3IM0
 
 | | Crystal structure of Chlorella virus vAL-1 soaked in 200mM D-glucuronic acid, 10% PEG-3350, and 200mM glycine-NaOH (pH 10.0) | | 分子名称: | VAL-1, beta-D-glucopyranuronic acid | | 著者 | Ogura, K, Yamasaki, M, Hashidume, T, Yamada, T, Mikami, B, Hashimoto, W, Murata, K. | | 登録日 | 2009-08-08 | | 公開日 | 2009-10-20 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (1.66 Å) | | 主引用文献 | Crystal structure of family 14 polysaccharide lyase with pH-dependent modes of action
J.Biol.Chem., 284, 2009
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4F10
 | | Alginate lyase A1-III H192A complexed with tetrasaccharide | | 分子名称: | 4-deoxy-alpha-L-erythro-hex-4-enopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid, Alginate lyase, alpha-L-gulopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid | | 著者 | Mikami, B, Ban, M, Suzuki, S, Yoon, H.-J, Miyake, O, Yamasaki, M, Ogura, K, Maruyama, Y, Hashimoto, W, Murata, K. | | 登録日 | 2012-05-05 | | 公開日 | 2012-06-27 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | | 主引用文献 | Induced-fit motion of a lid loop involved in catalysis in alginate lyase A1-III
Acta Crystallogr.,Sect.D, 68, 2012
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1J1N
 | | Structure Analysis of AlgQ2, A Macromolecule(Alginate)-Binding Periplasmic Protein Of Sphingomonas Sp. A1., Complexed with an Alginate Tetrasaccharide | | 分子名称: | AlgQ2, CALCIUM ION, beta-D-mannopyranuronic acid-(1-4)-alpha-D-mannopyranuronic acid-(1-4)-alpha-L-gulopyranuronic acid-(1-4)-alpha-D-mannopyranuronic acid | | 著者 | Momma, K, Mikami, B, Mishima, Y, Hashimoto, W, Murata, K. | | 登録日 | 2002-12-11 | | 公開日 | 2003-06-10 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | | 主引用文献 | Crystal structure of AlgQ2, a macromolecule (alginate)-binding protein of Sphingomonas sp. A1, complexed with an alginate tetrasaccharide at 1.6-A resolution
J.BIOL.CHEM., 278, 2003
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3K8W
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3K3T
 | | E185A mutant of peptidoglycan hydrolase from Sphingomonas sp. A1 | | 分子名称: | Peptidoglycan hydrolase FlgJ, SULFATE ION | | 著者 | Maruyama, Y, Ochiai, A, Itoh, T, Mikami, B, Hashimoto, W, Murata, K. | | 登録日 | 2009-10-04 | | 公開日 | 2010-07-14 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (1.75 Å) | | 主引用文献 | Mutational studies of the peptidoglycan hydrolase FlgJ of Sphingomonas sp. strain A1
J.Basic Microbiol., 50, 2010
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1FP3
 | | CRYSTAL STRUCTURE OF N-ACYL-D-GLUCOSAMINE 2-EPIMERASE FROM PORCINE KIDNEY | | 分子名称: | N-ACYL-D-GLUCOSAMINE 2-EPIMERASE | | 著者 | Itoh, T, Mikami, B, Maru, I, Ohta, Y, Hashimoto, W, Murata, K. | | 登録日 | 2000-08-30 | | 公開日 | 2000-11-22 | | 最終更新日 | 2024-03-13 | | 実験手法 | X-RAY DIFFRACTION (2 Å) | | 主引用文献 | Crystal structure of N-acyl-D-glucosamine 2-epimerase from porcine kidney at 2.0 A resolution.
J.Mol.Biol., 303, 2000
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1HV6
 | | CRYSTAL STRUCTURE OF ALGINATE LYASE A1-III COMPLEXED WITH TRISACCHARIDE PRODUCT. | | 分子名称: | 4-deoxy-alpha-L-erythro-hex-4-enopyranuronic acid-(1-4)-alpha-D-mannopyranuronic acid-(1-4)-alpha-D-glucopyranuronic acid, ALGINATE LYASE, SULFATE ION | | 著者 | Yoon, H.-J, Hashimoto, W, Miyake, O, Murata, K, Mikami, B. | | 登録日 | 2001-01-08 | | 公開日 | 2001-05-02 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (2 Å) | | 主引用文献 | Crystal structure of alginate lyase A1-III complexed with trisaccharide product at 2.0 A resolution.
J.Mol.Biol., 307, 2001
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6IUK
 | | Cryo-EM structure of Murine Norovirus capsid | | 分子名称: | Major capsid protein VP1 | | 著者 | Song, C, Miyazaki, N, Iwasaki, K, Katayama, K, Murata, K. | | 登録日 | 2018-11-28 | | 公開日 | 2020-02-26 | | 最終更新日 | 2024-03-27 | | 実験手法 | ELECTRON MICROSCOPY (3.5 Å) | | 主引用文献 | Dynamic rotation of the protruding domain enhances the infectivity of norovirus.
Plos Pathog., 16, 2020
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2FUZ
 | | UGL hexagonal crystal structure without glycine and DTT molecules | | 分子名称: | (4S)-2-METHYL-2,4-PENTANEDIOL, Unsaturated glucuronyl hydrolase | | 著者 | Itoh, T, Hashimoto, W, Mikami, B, Murata, K. | | 登録日 | 2006-01-28 | | 公開日 | 2006-05-30 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | | 主引用文献 | Substrate recognition by unsaturated glucuronyl hydrolase from Bacillus sp. GL1
Biochem.Biophys.Res.Commun., 344, 2006
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6JBO
 | | Crystal structure of EfeO-like protein Algp7 containing samarium ion | | 分子名称: | 1,2-ETHANEDIOL, Alginate-binding protein, CITRIC ACID | | 著者 | Okumura, K, Takase, R, Maruyama, Y, Mikami, B, Murata, K, Hashimoto, W. | | 登録日 | 2019-01-26 | | 公開日 | 2020-01-29 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (1.88 Å) | | 主引用文献 | Rare metal binding by a cell-surface component of bacterial EfeUOB iron importer
To Be Published
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6JBN
 | | Crystal structure of Sphingomonas sp. A1 peroxidase EfeB responsible for import of iron | | 分子名称: | 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, OXYGEN MOLECULE, ... | | 著者 | Okumura, K, Takase, R, Mikami, B, Murata, K, Hashimoto, W. | | 登録日 | 2019-01-26 | | 公開日 | 2020-01-29 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | | 主引用文献 | Rare metal binding by a cell-surface component of bacterial EfeUOB iron importer
To Be Published
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6KAD
 | | Cryo-EM structure of the C2S2M2L2-type PSII-LHCII supercomplex from Chlamydomonas reihardtii | | 分子名称: | (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL, (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, ... | | 著者 | Sheng, X, Watanabe, A, Li, A.J, Kim, E, Song, C, Murata, K, Song, D.F, Minagawa, J, Liu, Z.F. | | 登録日 | 2019-06-21 | | 公開日 | 2019-10-23 | | 最終更新日 | 2024-03-27 | | 実験手法 | ELECTRON MICROSCOPY (3.4 Å) | | 主引用文献 | Structural insight into light harvesting for photosystem II in green algae.
Nat.Plants, 5, 2019
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2GH4
 | | YteR/D143N/dGalA-Rha | | 分子名称: | 2,6-anhydro-3-deoxy-L-threo-hex-2-enonic acid-(1-2)-alpha-L-rhamnopyranose, Putative glycosyl hydrolase yteR | | 著者 | Itoh, T, Ochiai, A, Mikami, B, Hashimoto, W, Murata, K. | | 登録日 | 2006-03-25 | | 公開日 | 2006-08-29 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | | 主引用文献 | Structure of unsaturated rhamnogalacturonyl hydrolase complexed with substrate
Biochem.Biophys.Res.Commun., 347, 2006
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2FV0
 | | UGL_D88N/dGlcA-Glc-Rha-Glc | | 分子名称: | 2,6-anhydro-3-deoxy-L-threo-hex-2-enonic acid-(1-4)-beta-D-glucopyranose-(1-4)-alpha-L-rhamnopyranose-(1-3)-beta-D-glucopyranose, Unsaturated glucuronyl hydrolase | | 著者 | Itoh, T, Hashimoto, W, Mikami, B, Murata, K. | | 登録日 | 2006-01-28 | | 公開日 | 2006-05-30 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (1.91 Å) | | 主引用文献 | Substrate recognition by unsaturated glucuronyl hydrolase from Bacillus sp. GL1
Biochem.Biophys.Res.Commun., 344, 2006
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2FV1
 | | UGL_D88N/dGlcA-GlcNAc | | 分子名称: | 2,6-anhydro-3-deoxy-L-threo-hex-2-enonic acid-(1-3)-2-acetamido-2-deoxy-alpha-D-glucopyranose, Unsaturated glucuronyl hydrolase | | 著者 | Itoh, T, Hashimoto, W, Mikami, B, Murata, K. | | 登録日 | 2006-01-28 | | 公開日 | 2006-05-30 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (1.73 Å) | | 主引用文献 | Substrate recognition by unsaturated glucuronyl hydrolase from Bacillus sp. GL1
Biochem.Biophys.Res.Commun., 344, 2006
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6JHX
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4TQV
 | | Crystal structure of a bacterial ABC transporter involved in the import of the acidic polysaccharide alginate | | 分子名称: | AlgM1, AlgM2, AlgS | | 著者 | Maruyama, Y, Itoh, T, Kaneko, A, Nishitani, Y, Mikami, B, Hashimoto, W, Murata, K. | | 登録日 | 2014-06-12 | | 公開日 | 2015-07-22 | | 最終更新日 | 2024-03-20 | | 実験手法 | X-RAY DIFFRACTION (4.504 Å) | | 主引用文献 | Structure of a Bacterial ABC Transporter Involved in the Import of an Acidic Polysaccharide Alginate
Structure, 23, 2015
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6INZ
 | | Crystal structure of solute-binding protein complexed with unsaturated hyaluronan disaccharide | | 分子名称: | 4-deoxy-alpha-L-threo-hex-4-enopyranuronic acid-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Extracellular solute-binding protein family 1, ... | | 著者 | Oiki, S, Mikami, B, Murata, K, Hashimoto, W. | | 登録日 | 2018-10-29 | | 公開日 | 2019-09-11 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (2.289 Å) | | 主引用文献 | Substrate recognition by bacterial solute-binding protein is responsible for import of extracellular hyaluronan and chondroitin sulfate from the animal host.
Biosci.Biotechnol.Biochem., 83, 2019
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1KWH
 | | Structure Analysis AlgQ2, a Macromolecule(alginate)-Binding Periplasmic Protein of Sphingomonas sp. A1. | | 分子名称: | CALCIUM ION, Macromolecule-Binding Periplasmic Protein | | 著者 | Momma, K, Mikami, B, Mishima, Y, Hashimoto, W, Murata, K. | | 登録日 | 2002-01-29 | | 公開日 | 2002-02-13 | | 最終更新日 | 2024-03-13 | | 実験手法 | X-RAY DIFFRACTION (2 Å) | | 主引用文献 | Crystal structure of AlgQ2, a macromolecule (alginate)-binding protein of Sphingomonas sp. A1 at 2.0A resolution.
J.Mol.Biol., 316, 2002
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4TKZ
 | | Crystal structure of phosphotransferase system component EIIA from Streptococcus agalactiae | | 分子名称: | GLYCEROL, Putative uncharacterized protein gbs1890 | | 著者 | Nakamichi, Y, Maruyama, Y, Oiki, S, Mikami, B, Murata, K, Hashimoto, W. | | 登録日 | 2014-05-28 | | 公開日 | 2014-08-20 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | | 主引用文献 | Crystal structure of phosphotransferase system component EIIA from Streptococcus agalactiae
To Be Published
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5H6U
 | | Structure of alginate-binding protein AlgQ2 in complex with an alginate pentasaccharide | | 分子名称: | AlgQ2, CALCIUM ION, beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid | | 著者 | Uenishi, K, Kaneko, A, Maruyama, Y, Mikami, B, Murata, K, Hashimoto, W. | | 登録日 | 2016-11-15 | | 公開日 | 2017-08-09 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (2.006 Å) | | 主引用文献 | A solute-binding protein in the closed conformation induces ATP hydrolysis in a bacterial ATP-binding cassette transporter involved in the import of alginate
J. Biol. Chem., 292, 2017
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5H71
 | | Structure of alginate-binding protein AlgQ2 in complex with an alginate trisaccharide | | 分子名称: | 4-deoxy-alpha-L-erythro-hex-4-enopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid-(1-4)-beta-D-mannopyranuronic acid, AlgQ2, CALCIUM ION, ... | | 著者 | Uenishi, K, Kaneko, A, Maruyama, Y, Mikami, B, Murata, K, Hashimoto, W. | | 登録日 | 2016-11-15 | | 公開日 | 2017-08-09 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (1.549 Å) | | 主引用文献 | A solute-binding protein in the closed conformation induces ATP hydrolysis in a bacterial ATP-binding cassette transporter involved in the import of alginate
J. Biol. Chem., 292, 2017
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5GQP
 | | Thaumatin Structure at pH 8.0, orthorhombic type1 | | 分子名称: | Thaumatin I | | 著者 | Masuda, T, Sano, A, Murata, K, Okubo, K, Suzuki, M, Mikami, B. | | 登録日 | 2016-08-08 | | 公開日 | 2017-08-09 | | 最終更新日 | 2024-10-09 | | 実験手法 | X-RAY DIFFRACTION (1.296 Å) | | 主引用文献 | Thaumatin Structure at pH 8.0, orthorhombic type1
To Be Published
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5GX8
 | | Crystal structure of solute-binding protein related to glycosaminoglycans | | 分子名称: | 1,2-ETHANEDIOL, CALCIUM ION, D(-)-TARTARIC ACID, ... | | 著者 | Oiki, S, Mikami, B, Murata, K, Hashimoto, W. | | 登録日 | 2016-09-15 | | 公開日 | 2017-07-19 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (1.778 Å) | | 主引用文献 | A bacterial ABC transporter enables import of mammalian host glycosaminoglycans
Sci Rep, 7, 2017
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1J0N
 | | Crystal Structure of Bacillus sp. GL1 Xanthan Lyase that Acts on Side Chains of Xanthan | | 分子名称: | 4,6-O-[(1S)-1-carboxyethylidene]-beta-D-glucopyranose, CALCIUM ION, XANTHAN LYASE | | 著者 | Hashimoto, W, Nankai, H, Mikami, B, Murata, K. | | 登録日 | 2002-11-19 | | 公開日 | 2003-04-01 | | 最終更新日 | 2023-12-27 | | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | | 主引用文献 | Crystal Structure of Bacillus sp. GL1 Xanthan Lyase, Which Acts on the Side Chains of Xanthan.
J.Biol.Chem., 278, 2003
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