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PDB: 209 件
7UFT
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BU of 7uft by Molmil
Cryo-EM Structure of Bl_Man38C at 2.9 A
分子名称: Alpha-mannosidase, ZINC ION
著者Santos, C.R, Cordeiro, R.L, Domingues, M.N, Borges, A.C, de Farias, M.A, Van Heel, M, Murakami, M.T, Portugal, R.V.
登録日2022-03-23
公開日2022-11-16
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Cryo-EM Structure of Bl_Man38C at 2.9 A
Nat.Chem.Biol., 2022
7UFR
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BU of 7ufr by Molmil
Cryo-EM Structure of Bl_Man38A at 2.7 A
分子名称: Alpha-mannosidase, ZINC ION
著者Santos, C.R, Cordeiro, R.L, Domingues, M.N, Borges, A.C, de Farias, M.A, Van Heel, M, Murakami, M.T, Portugal, R.V.
登録日2022-03-23
公開日2022-11-16
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献Cryo-EM Structure of Bl_Man38A at 2.7 A
Nat.Chem.Biol., 2022
7UFU
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BU of 7ufu by Molmil
Cryo-EM Structure of Bl_Man38A nucleophile mutant in complex with mannose at 2.7 A
分子名称: Alpha-mannosidase, ZINC ION, alpha-D-mannopyranose
著者Santos, C.R, Cordeiro, R.L, Domingues, M.N, Borges, A.C, de Farias, M.A, Van Heel, M, Murakami, M.T, Portugal, R.V.
登録日2022-03-23
公開日2022-11-16
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (2.7 Å)
主引用文献Cryo-EM Structure of Bl_Man38A nucleophile mutant in complex with mannose at 2.7 A
Nat.Chem.Biol., 2022
7UFS
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BU of 7ufs by Molmil
Cryo-EM Structure of Bl_Man38B at 3.4 A
分子名称: Alpha-mannosidase, ZINC ION
著者Santos, C.R, Cordeiro, R.L, Domingues, M.N, Borges, A.C, de Farias, M.A, Van Heel, M, Murakami, M.T, Portugal, R.V.
登録日2022-03-23
公開日2022-11-16
最終更新日2024-06-12
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Cryo-EM Structure of Bl_Man38B at 3.4 A
Nat.Chem.Biol., 2022
2L8A
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BU of 2l8a by Molmil
Structure of a novel CBM3 lacking the calcium-binding site
分子名称: Endoglucanase
著者Paiva, J.H, Meza, A.N, Sforca, M.L, Navarro, R.Z, Neves, J.L, Santos, C.R, Murakami, M.T, Zeri, A.C.
登録日2011-01-07
公開日2011-12-21
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Dissecting structure-function-stability relationships of a thermostable GH5-CBM3 cellulase from Bacillus subtilis 168.
Biochem.J., 441, 2012
6B7W
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BU of 6b7w by Molmil
Structure of hen egg-white lysozyme pre-treated with high pressure (600 MPa) under isobaric condition
分子名称: ACETATE ION, CHLORIDE ION, GLYCEROL, ...
著者Morais, M.A.B, Nascimento, A.F.Z, Tominaga, C.Y, Cristianini, M, Tribst, A.A.L, Murakami, M.T.
登録日2017-10-05
公開日2018-07-25
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (1.482 Å)
主引用文献How high pressure pre-treatments affect the function and structure of hen egg-white lysozyme
Innov Food Sci Emerg Technol, 47, 2018
2KQ5
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BU of 2kq5 by Molmil
Solution NMR structure of a section of the repeat domain of the type III effector protein PthA
分子名称: Avirulence protein
著者Neves, J.L, Sforca, M.L, Murakami, M.T, Benedetti, C.E, Zeri, A.C.
登録日2009-10-28
公開日2010-09-01
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献An NMR-based structural model of the PthA repeat region reveals a TPR fold that would account for protein-protein and protein-DNA interactions
To be Published
2P3F
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BU of 2p3f by Molmil
Crystal structure of the factor Xa/NAP5 complex
分子名称: Anti-coagulant protein 5, Coagulation factor X, SODIUM ION
著者Rios-Steiner, J.L, Murakami, M.T, Tulinsky, A, Arni, R.K.
登録日2007-03-08
公開日2007-11-06
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Active and exo-site inhibition of human factor Xa: structure of des-Gla factor Xa inhibited by NAP5, a potent nematode anticoagulant protein from Ancylostoma caninum
J.Mol.Biol., 371, 2007
4W7W
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BU of 4w7w by Molmil
High-resolution structure of XacCel5A in complex with cellopentaose
分子名称: Cellulase, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-alpha-D-glucopyranose
著者Paiva, J.H, Murakami, M.T.
登録日2014-08-22
公開日2015-10-21
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.05 Å)
主引用文献High-resolution structure of XacCel5A in complex with cellopentaose
To Be Published
4W89
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BU of 4w89 by Molmil
Crystal structure of XEG5A, a GH5 xyloglucan-specific endo-beta-1,4-glucanase from metagenomic library, in complex with cellotriose
分子名称: MAGNESIUM ION, Xyloglucan-specific endo-beta-1,4-glucanase, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-alpha-D-glucopyranose
著者Santos, C.R, Cordeiro, R.L, Wong, D.W.S, Murakami, M.T.
登録日2014-08-22
公開日2015-03-11
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structural Basis for Xyloglucan Specificity and alpha-d-Xylp(1 6)-d-Glcp Recognition at the -1 Subsite within the GH5 Family.
Biochemistry, 54, 2015
4UZS
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BU of 4uzs by Molmil
Crystal structure of Bifidobacterium bifidum beta-galactosidase
分子名称: BETA-GALACTOSIDASE, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
著者Godoy, A.S, Murakami, M.T, Camilo, C.M, Bernardes, A, Polikarpov, I.
登録日2014-09-08
公開日2015-09-30
最終更新日2024-05-08
実験手法X-RAY DIFFRACTION (1.74 Å)
主引用文献Crystal Structure of Beta1-6-Galactosidase from Bifidobacterium Bifidum S17: Trimeric Architecture, Molecular Determinants of the Enzymatic Activity and its Inhibition by Alpah-Galactose.
FEBS J., 283, 2016
4W88
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BU of 4w88 by Molmil
Crystal structure of XEG5A, a GH5 xyloglucan-specific endo-beta-1,4-glucanase from ruminal metagenomic library, in complex with a xyloglucan oligosaccharide and TRIS
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, MAGNESIUM ION, Xyloglucan-specific endo-beta-1,4-glucanase, ...
著者Santos, C.R, Cordeiro, R.L, Wong, D.W.S, Murakami, M.T.
登録日2014-08-22
公開日2015-03-11
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.58 Å)
主引用文献Structural Basis for Xyloglucan Specificity and alpha-d-Xylp(1 6)-d-Glcp Recognition at the -1 Subsite within the GH5 Family.
Biochemistry, 54, 2015
4W8O
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BU of 4w8o by Molmil
Structure of the luciferase-like enzyme from the nonluminescent Zophobas morio mealworm
分子名称: 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL, CHLORIDE ION, luciferase-like enzymeAMP-CoA-ligase
著者Santos, C.R, Prado, R.A, Viviani, V, Murakami, M.T.
登録日2014-08-25
公開日2015-10-21
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Structure of the luciferase-like enzyme from the nonluminescent Zophobas morio mealworm
To Be Published
4W8B
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BU of 4w8b by Molmil
Crystal structure of XEG5B, a GH5 xyloglucan-specific beta-1,4-glucanase from ruminal metagenomic library, in complex with XXLG
分子名称: Exo-xyloglucanase, GLYCEROL, SULFATE ION, ...
著者Santos, C.R, Cordeiro, R.L, Wong, D.W.S, Murakami, M.T.
登録日2014-08-22
公開日2015-03-11
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.15 Å)
主引用文献Structural Basis for Xyloglucan Specificity and alpha-d-Xylp(1 6)-d-Glcp Recognition at the -1 Subsite within the GH5 Family.
Biochemistry, 54, 2015
4W86
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BU of 4w86 by Molmil
Crystal structure of XEG5A, a GH5 xyloglucan-specific endo-beta-1,4-glucanase from ruminal metagenomic library, in complex with glucose and TRIS
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, MAGNESIUM ION, Xyloglucan-specific endo-beta-1,4-glucanase, ...
著者Santos, C.R, Cordeiro, R.L, Wong, D.W.S, Murakami, M.T.
登録日2014-08-22
公開日2015-03-11
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.64 Å)
主引用文献Structural Basis for Xyloglucan Specificity and alpha-d-Xylp(1 6)-d-Glcp Recognition at the -1 Subsite within the GH5 Family.
Biochemistry, 54, 2015
6MOY
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BU of 6moy by Molmil
Crystal structure of the E257A mutant of BlMan5B in complex with GlcNAc (co-crystallization)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, BlMan5B
著者Lorizolla-Cordeiro, R, Giuseppe, P.O, Murakami, M.T.
登録日2018-10-05
公開日2019-01-30
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献N-glycan Utilization by Bifidobacterium Gut Symbionts Involves a Specialist beta-Mannosidase.
J. Mol. Biol., 431, 2019
6MP7
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BU of 6mp7 by Molmil
Crystal structure of the E257A mutant of BlMan5B in complex with GlcNAc (soaking)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, BlMan5B, CITRATE ANION, ...
著者Lorizolla-Cordeiro, R, Giuseppe, P.O, Murakami, M.T.
登録日2018-10-05
公開日2019-01-30
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献N-glycan Utilization by Bifidobacterium Gut Symbionts Involves a Specialist beta-Mannosidase.
J. Mol. Biol., 431, 2019
6MP2
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BU of 6mp2 by Molmil
Crystal structure of BlMan5B solved by SIRAS
分子名称: BlMan5B, GLYCEROL
著者Lorizolla-Cordeiro, R, Giuseppe, P.O, Murakami, M.T.
登録日2018-10-05
公開日2019-01-30
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.98 Å)
主引用文献N-glycan Utilization by Bifidobacterium Gut Symbionts Involves a Specialist beta-Mannosidase.
J. Mol. Biol., 431, 2019
6N99
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BU of 6n99 by Molmil
Xylose isomerase 2F1 variant from Streptomyces sp. F-1
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, MAGNESIUM ION, SULFATE ION, ...
著者Miyamoto, R.Y, Vieira, P.S, Murakami, M.T, Zanphorlin, L.M.
登録日2018-12-01
公開日2019-12-04
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal structure of a novel xylose isomerase from Streptomyces sp. F-1 revealed the presence of unique features that differ from conventional classes.
Biochim Biophys Acta Gen Subj, 1864, 2020
6MS3
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BU of 6ms3 by Molmil
Crystal structure of the GH43 protein BlXynB mutant (K247S) from Bacillus licheniformis
分子名称: CALCIUM ION, GLYCEROL, Glycoside Hydrolase Family 43, ...
著者Zanphorlin, L.M, Morais, M.A.B, Diogo, J.A, Murakami, M.T.
登録日2018-10-16
公開日2019-04-17
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Structure-guided design combined with evolutionary diversity led to the discovery of the xylose-releasing exo-xylanase activity in the glycoside hydrolase family 43.
Biotechnol. Bioeng., 116, 2019
6MPC
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BU of 6mpc by Molmil
Crystal structure of E257A mutant of BlMan5B
分子名称: BlMan5B
著者Lorizolla-Cordeiro, R, Giuseppe, P.O, Murakami, M.T.
登録日2018-10-05
公開日2019-01-30
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献N-glycan Utilization by Bifidobacterium Gut Symbionts Involves a Specialist beta-Mannosidase.
J. Mol. Biol., 431, 2019
6MPA
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BU of 6mpa by Molmil
Crystal structure of BlMan5B in complex with GlcNAc (soaking)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, BlMan5B, CITRATE ANION
著者Lorizolla-Cordeiro, R, Giuseppe, P.O, Murakami, M.T.
登録日2018-10-05
公開日2019-01-30
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献N-glycan Utilization by Bifidobacterium Gut Symbionts Involves a Specialist beta-Mannosidase.
J. Mol. Biol., 431, 2019
6N98
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BU of 6n98 by Molmil
Xylose isomerase 1F1 variant from Streptomyces sp. F-1
分子名称: MAGNESIUM ION, SULFATE ION, Xylose isomerase
著者Miyamoto, R.Y, Vieira, P.S, Murakami, M.T, Zanphorlin, L.M.
登録日2018-12-01
公開日2019-12-04
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Crystal structure of a novel xylose isomerase from Streptomyces sp. F-1 revealed the presence of unique features that differ from conventional classes.
Biochim Biophys Acta Gen Subj, 1864, 2020
6MS2
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BU of 6ms2 by Molmil
Crystal structure of the GH43 BlXynB protein from Bacillus licheniformis
分子名称: CALCIUM ION, Glycoside Hydrolase Family 43
著者Zanphorlin, L.M, Morais, M.A.B, Diogo, J.A, Murakami, M.T.
登録日2018-10-16
公開日2019-04-17
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.494 Å)
主引用文献Structure-guided design combined with evolutionary diversity led to the discovery of the xylose-releasing exo-xylanase activity in the glycoside hydrolase family 43.
Biotechnol. Bioeng., 116, 2019
6NDQ
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BU of 6ndq by Molmil
Crystal structure of a LPMO from Kitasatospora papulosa
分子名称: lytic polysaccharide monooxygenase
著者Correa, T.L.C, Tomazini Jr, A, Murakami, M.T.
登録日2018-12-14
公開日2019-12-18
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (1.601 Å)
主引用文献Crystal structure of a LPMO from Kitasatospora papulosa
To Be Published

226707

件を2024-10-30に公開中

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