3A1K
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![BU of 3a1k by Molmil](/molmil-images/mine/3a1k) | Crystal structure of Rhodococcus sp. N771 Amidase | Descriptor: | Amidase | Authors: | Ohtaki, A, Noguchi, K, Sato, Y, Murata, K, Odaka, M, Yohda, M. | Deposit date: | 2009-04-09 | Release date: | 2009-11-03 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.17 Å) | Cite: | Structure and characterization of amidase from Rhodococcus sp. N-771: Insight into the molecular mechanism of substrate recognition Biochim.Biophys.Acta, 1804, 2010
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3A1I
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![BU of 3a1i by Molmil](/molmil-images/mine/3a1i) | Crystal structure of Rhodococcus sp. N-771 Amidase complexed with Benzamide | Descriptor: | Amidase, BENZAMIDE | Authors: | Ohtaki, A, Noguchi, K, Sato, Y, Murata, K, Odaka, M, Yohda, M. | Deposit date: | 2009-04-03 | Release date: | 2009-10-27 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.32 Å) | Cite: | Structure and Characterization of Amidase from Rhodococcus sp. N-771: Insight into the Molecular Mechanism of Substrate Recognition Biochim.Biophys.Acta, 2009
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3VWO
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2ZAB
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![BU of 2zab by Molmil](/molmil-images/mine/2zab) | Crystal Structure of Family 7 Alginate Lyase A1-II' Y284F in Cmplex with Product (GGG) | Descriptor: | Alginate lyase, GLYCEROL, alpha-L-gulopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid | Authors: | Ogura, K, Yamasaki, M, Mikami, B, Hashimoto, W, Murata, K. | Deposit date: | 2007-10-02 | Release date: | 2008-05-27 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.66 Å) | Cite: | Substrate Recognition in Tunnel of Family 7 Alginate Lyase from Sphingomonas sp. A1 To be Published
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2ZAC
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![BU of 2zac by Molmil](/molmil-images/mine/2zac) | Crystal Structure of Family 7 Alginate Lyase A1-II' Y284F in Complex with Product (MMG) | Descriptor: | Alginate lyase, GLYCEROL, beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid | Authors: | Ogura, K, Yamasaki, M, Mikami, B, Hashimoto, W, Murata, K. | Deposit date: | 2007-10-02 | Release date: | 2008-05-27 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | Substrate Recognition in Tunnel of Family 7 Alginate Lyase from Sphingomonas sp. A1 To be Published
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2ZAA
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![BU of 2zaa by Molmil](/molmil-images/mine/2zaa) | Crystal Structure of Family 7 Alginate Lyase A1-II' H191N/Y284F in Complex with Substrate (GGMG) | Descriptor: | 4-deoxy-alpha-L-erythro-hex-4-enopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid, Alginate lyase, GLYCEROL | Authors: | Ogura, K, Yamasaki, M, Mikami, B, Hashimoto, W, Murata, K. | Deposit date: | 2007-10-02 | Release date: | 2008-05-27 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Substrate Recognition in Tunnel of Family 7 Alginate Lyase from Sphingomonas sp. A1 To be Published
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3VLU
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![BU of 3vlu by Molmil](/molmil-images/mine/3vlu) | Crystal structure of Sphingomonas sp. A1 alginate-binding protein AlgQ1 in complex with saturated trimannuronate | Descriptor: | AlgQ1, CALCIUM ION, beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid | Authors: | Nishitani, Y, Maruyama, Y, Itoh, T, Mikami, B, Hashimoto, W, Murata, K. | Deposit date: | 2011-12-05 | Release date: | 2012-01-25 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.55 Å) | Cite: | Recognition of heteropolysaccharide alginate by periplasmic solute-binding proteins of a bacterial ABC transporter Biochemistry, 51, 2012
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3A0N
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![BU of 3a0n by Molmil](/molmil-images/mine/3a0n) | Crystal structure of D-glucuronic acid-bound alginate lyase vAL-1 from Chlorella virus | Descriptor: | VAL-1, beta-D-glucopyranuronic acid | Authors: | Ogura, K, Yamasaki, M, Hashidume, T, Yamada, T, Mikami, B, Hashimoto, W, Murata, K. | Deposit date: | 2009-03-23 | Release date: | 2009-10-20 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (1.45 Å) | Cite: | Crystal structure of family 14 polysaccharide lyase with pH-dependent modes of action J.Biol.Chem., 284, 2009
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3VLV
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![BU of 3vlv by Molmil](/molmil-images/mine/3vlv) | Crystal structure of Sphingomonas sp. A1 alginate-binding ptotein AlgQ1 in complex with unsaturated triguluronate | Descriptor: | 4-deoxy-alpha-L-erythro-hex-4-enopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid, AlgQ1, CALCIUM ION | Authors: | Nishitani, Y, Maruyama, Y, Itoh, T, Mikami, B, Hashimoto, W, Murata, K. | Deposit date: | 2011-12-05 | Release date: | 2012-01-25 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | Recognition of heteropolysaccharide alginate by periplasmic solute-binding proteins of a bacterial ABC transporter Biochemistry, 51, 2012
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3WIW
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![BU of 3wiw by Molmil](/molmil-images/mine/3wiw) | Crystal structure of unsaturated glucuronyl hydrolase specific for heparin | Descriptor: | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Glycosyl hydrolase family 88 | Authors: | Nakamichi, Y, Mikami, B, Murata, K, Hashimoto, W. | Deposit date: | 2013-09-26 | Release date: | 2014-01-08 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.35 Å) | Cite: | Crystal structure of a bacterial unsaturated glucuronyl hydrolase with specificity for heparin. J.Biol.Chem., 289, 2014
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2ZA9
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![BU of 2za9 by Molmil](/molmil-images/mine/2za9) | Crystal Structure of Alginate lyase A1-II' N141C/N199C | Descriptor: | Alginate lyase, SULFATE ION | Authors: | Ogura, K, Yamasaki, M, Mikami, B, Hashimoto, W, Murata, K. | Deposit date: | 2007-10-02 | Release date: | 2008-05-27 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Substrate Recognition in Tunnel of Family 7 Alginate Lyase from Sphingomonas sp. A1 To be Published
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3AFO
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![BU of 3afo by Molmil](/molmil-images/mine/3afo) | Crystal Structure of Yeast NADH Kinase complexed with NADH | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, NADH kinase POS5 | Authors: | Ando, T, Ohashi, K, Ochiai, A, Miyagi, H, Kawai, S, Mikami, B, Murata, K. | Deposit date: | 2010-03-10 | Release date: | 2011-03-16 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | The structural factor conferring NADH kinase activity on yeast mitochondrial Pos5 To be Published
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2AHG
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![BU of 2ahg by Molmil](/molmil-images/mine/2ahg) | Unsaturated glucuronyl hydrolase mutant D88N with dGlcA-GalNAc | Descriptor: | 4-deoxy-alpha-L-threo-hex-4-enopyranuronic acid-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose, unsaturated glucuronyl hydrolase | Authors: | Itoh, T, Hashimoto, W, Mikami, B, Murata, K. | Deposit date: | 2005-07-28 | Release date: | 2006-08-15 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Crystal Structure of Unsaturated Glucuronyl Hydrolase Complexed with Substrate: MOLECULAR INSIGHTS INTO ITS CATALYTIC REACTION MECHANISM J.Biol.Chem., 281, 2006
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2Z42
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![BU of 2z42 by Molmil](/molmil-images/mine/2z42) | Crystal Structure of Family 7 Alginate Lyase A1-II' from Sphingomonas sp. A1 | Descriptor: | Alginate lyase, SULFATE ION | Authors: | Ogura, K, Yamasaki, M, Hashimoto, W, Mikami, B, Murata, K. | Deposit date: | 2007-06-12 | Release date: | 2008-05-27 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Substrate Recognition by Family 7 Alginagte Lyase from Sphingomonas sp. A1 To be published
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2AHF
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2D5J
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2E22
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![BU of 2e22 by Molmil](/molmil-images/mine/2e22) | Crystal structure of xanthan lyase in complex with mannose | Descriptor: | Xanthan lyase, alpha-D-mannopyranose | Authors: | Maruyama, Y, Mikami, B, Hashimoto, W, Murata, K. | Deposit date: | 2006-11-07 | Release date: | 2007-01-30 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | A Structural Factor Responsible for Substrate Recognition by Bacillus sp. GL1 Xanthan Lyase that Acts Specifically on Pyruvated Side Chains of Xanthan Biochemistry, 46, 2007
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2E24
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![BU of 2e24 by Molmil](/molmil-images/mine/2e24) | crystal structure of a mutant (R612A) of xanthan lyase | Descriptor: | DI(HYDROXYETHYL)ETHER, Xanthan lyase | Authors: | Maruyama, Y, Mikami, B, Hashimoto, W, Murata, K. | Deposit date: | 2006-11-07 | Release date: | 2007-01-30 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.15 Å) | Cite: | A Structural Factor Responsible for Substrate Recognition by Bacillus sp. GL1 Xanthan Lyase that Acts Specifically on Pyruvated Side Chains of Xanthan Biochemistry, 46, 2007
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2D8L
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![BU of 2d8l by Molmil](/molmil-images/mine/2d8l) | Crystal Structure of Unsaturated Rhamnogalacturonyl Hydrolase in complex with dGlcA-GalNAc | Descriptor: | 4-deoxy-alpha-L-threo-hex-4-enopyranuronic acid-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose, Putative glycosyl hydrolase yteR | Authors: | Itoh, T, Ochiai, A, Mikami, B, Hashimoto, W, Murata, K. | Deposit date: | 2005-12-06 | Release date: | 2006-11-14 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | A novel glycoside hydrolase family 105: the structure of family 105 unsaturated rhamnogalacturonyl hydrolase complexed with a disaccharide in comparison with family 88 enzyme complexed with the disaccharide J.Mol.Biol., 360, 2006
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2Z8R
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![BU of 2z8r by Molmil](/molmil-images/mine/2z8r) | Crystal structure of rhamnogalacturonan lyase YesW at 1.40 A resolution | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, YesW protein | Authors: | Ochiai, A, Itoh, T, Maruyama, Y, Kawamata, A, Mikami, B, Hashimoto, W, Murata, K. | Deposit date: | 2007-09-10 | Release date: | 2007-10-16 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (1.4 Å) | Cite: | A Novel Structural Fold in Polysaccharide Lyases: BACILLUS SUBTILIS FAMILY 11 RHAMNOGALACTURONAN LYASE YesW WITH AN EIGHT-BLADED -PROPELLER J.Biol.Chem., 282, 2007
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2ZYC
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![BU of 2zyc by Molmil](/molmil-images/mine/2zyc) | Crystal structure of peptidoglycan hydrolase from Sphingomonas sp. A1 | Descriptor: | PHOSPHATE ION, Peptidoglycan hydrolase FlgJ | Authors: | Ochiai, A, Mikami, B, Hashimoto, W, Murata, K. | Deposit date: | 2009-01-19 | Release date: | 2009-02-03 | Last modified: | 2024-05-29 | Method: | X-RAY DIFFRACTION (1.74 Å) | Cite: | Crystal structure of the glycosidase family 73 peptidoglycan hydrolase FlgJ Biochem.Biophys.Res.Commun., 381, 2009
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2Z8S
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![BU of 2z8s by Molmil](/molmil-images/mine/2z8s) | Crystal structure of rhamnogalacturonan lyase YesW complexed with digalacturonic acid | Descriptor: | CALCIUM ION, YesW protein, alpha-D-galactopyranuronic acid-(1-4)-alpha-D-galactopyranuronic acid | Authors: | Ochiai, A, Itoh, T, Maruyama, Y, Kawamata, A, Mikami, B, Hashimoto, W, Murata, K. | Deposit date: | 2007-09-10 | Release date: | 2007-10-16 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | A Novel Structural Fold in Polysaccharide Lyases: BACILLUS SUBTILIS FAMILY 11 RHAMNOGALACTURONAN LYASE YesW WITH AN EIGHT-BLADED -PROPELLER J.Biol.Chem., 282, 2007
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2ZUX
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![BU of 2zux by Molmil](/molmil-images/mine/2zux) | Crystal structure of rhamnogalacturonan lyase YesW complexed with rhamnose | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, YesW protein, ... | Authors: | Ochiai, A, Itoh, T, Mikami, B, Hashimoto, W, Murata, K. | Deposit date: | 2008-10-28 | Release date: | 2009-02-03 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.32 Å) | Cite: | Structural determinants responsible for substrate recognition and mode of action in family 11 polysaccharide lyases J.Biol.Chem., 284, 2009
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2ZBL
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![BU of 2zbl by Molmil](/molmil-images/mine/2zbl) | Functional annotation of Salmonella enterica yihS-encoded protein | Descriptor: | Putative isomerase, beta-D-mannopyranose | Authors: | Itoh, T, Mikami, B, Hashimoto, W, Murata, K. | Deposit date: | 2007-10-24 | Release date: | 2008-02-05 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.6 Å) | Cite: | Crystal structure of YihS in complex with D-mannose: structural annotation of Escherichia coli and Salmonella enterica yihS-encoded proteins to an aldose-ketose isomerase J.Mol.Biol., 377, 2008
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2ZUY
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![BU of 2zuy by Molmil](/molmil-images/mine/2zuy) | Crystal structure of exotype rhamnogalacturonan lyase YesX | Descriptor: | CALCIUM ION, YesX protein | Authors: | Ochiai, A, Itoh, T, Mikami, B, Hashimoto, W, Murata, K. | Deposit date: | 2008-10-28 | Release date: | 2009-02-03 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.65 Å) | Cite: | Structural determinants responsible for substrate recognition and mode of action in family 11 polysaccharide lyases J.Biol.Chem., 284, 2009
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