopentan-2-yl]-4-methoxy-1H-indole-2-carboxamide, PENTAETHYLENE GLYCOL
著者Bulut, H, Hattori, S.I, Das, D, Murayama, K, Mitsuya, H.
登録日2020-07-29
公開日2020-09-23
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.25 Å)
主引用文献A small molecule compound with an indole moiety inhibits the main protease of SARS-CoV-2 and blocks virus replication.
Nat Commun, 12, 2021
1ZPW
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Crystal structure of a hypothetical protein TT1823 from Thermus thermophilus
分子名称: hypothetical protein TT1823
著者Ihsanawati, Murayama, K, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-05-18
公開日2005-11-18
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.64 Å)
主引用文献Crystal structure of a hypothetical protein TT1823 from Thermus thermophilus
To be Published
1Z54
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Crystal structure of a hypothetical protein TT1821 from Thermus thermophilus
分子名称: GLYCEROL, probable thioesterase
著者Ihsanawati, Kaminishi, T, Murayama, K, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-03-17
公開日2005-09-17
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure of a hypothetical protein TT1821 from Thermus thermophilus
TO BE PUBLISHED
2PSM
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Crystal structure of Interleukin 15 in complex with Interleukin 15 receptor alpha
分子名称: BENZAMIDINE, Interleukin-15, Interleukin-15 receptor alpha chain
著者Olsen, S.K, Murayama, K, Kishishita, S, Kukimoto-Niino, M, Terada, T, Shirouzu, M, Ota, N, Kanagawa, O, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-05-07
公開日2007-11-06
最終更新日2021-08-18
実験手法X-RAY DIFFRACTION (2.19 Å)
主引用文献Crystal Structure of the Interleukin-15{middle dot}Interleukin-15 Receptor {alpha} Complex: INSIGHTS INTO TRANS AND CIS PRESENTATION
J.Biol.Chem., 282, 2007
7YM0
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Lysoplasmalogen-specific phospholipase D (LyPls-PLD) with Ca2+
分子名称: CALCIUM ION, Lysoplasmalogenase
著者Yasutake, Y, Sakasegawa, S, Sugimori, D, Murayama, K.
登録日2022-07-27
公開日2023-01-04
実験手法X-RAY DIFFRACTION (2.91 Å)
主引用文献Structural basis for the substrate specificity switching of lysoplasmalogen-specific phospholipase D from Thermocrispum sp. RD004668.
Biosci.Biotechnol.Biochem., 87, 2022
3A3U
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BU of 3a3u by Molmil
Crystal structure of MqnD (TTHA1568), a menaquinone biosynthetic enzyme from Thermus thermophilus HB8
分子名称: 2-(2-(2-(2-(2-(2-ETHOXYETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHOXY)ETHANOL, L(+)-TARTARIC ACID, Menaquinone biosynthetic enzyme, ...
著者Arai, R, Nishino, A, Nagano, K, Uchikubo-Kamo, T, Katsura, K, Nishimoto, M, Toyama, M, Terada, T, Kuramitsu, S, Murayama, K, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2009-06-20
公開日2009-07-14
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Crystal structure of MqnD (TTHA1568), a menaquinone biosynthetic enzyme from Thermus thermophilus HB8.
J.Struct.Biol., 168, 2009
1UF3
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BU of 1uf3 by Molmil
Crystal structure of TT1561 of thermus thermophilus HB8
分子名称: CALCIUM ION, hypothetical protein TT1561
著者Kato-Murayama, M, Shirouzu, M, Terada, T, Murayama, K, Kuramitsu, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2003-05-23
公開日2003-11-23
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure of TT1561 of thermus thermophilus HB8
To be Published
7V3D
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BU of 7v3d by Molmil
Complex structure of serine hydroxymethyltransferase from Enterococcus faecium and its inhibitor
分子名称: (4R)-6-azanyl-4-[3-(hydroxymethyl)-5-phenyl-phenyl]-3-methyl-4-propan-2-yl-1H-pyrano[2,3-c]pyrazole-5-carbonitrile, CHLORIDE ION, PYRIDOXAL-5'-PHOSPHATE, ...
著者Hayashi, H, Murayama, K.
登録日2021-08-10
公開日2022-07-06
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.28 Å)
主引用文献Serine hydroxymethyltransferase as a potential target of antibacterial agents acting synergistically with one-carbon metabolism-related inhibitors.
Commun Biol, 5, 2022
1WEK
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BU of 1wek by Molmil
Crystal structure of the conserved hypothetical protein TT1465 from Thermus thermophilus HB8
分子名称: PHOSPHATE ION, hypothetical protein TT1465
著者Kukimoto-Niino, M, Murayama, K, Kato-Murayama, M, Terada, T, Shirouzu, M, Kuramitsu, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-05-25
公開日2004-11-25
最終更新日2014-11-12
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structures of possible lysine decarboxylases from Thermus thermophilus HB8
Protein Sci., 13, 2004
2Z8H
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Structure of mouse Bach1 BTB domain
分子名称: Transcription regulator protein BACH1
著者Ito, N, Murayama, K.
登録日2007-09-05
公開日2008-09-09
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Structure of mouse Bach1 BTB domain
To be Published
2CWK
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Crystal structure of nucleotide diphosphate kinase from Pyrococcus horikoshii
分子名称: nucleoside-diphosphate kinase
著者Kato-Murayama, M, Murayama, K, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-06-21
公開日2005-12-21
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Crystal structure of nucleotide diphosphate kinase from Pyrococcus horikoshii
To be Published
2DXA
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Crystal structure of trans editing enzyme ProX from E.coli
分子名称: CHLORIDE ION, Protein ybaK
著者Kato-Murayama, M, Murayama, K, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-08-25
公開日2007-02-25
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.58 Å)
主引用文献Crystal structure of trans editing enzyme ProX from E.coli
To be Published
2DYC
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BU of 2dyc by Molmil
Crystal structure of the N-terminal domain of mouse galectin-4
分子名称: Galectin-4
著者Kato-Murayama, M, Murayama, K, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-09-08
公開日2007-10-16
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Crystal structure of the N-terminal domain of mouse galectin-4
To be Published
2DXD
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Crystal structure of nucleoside diphosphate kinase in complex with ATP analog
分子名称: ADENOSINE MONOPHOSPHATE, CHLORIDE ION, Nucleoside diphosphate kinase
著者Kato-Murayama, M, Murayama, K, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-08-25
公開日2007-02-25
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.77 Å)
主引用文献Crystal structure of nucleoside diphosphate kinase in complex with ATP analog
To be Published
2DYA
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Crystal structure of complex between Adenine nucleotide and nucleoside diphosphate kinase
分子名称: ADENOSINE-5'-DIPHOSPHATE, CHLORIDE ION, MAGNESIUM ION, ...
著者Kato-Murayama, M, Murayama, K, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-09-08
公開日2007-03-08
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.77 Å)
主引用文献Crystal structure of complex between Adenine nucleotide and nucleoside diphosphate kinase
To be Published
2DXE
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Crystal structure of nucleoside diphosphate kinase in complex with GDP
分子名称: CHLORIDE ION, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
著者Kato-Murayama, M, Murayama, K, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-08-25
公開日2007-02-25
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structure of nucleoside diphosphate kinase in complex with GDP
To be Published
2CYE
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Crystal structure of Thioesterase complexed with coenzyme A and Zn from Thermus thermophilus HB8
分子名称: COENZYME A, Putative thioesterase, ZINC ION
著者Hosaka, T, Kato-Murayama, M, Murayama, K, Kishishita, S, Handa, N, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-07-06
公開日2006-01-06
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structure of the putative thioesterase protein TTHA1846 from Thermus thermophilus HB8 complexed with coenzyme A and a zinc ion.
Acta Crystallogr.,Sect.D, 65, 2009

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件を2024-06-19に公開中

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