Loading
PDBj
English日本語简体中文繁體中文한국어
✖
ﾒﾆｭｰPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 137 件
5Z6B
DownloadVisualize
BU of 5z6b by Molmil
Crystal structure of sugar-binding protein YesO in complex with rhamnogalacturonan trisaccharide
分子名称: 2,6-anhydro-3-deoxy-L-threo-hex-2-enonic acid-(1-2)-[beta-D-galactopyranose-(1-4)]alpha-L-rhamnopyranose, Putative ABC transporter substrate-binding protein YesO
著者Sugiura, H, Oiki, S, Mikami, B, Murata, K, Hashimoto, W.
登録日2018-01-22
公開日2019-01-23
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.582 Å)
主引用文献Crystal structure of sugar-binding protein YesO in complex with rhamnogalacturonan trisaccharide
To Be Published
5Z6C
DownloadVisualize
BU of 5z6c by Molmil
Crystal structure of Bacillus subtilis sugar-binding protein YesO involved in import of rhamnogalacturonan
分子名称: Putative ABC transporter substrate-binding protein YesO
著者Sugiura, H, Oiki, S, Mikami, B, Murata, K, Hashimoto, W.
登録日2018-01-22
公開日2019-01-23
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.97 Å)
主引用文献Crystal structure of Bacillus subtilis sugar-binding protein YesO involved in import of rhamnogalacturonan
To Be Published
1VAV
DownloadVisualize
BU of 1vav by Molmil
Crystal structure of alginate lyase PA1167 from Pseudomonas aeruginosa at 2.0 A resolution
分子名称: Alginate lyase PA1167
著者Yamasaki, M, Moriwaki, S, Miyake, O, Hashimoto, W, Murata, K, Mikami, B.
登録日2004-02-19
公開日2004-05-25
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure and function of a hypothetical Pseudomonas aeruginosa protein PA1167 classified into family PL-7: a novel alginate lyase with a beta-sandwich fold.
J.Biol.Chem., 279, 2004
1VD5
DownloadVisualize
BU of 1vd5 by Molmil
Crystal Structure of Unsaturated Glucuronyl Hydrolase, Responsible for the Degradation of Glycosaminoglycan, from Bacillus sp. GL1 at 1.8 A Resolution
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 2,3-DIHYDROXY-1,4-DITHIOBUTANE, GLYCINE, ...
著者Itoh, T, Akao, S, Hashimoto, W, Mikami, B, Murata, K.
登録日2004-03-18
公開日2004-07-13
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal Structure of Unsaturated Glucuronyl Hydrolase, Responsible for the Degradation of Glycosaminoglycan, from Bacillus sp. GL1 at 1.8 A Resolution
J.Biol.Chem., 279, 2004
1WOQ
DownloadVisualize
BU of 1woq by Molmil
Crystal Structure of Inorganic Polyphosphate/ATP-Glucomannokinase From Arthrobacter sp. strain KM At 1.8 A Resolution
分子名称: Inorganic polyphosphate/ATP-glucomannokinase, PHOSPHATE ION, beta-D-glucopyranose
著者Mukai, T, Kawai, S, Mori, S, Mikami, B, Murata, K.
登録日2004-08-24
公開日2004-09-28
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal Structure of Bacterial Inorganic Polyphosphate/ATP-glucomannokinase: INSIGHTS INTO KINASE EVOLUTION
J.Biol.Chem., 279, 2004
1X1J
DownloadVisualize
BU of 1x1j by Molmil
Crystal Structure of Xanthan Lyase (N194A) with a Substrate.
分子名称: (4AR,6R,7S,8R,8AR)-8-((5R,6R)-3-CARBOXY-TETRAHYDRO-4,5,6-TRIHYDROXY-2H-PYRAN-2-YLOXY)-HEXAHYDRO-6,7-DIHYDROXY-2-METHYLPYRANO[3,2-D][1,3]DIOXINE-2-CARBOXYLIC ACID), CALCIUM ION, xanthan lyase
著者Maruyama, Y, Hashimoto, W, Mikami, B, Murata, K.
登録日2005-04-04
公開日2005-07-19
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal Structure of Bacillus sp. GL1 Xanthan Lyase Complexed with a Substrate: Insights into the Enzyme Reaction Mechanism
J.Mol.Biol., 350, 2005
1X1H
DownloadVisualize
BU of 1x1h by Molmil
Crystal Structure of Xanthan Lyase (N194A)
分子名称: xanthan lyase
著者Maruyama, Y, Hashimoto, W, Mikami, B, Murata, K.
登録日2005-04-04
公開日2005-07-19
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal Structure of Bacillus sp. GL1 Xanthan Lyase Complexed with a Substrate: Insights into the Enzyme Reaction Mechanism
J.Mol.Biol., 350, 2005
3VR0
DownloadVisualize
BU of 3vr0 by Molmil
Crystal structure of Pyrococcus furiosus PbaB, an archaeal proteasome activator
分子名称: GOLD ION, Putative uncharacterized protein
著者Kumoi, K, Satoh, T, Hiromoto, T, Mizushima, T, Kamiya, Y, Noda, M, Uchiyama, S, Murata, K, Yagi, H, Kato, K.
登録日2012-04-02
公開日2013-04-03
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献An archaeal homolog of proteasome assembly factor functions as a proteasome activator
Plos One, 8, 2013
1X1I
DownloadVisualize
BU of 1x1i by Molmil
Crystal Structure of Xanthan Lyase (N194A) Complexed with a Product
分子名称: (4AR,6R,7S,8R,8AS)-HEXAHYDRO-6,7,8-TRIHYDROXY-2-METHYLPYRANO[3,2-D][1,3]DIOXINE-2-CARBOXYLIC ACID, xanthan lyase
著者Maruyama, Y, Hashimoto, W, Mikami, B, Murata, K.
登録日2005-04-04
公開日2005-07-19
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal Structure of Bacillus sp. GL1 Xanthan Lyase Complexed with a Substrate: Insights into the Enzyme Reaction Mechanism
J.Mol.Biol., 350, 2005
4Z9X
DownloadVisualize
BU of 4z9x by Molmil
Crystal structure of 2-keto-3-deoxy-D-gluconate dehydrogenase from Streptococcus pyogenes
分子名称: Gluconate 5-dehydrogenase
著者Maruyama, Y, Takase, R, Oiki, S, Mikami, B, Murata, K, Hashimoto, W.
登録日2015-04-13
公開日2015-04-29
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural determinants in bacterial 2-keto-3-deoxy-D-gluconate dehydrogenase KduD for dual-coenzyme specificity
Proteins, 84, 2016
4ZA2
DownloadVisualize
BU of 4za2 by Molmil
Crystal structure of Pectobacterium carotovorum 2-keto-3-deoxy-D-gluconate dehydrogenase complexed with NAD+
分子名称: 2-deoxy-D-gluconate 3-dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
著者Takase, R, Maruyama, Y, Oiki, S, Mikami, B, Murata, K, Hashimoto, W.
登録日2015-04-13
公開日2015-04-29
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Structural determinants in bacterial 2-keto-3-deoxy-D-gluconate dehydrogenase KduD for dual-coenzyme specificity
Proteins, 84, 2016
7DN2
DownloadVisualize
BU of 7dn2 by Molmil
Acidic stable capsid structure of Helicobacter pylori bacteriophage KHP30
分子名称: Cement protein gp15, Major structural protein ORF14
著者Kamiya, R, Uchiyama, J, Matsuzaki, S, Murata, K, Iwasaki, K, Miyazaki, N.
登録日2020-12-08
公開日2021-10-27
最終更新日2024-05-29
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献Acid-stable capsid structure of Helicobacter pylori bacteriophage KHP30 by single-particle cryoelectron microscopy.
Structure, 30, 2022
7F2P
DownloadVisualize
BU of 7f2p by Molmil
The head structure of Helicobacter pylori bacteriophage KHP40
分子名称: Cement protein gp16, KHP40 MCP
著者Kamiya, R, Uchiyama, J, Matsuzaki, S, Murata, K, Iwasaki, K, Miyazaki, N.
登録日2021-06-13
公開日2021-10-27
最終更新日2022-02-23
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Acid-stable capsid structure of Helicobacter pylori bacteriophage KHP30 by single-particle cryoelectron microscopy.
Structure, 30, 2022
2CWS
DownloadVisualize
BU of 2cws by Molmil
Crystal structure at 1.0 A of alginate lyase A1-II', a member of polysaccharide lyase family-7
分子名称: GLYCEROL, SULFATE ION, alginate lyase A1-II'
著者Yamasaki, M, Ogura, K, Hashimoto, W, Mikami, B, Murata, K.
登録日2005-06-25
公開日2005-11-15
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1 Å)
主引用文献A Structural Basis for Depolymerization of Alginate by Polysaccharide Lyase Family-7
J.Mol.Biol., 352, 2005
7DOU
DownloadVisualize
BU of 7dou by Molmil
Trimeric cement protein structure of Helicobacter pylori bacteriophage KHP40
分子名称: Cement protein gp16
著者Kamiya, R, Uchiyama, J, Matsuzaki, S, Murata, K, Iwasaki, K, Miyazaki, N.
登録日2020-12-17
公開日2021-10-27
最終更新日2024-06-05
実験手法ELECTRON MICROSCOPY (3 Å)
主引用文献Acid-stable capsid structure of Helicobacter pylori bacteriophage KHP30 by single-particle cryoelectron microscopy.
Structure, 30, 2022
3WSC
DownloadVisualize
BU of 3wsc by Molmil
Crystal structure of alginate-binding protein Algp7
分子名称: Alginate-binding protein
著者Temtrirath, K, Murata, K, Hashimoto, W.
登録日2014-03-07
公開日2015-02-18
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.992 Å)
主引用文献Structural insights into alginate binding by bacterial cell-surface protein
Carbohydr.Res., 404C, 2014
3A1K
DownloadVisualize
BU of 3a1k by Molmil
Crystal structure of Rhodococcus sp. N771 Amidase
分子名称: Amidase
著者Ohtaki, A, Noguchi, K, Sato, Y, Murata, K, Odaka, M, Yohda, M.
登録日2009-04-09
公開日2009-11-03
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.17 Å)
主引用文献Structure and characterization of amidase from Rhodococcus sp. N-771: Insight into the molecular mechanism of substrate recognition
Biochim.Biophys.Acta, 1804, 2010
3A1I
DownloadVisualize
BU of 3a1i by Molmil
Crystal structure of Rhodococcus sp. N-771 Amidase complexed with Benzamide
分子名称: Amidase, BENZAMIDE
著者Ohtaki, A, Noguchi, K, Sato, Y, Murata, K, Odaka, M, Yohda, M.
登録日2009-04-03
公開日2009-10-27
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.32 Å)
主引用文献Structure and Characterization of Amidase from Rhodococcus sp. N-771: Insight into the Molecular Mechanism of Substrate Recognition
Biochim.Biophys.Acta, 2009
7E55
DownloadVisualize
BU of 7e55 by Molmil
Cryo-EM structure of alpha 7 homo-tetradecamer
分子名称: Proteasome subunit alpha type-3
著者Song, C, Murata, K.
登録日2021-02-17
公開日2021-05-05
最終更新日2021-05-19
実験手法ELECTRON MICROSCOPY (5.9 Å)
主引用文献Structural Fluctuations of the Human Proteasome alpha 7 Homo-Tetradecamer Double Ring Imply the Proteasomal alpha-Ring Assembly Mechanism.
Int J Mol Sci, 22, 2021
3VXD
DownloadVisualize
BU of 3vxd by Molmil
Crystal structure of unsaturated glucuronyl hydrolase mutant D115N from Streptcoccus agalactiae
分子名称: Putative uncharacterized protein gbs1889, SULFATE ION
著者Nakamichi, Y, Maruyama, Y, Mikami, B, Hashimoto, W, Murata, K.
登録日2012-09-11
公開日2012-10-03
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of unsaturated glucuronyl hydrolase mutant D115N from Streptcoccus agalactiae
To be Published
3VLW
DownloadVisualize
BU of 3vlw by Molmil
Crystal structure of Sphingomonas sp. A1 alginate-binding protein AlgQ1 in complex with mannuronate-guluronate disaccharide
分子名称: AlgQ1, CALCIUM ION, GLYCEROL, ...
著者Nishitani, Y, Maruyama, Y, Itoh, T, Mikami, B, Hashimoto, W, Murata, K.
登録日2011-12-05
公開日2012-01-25
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Recognition of heteropolysaccharide alginate by periplasmic solute-binding proteins of a bacterial ABC transporter
Biochemistry, 51, 2012
2Z42
DownloadVisualize
BU of 2z42 by Molmil
Crystal Structure of Family 7 Alginate Lyase A1-II' from Sphingomonas sp. A1
分子名称: Alginate lyase, SULFATE ION
著者Ogura, K, Yamasaki, M, Hashimoto, W, Mikami, B, Murata, K.
登録日2007-06-12
公開日2008-05-27
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Substrate Recognition by Family 7 Alginagte Lyase from Sphingomonas sp. A1
To be published
2ZAB
DownloadVisualize
BU of 2zab by Molmil
Crystal Structure of Family 7 Alginate Lyase A1-II' Y284F in Cmplex with Product (GGG)
分子名称: Alginate lyase, GLYCEROL, alpha-L-gulopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid
著者Ogura, K, Yamasaki, M, Mikami, B, Hashimoto, W, Murata, K.
登録日2007-10-02
公開日2008-05-27
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.66 Å)
主引用文献Substrate Recognition in Tunnel of Family 7 Alginate Lyase from Sphingomonas sp. A1
To be Published
2ZAC
DownloadVisualize
BU of 2zac by Molmil
Crystal Structure of Family 7 Alginate Lyase A1-II' Y284F in Complex with Product (MMG)
分子名称: Alginate lyase, GLYCEROL, beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid
著者Ogura, K, Yamasaki, M, Mikami, B, Hashimoto, W, Murata, K.
登録日2007-10-02
公開日2008-05-27
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Substrate Recognition in Tunnel of Family 7 Alginate Lyase from Sphingomonas sp. A1
To be Published
2ZA9
DownloadVisualize
BU of 2za9 by Molmil
Crystal Structure of Alginate lyase A1-II' N141C/N199C
分子名称: Alginate lyase, SULFATE ION
著者Ogura, K, Yamasaki, M, Mikami, B, Hashimoto, W, Murata, K.
登録日2007-10-02
公開日2008-05-27
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Substrate Recognition in Tunnel of Family 7 Alginate Lyase from Sphingomonas sp. A1
To be Published

220760

件を2024-06-05に公開中

PDB statisticsPDBj update infoContact PDBjnumon