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PDB: 301 results

5XCR
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BU of 5xcr by Molmil
Crystal structure of P20.1 Fv-clasp fragment with its antigen peptide
Descriptor: C8 peptide, VH-SARAH(Y35C) chimera, VL-SARAH(M24C) chimera
Authors:Arimori, T, Takagi, J.
Deposit date:2017-03-23
Release date:2017-10-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Fv-clasp: An Artificially Designed Small Antibody Fragment with Improved Production Compatibility, Stability, and Crystallizability
Structure, 25, 2017
2GBL
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BU of 2gbl by Molmil
Crystal Structure of Full Length Circadian Clock Protein KaiC with Phosphorylation Sites
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Circadian clock protein kinase kaiC, MAGNESIUM ION
Authors:Pattanayek, R, Williams, D.R, Pattanayek, S, Xu, Y, Mori, T, Johnson, C.H, Stewart, P.L, Egli, M.
Deposit date:2006-03-10
Release date:2007-01-23
Last modified:2021-07-28
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Analysis of KaiA-KaiC protein interactions in the cyano-bacterial circadian clock using hybrid structural methods.
Embo J., 25, 2006
6LHR
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BU of 6lhr by Molmil
Crystal structure of the complex between Vesicle Amine Transport-1 and NADP
Descriptor: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Synaptic vesicle membrane protein VAT-1 homolog
Authors:Hakoshima, T, Kim, S.-Y, Mori, T.
Deposit date:2019-12-09
Release date:2021-01-20
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.62 Å)
Cite:Structural insights into vesicle amine transport-1 (VAT-1) as a member of the NADPH-dependent quinone oxidoreductase family.
Sci Rep, 11, 2021
6KSV
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BU of 6ksv by Molmil
Crystal structure of SurE with D-Leu
Descriptor: Alpha/beta hydrolase, D-LEUCINE, S-(2-acetamidoethyl) (2R)-2-azanyl-4-methyl-pentanethioate, ...
Authors:Zhai, R, Mori, T, Abe, I.
Deposit date:2019-08-26
Release date:2020-06-24
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.42 Å)
Cite:Heterochiral coupling in non-ribosomal peptide macrolactamization
Nat Catal, 2020
6KSU
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BU of 6ksu by Molmil
Crystal structure of SurE
Descriptor: Alpha/beta hydrolase, MALONATE ION, SULFATE ION, ...
Authors:Zhai, R, Mori, T, Abe, I.
Deposit date:2019-08-26
Release date:2020-06-24
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Heterochiral coupling in non-ribosomal peptide macrolactamization
Nat Catal, 2020
6LCD
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BU of 6lcd by Molmil
Crystal structure of AaTPS with PPi
Descriptor: AaTPS, FARNESYL DIPHOSPHATE, MAGNESIUM ION
Authors:He, H, Mori, T, Abe, I.
Deposit date:2019-11-18
Release date:2020-07-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure of AaTPS
Nat Commun, 2020
6A0L
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BU of 6a0l by Molmil
Cyclic alpha-maltosyl-(1-->6)-maltose hydrolase from Arthrobacter globiformis, complex with maltose
Descriptor: Cyclic maltosyl-maltose hydrolase, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Kohno, M, Arakawa, T, Mori, T, Nishimoto, T, Fushinobu, S.
Deposit date:2018-06-05
Release date:2018-09-12
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural features of a bacterial cyclic alpha-maltosyl-(1→6)-maltose (CMM) hydrolase critical for CMM recognition and hydrolysis.
J. Biol. Chem., 293, 2018
5ZXG
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BU of 5zxg by Molmil
Cyclic alpha-maltosyl-(1-->6)-maltose hydrolase from Arthrobacter globiformis, ligand-free form
Descriptor: CALCIUM ION, Cyclic maltosyl-maltose hydrolase
Authors:Kohno, M, Arakawa, T, Mori, T, Nishimoto, T, Fushinobu, S.
Deposit date:2018-05-20
Release date:2018-09-12
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural features of a bacterial cyclic alpha-maltosyl-(1→6)-maltose (CMM) hydrolase critical for CMM recognition and hydrolysis.
J. Biol. Chem., 293, 2018
6A0J
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BU of 6a0j by Molmil
Cyclic alpha-maltosyl-(1-->6)-maltose hydrolase from Arthrobacter globiformis, complex with Cyclic alpha-maltosyl-(1-->6)-maltose
Descriptor: CALCIUM ION, Cyclic alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-6)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, Cyclic maltosyl-maltose hydrolase
Authors:Kohno, M, Arakawa, T, Mori, T, Nishimoto, T, Fushinobu, S.
Deposit date:2018-06-05
Release date:2018-09-12
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Structural features of a bacterial cyclic alpha-maltosyl-(1→6)-maltose (CMM) hydrolase critical for CMM recognition and hydrolysis.
J. Biol. Chem., 293, 2018
6A0K
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BU of 6a0k by Molmil
Cyclic alpha-maltosyl-(1-->6)-maltose hydrolase from Arthrobacter globiformis, complex with panose
Descriptor: CALCIUM ION, Cyclic maltosyl-maltose hydrolase, alpha-D-glucopyranose-(1-6)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, ...
Authors:Kohno, M, Arakawa, T, Mori, T, Nishimoto, T, Fushinobu, S.
Deposit date:2018-06-05
Release date:2018-09-12
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Structural features of a bacterial cyclic alpha-maltosyl-(1→6)-maltose (CMM) hydrolase critical for CMM recognition and hydrolysis.
J. Biol. Chem., 293, 2018
5N82
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BU of 5n82 by Molmil
Crystal structure of an engineered TycA variant in complex with an beta-Phe-AMP analog
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, SULFATE ION, Tyrocidine synthase 1, ...
Authors:Niquille, D.L, Hansen, D.L, Mori, T, Fercher, D, Kries, H, Hilvert, D.
Deposit date:2017-02-22
Release date:2017-12-13
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.708 Å)
Cite:Nonribosomal biosynthesis of backbone-modified peptides.
Nat Chem, 10, 2018
6YPI
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BU of 6ypi by Molmil
Structure of the engineered metallo-Diels-Alderase DA7 W16G,K58Q,L77R,T78R
Descriptor: 3-[BENZYL(DIMETHYL)AMMONIO]PROPANE-1-SULFONATE, BENZOIC ACID, DA7 W16G,K58Q,L77R,T78R, ...
Authors:Basler, S, Mori, T, Hilvert, D.
Deposit date:2020-04-16
Release date:2021-04-28
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.479 Å)
Cite:Efficient Lewis acid catalysis of an abiological reaction in a de novo protein scaffold.
Nat.Chem., 13, 2021
7BVT
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BU of 7bvt by Molmil
Crystal structure of cyclic alpha-maltosyl-1,6-maltose binding protein from Arthrobacter globiformis
Descriptor: Hypothetical sugar ABC-transporter sugar binding protein, alpha-D-glucopyranose-(1-6)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose
Authors:Kohno, M, Arakawa, T, Mori, T, Nishimoto, T, Fushinobu, S.
Deposit date:2020-04-11
Release date:2020-12-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Molecular analysis of cyclic alpha-maltosyl-(1→6)-maltose binding protein in the bacterial metabolic pathway.
Plos One, 15, 2020
8J12
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BU of 8j12 by Molmil
Cryo-EM structure of the AsCas12f-sgRNA-target DNA ternary complex
Descriptor: DNA (38-MER), MAGNESIUM ION, RNA (247-MER), ...
Authors:Hino, T, Omura, N.S, Nakagawa, R, Togashi, T, Takeda, N.S, Hiramoto, T, Tasaka, S, Hirano, H, Tokuyama, T, Uosaki, H, Ishiguro, H, Yamano, H, Ozaki, Y, Motooka, D, Mori, H, Kirita, Y, Kise, Y, Itoh, Y, Matoba, S, Aburatani, H, Yachie, N, Siksnys, V, Ohmori, T, Hoshino, A, Nureki, O.
Deposit date:2023-04-12
Release date:2023-09-27
Method:ELECTRON MICROSCOPY (3.08 Å)
Cite:Minimal and most efficient genome editing Cas enzyme
To Be Published
8J1J
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BU of 8j1j by Molmil
Cryo-EM structure of the AsCas12f-YHAM-sgRNAS3-5v7-target DNA
Descriptor: DNA (38-MER), MAGNESIUM ION, RNA (118-MER), ...
Authors:Hino, T, Omura, N.S, Nakagawa, R, Togashi, T, Takeda, N.S, Hiramoto, T, Tasaka, S, Hirano, H, Tokuyama, T, Uosaki, H, Ishiguro, H, Yamano, H, Ozaki, Y, Motooka, D, Mori, H, Kirita, Y, Kise, Y, Itoh, Y, Matoba, S, Aburatani, H, Yachie, N, Siksnys, V, Ohmori, T, Hoshino, A, Nureki, O.
Deposit date:2023-04-13
Release date:2023-09-27
Method:ELECTRON MICROSCOPY (2.91 Å)
Cite:Minimal and most efficient genome editing Cas enzyme
To Be Published
8J3R
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BU of 8j3r by Molmil
Cryo-EM structure of the AsCas12f-HKRA-sgRNAS3-5v7-target DNA
Descriptor: DNA (37-MER), DNA (38-MER), MAGNESIUM ION, ...
Authors:Hino, T, Omura, N.S, Nakagawa, R, Togashi, T, Takeda, N.S, Hiramoto, T, Tasaka, S, Hirano, H, Tokuyama, T, Uosaki, H, Ishiguro, H, Yamano, H, Ozaki, Y, Motooka, D, Mori, H, Kirita, Y, Kise, Y, Itoh, Y, Matoba, S, Aburatani, H, Yachie, N, Siksnys, V, Ohmori, T, Hoshino, A, Nureki, O.
Deposit date:2023-04-18
Release date:2023-09-27
Method:ELECTRON MICROSCOPY (2.95 Å)
Cite:Minimal and most efficient genome editing Cas enzyme
To Be Published
6F17
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BU of 6f17 by Molmil
Structure of Mb NMH H64V, V68A mutant resting state
Descriptor: Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Tinzl, M, Hayashi, T, Mori, T, Hilvert, D.
Deposit date:2017-11-21
Release date:2018-08-22
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Capture and characterization of a reactive haem-carbenoid complex in an artificial metalloenzyme
Nat Catal, 1, 2018
6F19
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BU of 6f19 by Molmil
Structure of Mb NMH H64V, V68A mutant complex with EDA incubated at room temperature for 5 min
Descriptor: ETHYL ACETATE, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Tinzl, M, Hayashi, T, Mori, T, Hilvert, D.
Deposit date:2017-11-21
Release date:2018-08-22
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.895 Å)
Cite:Capture and characterization of a reactive haem-carbenoid complex in an artificial metalloenzyme
Nat Catal, 1, 2018
6F1A
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BU of 6f1a by Molmil
Structure of Mb NMH H64V, V68A mutant complex with EDA incubated at room temperature for 20 min
Descriptor: ETHYL ACETATE, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Tinzl, M, Hayashi, T, Mori, T, Hilvert, D.
Deposit date:2017-11-21
Release date:2018-08-22
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.399 Å)
Cite:Capture and characterization of a reactive haem-carbenoid complex in an artificial metalloenzyme
Nat Catal, 1, 2018
6F18
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BU of 6f18 by Molmil
Structure of Mb NMH H64V, V68A mutant complex with EDA
Descriptor: ETHYL ACETATE, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Tinzl, M, Hayashi, T, Mori, T, Hilvert, D.
Deposit date:2017-11-21
Release date:2018-08-22
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Capture and characterization of a reactive haem-carbenoid complex in an artificial metalloenzyme
Nat Catal, 1, 2018
6G5A
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BU of 6g5a by Molmil
Heme-carbene complex in myoglobin H64V/V68A containing an N-methylhistidine as the proximal ligand, 1.48 angstrom resolution
Descriptor: ETHYL ACETATE, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Tinzl, M, Hayashi, T, Mori, T, Hilvert, D.
Deposit date:2018-03-29
Release date:2018-08-22
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.483 Å)
Cite:Capture and characterization of a reactive haem-carbenoid complex in an artificial metalloenzyme
Nat Catal, 1, 2018
6G5B
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BU of 6g5b by Molmil
Heme-carbene complex in myoglobin H64V/V68A containing an N-methylhistidine as the proximal ligand, 1.6 angstrom resolution
Descriptor: ETHYL ACETATE, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Tinzl, M, Hayashi, T, Mori, T, Hilvert, D.
Deposit date:2018-03-29
Release date:2018-08-22
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Capture and characterization of a reactive haem-carbenoid complex in an artificial metalloenzyme
Nat Catal, 1, 2018
6G5T
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BU of 6g5t by Molmil
Myoglobin H64V/V68A in the resting state, 1.5 Angstrom resolution
Descriptor: 1,2-ETHANEDIOL, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Tinzl, M, Hayashi, T, Mori, T, Hilvert, D.
Deposit date:2018-03-30
Release date:2018-08-22
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Capture and characterization of a reactive haem-carbenoid complex in an artificial metalloenzyme
Nat Catal, 1, 2018
3S1A
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BU of 3s1a by Molmil
Crystal structure of the phosphorylation-site double mutant S431E/T432E of the KaiC circadian clock protein
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, Circadian clock protein kinase kaiC, MAGNESIUM ION
Authors:Pattanayek, R, Williams, D.W, Rossi, G, Weigand, S, Mori, T, Johnson, C.H, Stewart, P.L, Egli, M.
Deposit date:2011-05-14
Release date:2011-09-21
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:Combined SAXS/EM Based Models of the S. elongatus Post-Translational Circadian Oscillator and its Interactions with the Output His-Kinase SasA.
Plos One, 6, 2011
5OJC
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BU of 5ojc by Molmil
Structure of MbQ2.1 NMH
Descriptor: IMIDAZOLE, Myoglobin, PROTOPORPHYRIN IX CONTAINING FE
Authors:Hayashi, T, Pott, M, Mori, T, Mittl, P, Green, A, Hivert, D.
Deposit date:2017-07-21
Release date:2018-01-24
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:A Noncanonical Proximal Heme Ligand Affords an Efficient Peroxidase in a Globin Fold.
J. Am. Chem. Soc., 140, 2018

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