3VP9
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![BU of 3vp9 by Molmil](/molmil-images/mine/3vp9) | Crystal structure of the N-terminal domain of the yeast general corepressor Tup1p mutant | Descriptor: | 1,4-DIETHYLENE DIOXIDE, General transcriptional corepressor TUP1 | Authors: | Matsumura, H, Kusaka, N, Nakamura, T, Tanaka, N, Sagegami, K, Uegaki, K, Inoue, T, Mukai, Y. | Deposit date: | 2012-02-28 | Release date: | 2012-06-13 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (1.799 Å) | Cite: | Crystal structure of the N-terminal domain of the yeast general corepressor Tup1p and its functional implications J.Biol.Chem., 287, 2012
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6KYI
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![BU of 6kyi by Molmil](/molmil-images/mine/6kyi) | Rice Rubisco in complex with sulfate ions | Descriptor: | GLYCEROL, Ribulose bisphosphate carboxylase large chain, Ribulose bisphosphate carboxylase small chain, ... | Authors: | Matsumura, H, Yoshizawa, T, Tanaka, S, Yoshikawa, H. | Deposit date: | 2019-09-19 | Release date: | 2020-09-16 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.75 Å) | Cite: | Hybrid Rubisco with Complete Replacement of Rice Rubisco Small Subunits by Sorghum Counterparts Confers C 4 Plant-like High Catalytic Activity. Mol Plant, 13, 2020
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3VNS
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1MHO
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![BU of 1mho by Molmil](/molmil-images/mine/1mho) | THE 2.0 A STRUCTURE OF HOLO S100B FROM BOVINE BRAIN | Descriptor: | CALCIUM ION, S-100 PROTEIN | Authors: | Matsumura, H, Shiba, T, Inoue, T, Harada, S, Yasushi, K.A.I. | Deposit date: | 1997-09-11 | Release date: | 1998-11-18 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | A novel mode of target recognition suggested by the 2.0 A structure of holo S100B from bovine brain. Structure, 6, 1998
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3VNQ
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3VNR
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2YVK
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![BU of 2yvk by Molmil](/molmil-images/mine/2yvk) | Crystal structure of 5-methylthioribose 1-phosphate isomerase product complex from Bacillus subtilis | Descriptor: | 5-S-METHYL-1-O-PHOSPHONO-5-THIO-D-RIBULOSE, Methylthioribose-1-phosphate isomerase | Authors: | Tamura, H, Inoue, T, Kai, Y, Matsumura, H. | Deposit date: | 2007-04-13 | Release date: | 2008-01-22 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Crystal structure of 5-methylthioribose 1-phosphate isomerase product complex from Bacillus subtilis: Implications for catalytic mechanism Protein Sci., 17, 2008
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1QQI
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![BU of 1qqi by Molmil](/molmil-images/mine/1qqi) | SOLUTION STRUCTURE OF THE DNA-BINDING AND TRANSACTIVATION DOMAIN OF PHOB FROM ESCHERICHIA COLI | Descriptor: | PHOSPHATE REGULON TRANSCRIPTIONAL REGULATORY PROTEIN PHOB | Authors: | Okamura, H, Hanaoka, S, Nagadoi, A, Makino, K, Nishimura, Y, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 1999-06-07 | Release date: | 2000-06-07 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | Structural comparison of the PhoB and OmpR DNA-binding/transactivation domains and the arrangement of PhoB molecules on the phosphate box. J.Mol.Biol., 295, 2000
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3VP8
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![BU of 3vp8 by Molmil](/molmil-images/mine/3vp8) | Crystal structure of the N-terminal domain of the yeast general corepressor Tup1p | Descriptor: | General transcriptional corepressor TUP1 | Authors: | Matsumura, H, Kusaka, N, Nakamura, T, Tanaka, N, Sagegami, K, Uegaki, K, Inoue, T, Mukai, Y. | Deposit date: | 2012-02-28 | Release date: | 2012-06-13 | Last modified: | 2024-03-20 | Method: | X-RAY DIFFRACTION (1.91 Å) | Cite: | Crystal structure of the N-terminal domain of the yeast general corepressor Tup1p and its functional implications J.Biol.Chem., 287, 2012
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1JQN
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1JQO
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8GZW
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![BU of 8gzw by Molmil](/molmil-images/mine/8gzw) | Klebsiella pneumoniae FtsZ complexed with monobody (P21) | Descriptor: | Cell division protein FtsZ, GUANOSINE-5'-DIPHOSPHATE, Monobody | Authors: | Matsumura, H, Yoshizawa, T, Fujita, J, Tanaka, S, Amesaka, H. | Deposit date: | 2022-09-27 | Release date: | 2023-07-19 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Structures of a FtsZ single protofilament and a double-helical tube in complex with a monobody. Nat Commun, 14, 2023
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8GZY
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![BU of 8gzy by Molmil](/molmil-images/mine/8gzy) | Escherichia coli FtsZ complexed with monobody (P21) | Descriptor: | Cell division protein FtsZ, GUANOSINE-5'-DIPHOSPHATE, Monobody | Authors: | Matsumura, H, Yoshizawa, T, Fujita, J, Tanaka, S, Amesaka, H. | Deposit date: | 2022-09-27 | Release date: | 2023-07-19 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | Structures of a FtsZ single protofilament and a double-helical tube in complex with a monobody. Nat Commun, 14, 2023
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8GZV
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![BU of 8gzv by Molmil](/molmil-images/mine/8gzv) | Klebsiella pneumoniae FtsZ complexed with monobody (P212121) | Descriptor: | Cell division protein FtsZ, GUANOSINE-5'-DIPHOSPHATE, Monobody | Authors: | Matsumura, H, Yoshizawa, T, Fujita, J, Tanaka, S, Amesaka, H. | Deposit date: | 2022-09-27 | Release date: | 2023-07-19 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Structures of a FtsZ single protofilament and a double-helical tube in complex with a monobody. Nat Commun, 14, 2023
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8GZX
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![BU of 8gzx by Molmil](/molmil-images/mine/8gzx) | Escherichia coli FtsZ complexed with monobody (P212121) | Descriptor: | Cell division protein FtsZ, GUANOSINE-5'-DIPHOSPHATE, Monobody | Authors: | Matsumura, H, Yoshizawa, T, Fujita, J, Tanaka, S, Amesaka, H. | Deposit date: | 2022-09-27 | Release date: | 2023-07-19 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (1.84 Å) | Cite: | Structures of a FtsZ single protofilament and a double-helical tube in complex with a monobody. Nat Commun, 14, 2023
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1X0K
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![BU of 1x0k by Molmil](/molmil-images/mine/1x0k) | Crystal Structure of Bacteriorhodopsin at pH 10 | Descriptor: | 2,3-DI-O-PHYTANLY-3-SN-GLYCERO-1-PHOSPHORYL-3'-SN-GLYCEROL-1'-PHOSPHATE, 2,3-DI-PHYTANYL-GLYCEROL, Bacteriorhodopsin, ... | Authors: | Okumura, H, Murakami, M, Kouyama, T. | Deposit date: | 2005-03-23 | Release date: | 2005-08-02 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | Crystal Structures of Acid Blue and Alkaline Purple Forms of Bacteriorhodopsin J.Mol.Biol., 351, 2005
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1X0I
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![BU of 1x0i by Molmil](/molmil-images/mine/1x0i) | Crystal Structure of the Acid Blue Form of Bacteriorhodopsin | Descriptor: | 2,3-DI-O-PHYTANLY-3-SN-GLYCERO-1-PHOSPHORYL-3'-SN-GLYCEROL-1'-PHOSPHATE, 2,3-DI-PHYTANYL-GLYCEROL, Bacteriorhodopsin, ... | Authors: | Okumura, H, Murakami, M, Kouyama, T. | Deposit date: | 2005-03-23 | Release date: | 2005-08-02 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Crystal Structures of Acid Blue and Alkaline Purple Forms of Bacteriorhodopsin J.Mol.Biol., 351, 2005
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5B3F
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5GVS
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![BU of 5gvs by Molmil](/molmil-images/mine/5gvs) | Crystal structure of the DDX41 DEAD domain in an apo open form | Descriptor: | Probable ATP-dependent RNA helicase DDX41 | Authors: | Omura, H, Oikawa, D, Nakane, T, Kato, M, Ishii, R, Goto, Y, Suga, H, Ishitani, R, Tokunaga, F, Nureki, O. | Deposit date: | 2016-09-06 | Release date: | 2016-10-19 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Structural and Functional Analysis of DDX41: a bispecific immune receptor for DNA and cyclic dinucleotide Sci Rep, 6, 2016
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4JJF
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![BU of 4jjf by Molmil](/molmil-images/mine/4jjf) | Crystal structure of FE-hydrogenase from methanothermobacter marburgensis in complex with 2-naphthylisocyanide | Descriptor: | 5,10-methenyltetrahydromethanopterin hydrogenase, N-(naphthalen-2-yl)methanimine, iron-guanylyl pyridinol cofactor | Authors: | Tamura, H, Warkentin, E, Ermler, U, Shima, S. | Deposit date: | 2013-03-07 | Release date: | 2013-08-07 | Last modified: | 2023-09-20 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Crystal structures of [fe]-hydrogenase in complex with inhibitory isocyanides: implications for the h2 -activation site. Angew.Chem.Int.Ed.Engl., 52, 2013
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4JJG
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![BU of 4jjg by Molmil](/molmil-images/mine/4jjg) | Crystal structure of FE-hydrogenase from methanothermobacter marburgensis in complex with toluenesulfonylmethylisocyanide | Descriptor: | 5,10-methenyltetrahydromethanopterin hydrogenase, N-methyl-1-[(4-methylbenzyl)sulfonyl]methanamine, iron-guanylyl pyridinol cofactor | Authors: | Tamura, H, Warkentin, E, Ermler, U, Shima, S. | Deposit date: | 2013-03-07 | Release date: | 2013-08-07 | Last modified: | 2023-09-20 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Crystal structures of [fe]-hydrogenase in complex with inhibitory isocyanides: implications for the h2 -activation site. Angew.Chem.Int.Ed.Engl., 52, 2013
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1QB4
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![BU of 1qb4 by Molmil](/molmil-images/mine/1qb4) | CRYSTAL STRUCTURE OF MN(2+)-BOUND PHOSPHOENOLPYRUVATE CARBOXYLASE | Descriptor: | ASPARTIC ACID, MANGANESE (II) ION, PHOSPHOENOLPYRUVATE CARBOXYLASE | Authors: | Matsumura, H, Terada, M, Shirakata, S, Inoue, T, Yoshinaga, T, Izui, K, Kai, Y. | Deposit date: | 1999-04-30 | Release date: | 2002-05-01 | Last modified: | 2024-02-14 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | Plausible phosphoenolpyruvate binding site revealed by 2.6 A structure of Mn2+-bound phosphoenolpyruvate carboxylase from Escherichia coli FEBS Lett., 458, 1999
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6KYJ
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![BU of 6kyj by Molmil](/molmil-images/mine/6kyj) | Hybrid-Rubisco (rice RbcL and sorghum RbcS) in complex with sulfate ions | Descriptor: | GLYCEROL, Ribulose bisphosphate carboxylase large chain, Ribulose bisphosphate carboxylase small chain, ... | Authors: | Matsumura, H, Yoshizawa, T, Tanaka, S, Yoshikawa, H. | Deposit date: | 2019-09-19 | Release date: | 2020-09-16 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | Hybrid Rubisco with Complete Replacement of Rice Rubisco Small Subunits by Sorghum Counterparts Confers C 4 Plant-like High Catalytic Activity. Mol Plant, 13, 2020
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5GVR
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![BU of 5gvr by Molmil](/molmil-images/mine/5gvr) | Crystal structure of the DDX41 DEAD domain in an apo closed form | Descriptor: | (2S)-2-hydroxybutanedioic acid, Probable ATP-dependent RNA helicase DDX41 | Authors: | Omura, H, Oikawa, D, Nakane, T, Kato, M, Ishii, R, Goto, Y, Suga, H, Ishitani, R, Tokunaga, F, Nureki, O. | Deposit date: | 2016-09-06 | Release date: | 2016-10-19 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | Structural and Functional Analysis of DDX41: a bispecific immune receptor for DNA and cyclic dinucleotide Sci Rep, 6, 2016
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6J84
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![BU of 6j84 by Molmil](/molmil-images/mine/6j84) | Crystal structure of TleB with hydroxyl analog | Descriptor: | (2S)-2-hydroxy-N-[(2S)-1-hydroxy-3-(1H-indol-3-yl)propan-2-yl]-3-methylbutanamide, Cytochrome P-450, PROTOPORPHYRIN IX CONTAINING FE | Authors: | Nakamura, H, Mori, T, Abe, I. | Deposit date: | 2019-01-18 | Release date: | 2019-08-07 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Molecular basis for the P450-catalyzed C-N bond formation in indolactam biosynthesis. Nat.Chem.Biol., 15, 2019
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