3ADA
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![BU of 3ada by Molmil](/molmil-images/mine/3ada) | Heterotetrameric Sarcosine Oxidase from Corynebacterium sp. U-96 in complex with sulfite | Descriptor: | FLAVIN MONONUCLEOTIDE, FLAVIN-ADENINE DINUCLEOTIDE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ... | Authors: | Suzuki, H, Moriguchi, T, Ida, K. | Deposit date: | 2010-01-15 | Release date: | 2010-08-25 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Channeling and conformational changes in the heterotetrameric sarcosine oxidase from Corynebacterium sp. U-96. J.Biochem., 148, 2010
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1WQ8
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![BU of 1wq8 by Molmil](/molmil-images/mine/1wq8) | Crystal structure of Vammin, a VEGF-F from a snake venom | Descriptor: | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Vascular endothelial growth factor toxin | Authors: | Suto, K, Yamazaki, Y, Morita, T, Mizuno, H. | Deposit date: | 2004-09-23 | Release date: | 2004-12-07 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Crystal structures of novel vascular endothelial growth factors (VEGF) from snake venoms: insight into selective VEGF binding to kinase insert domain-containing receptor but not to fms-like tyrosine kinase-1. J.Biol.Chem., 280, 2005
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1WQ9
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![BU of 1wq9 by Molmil](/molmil-images/mine/1wq9) | Crystal structure of VR-1, a VEGF-F from a snake venom | Descriptor: | Vascular endothelial growth factor | Authors: | Suto, K, Yamazaki, Y, Morita, T, Mizuno, H. | Deposit date: | 2004-09-24 | Release date: | 2004-12-07 | Last modified: | 2019-12-25 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Crystal structures of novel vascular endothelial growth factors (VEGF) from snake venoms: insight into selective VEGF binding to kinase insert domain-containing receptor but not to fms-like tyrosine kinase-1. J.Biol.Chem., 280, 2005
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1UKM
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![BU of 1ukm by Molmil](/molmil-images/mine/1ukm) | Crystal structure of EMS16, an Antagonist of collagen receptor integrin alpha2beta1 (GPIa/IIa) | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, EMS16 A chain, ... | Authors: | Horii, K, Okuda, D, Morita, T, Mizuno, H. | Deposit date: | 2003-08-27 | Release date: | 2003-11-04 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Structural characterization of EMS16, an Antagonist of collagen receptor (GPIa/IIa) from the venom of Echis multisquamatus Biochemistry, 42, 2003
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1J35
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![BU of 1j35 by Molmil](/molmil-images/mine/1j35) | Crystal Structure of Ca(II)-bound Gla Domain of Factor IX Complexed with Binding Protein | Descriptor: | CALCIUM ION, Coagulation factor IX, Coagulation factor IX-binding protein B chain, ... | Authors: | Shikamoto, Y, Morita, T, Fujimoto, Z, Mizuno, H. | Deposit date: | 2003-01-20 | Release date: | 2003-07-08 | Last modified: | 2023-11-15 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Crystal Structure of Mg2+- and Ca2+-bound Gla Domain of Factor IX Complexed with Binding Protein J.Biol.Chem., 278, 2003
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5B4W
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![BU of 5b4w by Molmil](/molmil-images/mine/5b4w) | Crystal structure of Plexin inhibitor complex | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, Plexin-B1, Synthesized cyclic peptide | Authors: | Matsunaga, Y, Kitago, Y, Arimori, T, Takagi, J. | Deposit date: | 2016-04-19 | Release date: | 2016-12-28 | Last modified: | 2023-11-15 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | Allosteric Inhibition of a Semaphorin 4D Receptor Plexin B1 by a High-Affinity Macrocyclic Peptide Cell Chem Biol, 23, 2016
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1J34
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![BU of 1j34 by Molmil](/molmil-images/mine/1j34) | Crystal Structure of Mg(II)-and Ca(II)-bound Gla Domain of Factor IX Complexed with Binding Protein | Descriptor: | CALCIUM ION, Coagulation factor IX, MAGNESIUM ION, ... | Authors: | Shikamoto, Y, Morita, T, Fujimoto, Z, Mizuno, H. | Deposit date: | 2003-01-20 | Release date: | 2003-07-08 | Last modified: | 2023-11-15 | Method: | X-RAY DIFFRACTION (1.55 Å) | Cite: | Crystal Structure of Mg2+- and Ca2+-bound Gla Domain of Factor IX Complexed with Binding Protein J.Biol.Chem., 278, 2003
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1V7P
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![BU of 1v7p by Molmil](/molmil-images/mine/1v7p) | Structure of EMS16-alpha2-I domain complex | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, EMS16 A chain, ... | Authors: | Horii, K, Okuda, D, Morita, T, Mizuno, H. | Deposit date: | 2003-12-19 | Release date: | 2004-09-07 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Crystal structure of EMS16 in complex with the integrin alpha2-I domain J.Mol.Biol., 341, 2004
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2DDB
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![BU of 2ddb by Molmil](/molmil-images/mine/2ddb) | Crystal structure of pseudecin from Pseudechis porphyriacus | Descriptor: | FORMIC ACID, GLYCEROL, Pseudecin, ... | Authors: | Suzuki, N, Yamazaki, Y, Fujimoto, Z, Morita, T, Mizuno, H. | Deposit date: | 2006-01-25 | Release date: | 2007-01-30 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Structures of pseudechetoxin and pseudecin, two snake-venom cysteine-rich secretory proteins that target cyclic nucleotide-gated ion channels: implications for movement of the C-terminal cysteine-rich domain Acta Crystallogr.,Sect.D, 64, 2008
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5Y7F
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![BU of 5y7f by Molmil](/molmil-images/mine/5y7f) | Crystal structure of catalytic domain of UGGT (UDP-bound form) from Thermomyces dupontii | Descriptor: | 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, UGGT, ... | Authors: | Satoh, T, Song, C, Zhu, T, Toshimori, T, Murata, K, Hayashi, Y, Kamikubo, H, Uchihashi, T, Kato, K. | Deposit date: | 2017-08-17 | Release date: | 2017-09-27 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.35 Å) | Cite: | Visualisation of a flexible modular structure of the ER folding-sensor enzyme UGGT. Sci Rep, 7, 2017
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5Y7O
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![BU of 5y7o by Molmil](/molmil-images/mine/5y7o) | Crystal structure of folding sensor region of UGGT from Thermomyces dupontii | Descriptor: | UGGT | Authors: | Satoh, T, Song, C, Zhu, T, Toshimori, T, Murata, K, Hayashi, Y, Kamikubo, H, Uchihashi, T, Kato, K. | Deposit date: | 2017-08-17 | Release date: | 2017-09-27 | Last modified: | 2017-11-01 | Method: | X-RAY DIFFRACTION (3.1 Å) | Cite: | Visualisation of a flexible modular structure of the ER folding-sensor enzyme UGGT. Sci Rep, 7, 2017
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3A08
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![BU of 3a08 by Molmil](/molmil-images/mine/3a08) | Structure of (PPG)4-OOG-(PPG)4, monoclinic, twinned crystal | Descriptor: | collagen-like peptide | Authors: | Okuyama, K, Morimoto, T, Wu, G, Noguchi, K, Mizuno, K, Bachinger, H.P. | Deposit date: | 2009-03-06 | Release date: | 2010-01-12 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.22 Å) | Cite: | Two crystal modifications of (Pro-Pro-Gly)4-Hyp-Hyp-Gly-(Pro-Pro-Gly)4 reveal the puckering preference of Hyp(X) in the Hyp(X):Hyp(Y) and Hyp(X):Pro(Y) stacking pairs in collagen helices. Acta Crystallogr.,Sect.D, 66, 2010
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3A19
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![BU of 3a19 by Molmil](/molmil-images/mine/3a19) | Structure of (PPG)4-OOG-(PPG)4_H monoclinic, twinned crystal | Descriptor: | collagen-like peptide | Authors: | Okuyama, K, Morimoto, T, Hyakutake, M, Wu, G, Mizuno, K, Bachinger, H.P. | Deposit date: | 2009-03-28 | Release date: | 2010-01-12 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.55 Å) | Cite: | Two crystal modifications of (Pro-Pro-Gly)4-Hyp-Hyp-Gly-(Pro-Pro-Gly)4 reveal the puckering preference of Hyp(X) in the Hyp(X):Hyp(Y) and Hyp(X):Pro(Y) stacking pairs in collagen helices. Acta Crystallogr.,Sect.D, 66, 2010
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1X2W
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![BU of 1x2w by Molmil](/molmil-images/mine/1x2w) | Crystal Structure of Apo-Habu IX-bp at pH 4.6 | Descriptor: | CHLORIDE ION, Coagulation factor IX/X-binding protein A chain, Coagulation factor IX/factor X-binding protein B chain, ... | Authors: | Suzuki, N, Fujimoto, Z, Morita, T, Fukamizu, A, Mizuno, H. | Deposit date: | 2005-04-26 | Release date: | 2005-10-04 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.29 Å) | Cite: | pH-Dependent Structural Changes at Ca(2+)-binding sites of Coagulation Factor IX-binding Protein J.Mol.Biol., 353, 2005
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1X2T
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![BU of 1x2t by Molmil](/molmil-images/mine/1x2t) | Crystal Structure of Habu IX-bp at pH 6.5 | Descriptor: | CALCIUM ION, Coagulation factor IX/X-binding protein A chain, Coagulation factor IX/factor X-binding protein B chain, ... | Authors: | Suzuki, N, Fujimoto, Z, Morita, T, Fukamizu, A, Mizuno, H. | Deposit date: | 2005-04-26 | Release date: | 2005-10-04 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.72 Å) | Cite: | pH-Dependent Structural Changes at Ca(2+)-binding sites of Coagulation Factor IX-binding Protein J.Mol.Biol., 353, 2005
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1C3A
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![BU of 1c3a by Molmil](/molmil-images/mine/1c3a) | CRYSTAL STRUCTURE OF FLAVOCETIN-A FROM THE HABU SNAKE VENOM, A NOVEL CYCLIC TETRAMER OF C-TYPE LECTIN-LIKE HETERODIMERS | Descriptor: | FLAVOCETIN-A: ALPHA SUBUNIT, FLAVOCETIN-A: BETA SUBUNIT | Authors: | Fukuda, K, Mizuno, H, Atoda, H, Morita, T. | Deposit date: | 1999-07-27 | Release date: | 2000-03-06 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Crystal structure of flavocetin-A, a platelet glycoprotein Ib-binding protein, reveals a novel cyclic tetramer of C-type lectin-like heterodimers. Biochemistry, 39, 2000
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1IOD
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![BU of 1iod by Molmil](/molmil-images/mine/1iod) | CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN THE COAGULATION FACTOR X BINDING PROTEIN FROM SNAKE VENOM AND THE GLA DOMAIN OF FACTOR X | Descriptor: | CALCIUM ION, COAGULATION FACTOR X BINDING PROTEIN, COAGULATION FACTOR X GLA DOMAIN | Authors: | Mizuno, H, Fujimoto, Z, Atoda, H, Morita, T. | Deposit date: | 2001-02-27 | Release date: | 2001-06-27 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Crystal structure of an anticoagulant protein in complex with the Gla domain of factor X. Proc.Natl.Acad.Sci.Usa, 98, 2001
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2EPF
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![BU of 2epf by Molmil](/molmil-images/mine/2epf) | Crystal Structure of Zinc-Bound Pseudecin From Pseudechis Porphyriacus | Descriptor: | Pseudecin, SODIUM ION, ZINC ION | Authors: | Suzuki, N, Yamazaki, Y, Fujimoto, Z, Morita, T, Mizuno, H. | Deposit date: | 2007-03-29 | Release date: | 2008-03-11 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Structures of pseudechetoxin and pseudecin, two snake-venom cysteine-rich secretory proteins that target cyclic nucleotide-gated ion channels: implications for movement of the C-terminal cysteine-rich domain Acta Crystallogr.,Sect.D, 64, 2008
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2EXD
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![BU of 2exd by Molmil](/molmil-images/mine/2exd) | The solution structure of the C-terminal domain of a nfeD homolog from Pyrococcus horikoshii | Descriptor: | nfeD short homolog | Authors: | Kuwahara, Y, Ohno, A, Morii, T, Tochio, H, Shirakawa, M, Hiroaki, H. | Deposit date: | 2005-11-08 | Release date: | 2006-12-12 | Last modified: | 2024-05-01 | Method: | SOLUTION NMR | Cite: | The solution structure of the C-terminal domain of NfeD reveals a novel membrane-anchored OB-fold. Protein Sci., 17, 2008
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2DDA
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![BU of 2dda by Molmil](/molmil-images/mine/2dda) | Crystal structure of pseudechetoxin from Pseudechis australis | Descriptor: | FORMIC ACID, GLYCEROL, Pseudechetoxin, ... | Authors: | Suzuki, N, Yamazaki, Y, Fujimoto, Z, Morita, T, Mizuno, H. | Deposit date: | 2006-01-25 | Release date: | 2007-01-30 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (2.25 Å) | Cite: | Structures of pseudechetoxin and pseudecin, two snake-venom cysteine-rich secretory proteins that target cyclic nucleotide-gated ion channels: implications for movement of the C-terminal cysteine-rich domain Acta Crystallogr.,Sect.D, 64, 2008
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5XAU
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![BU of 5xau by Molmil](/molmil-images/mine/5xau) | Crystal structure of integrin binding fragment of laminin-511 | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ... | Authors: | Takizawa, M, Arimori, T, Kitago, Y, Takagi, J, Sekiguchi, K. | Deposit date: | 2017-03-15 | Release date: | 2017-09-20 | Last modified: | 2020-07-29 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Mechanistic basis for the recognition of laminin-511 by alpha 6 beta 1 integrin. Sci Adv, 3, 2017
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2ZAO
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![BU of 2zao by Molmil](/molmil-images/mine/2zao) | Crystal structure of mouse SKD1/VPS4B ADP-form | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, Vacuolar protein sorting-associating protein 4B | Authors: | Inoue, M, Kawasaki, M, Kamikubo, H, Kataoka, M, Kato, R, Yoshimori, T, Wakatsuki, S. | Deposit date: | 2007-10-08 | Release date: | 2008-10-07 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (3.2 Å) | Cite: | Nucleotide-dependent conformational changes and assembly of the AAA ATPase SKD1/VPS4B Traffic, 9, 2008
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3A0A
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![BU of 3a0a by Molmil](/molmil-images/mine/3a0a) | Structure of (PPG)4-OPG-(PPG)4, monoclinic, twinned crystal | Descriptor: | collagen-like peptide | Authors: | Okuyama, K, Morimoto, T, Hongo, C, Katagiri, A, Tanaka, Y, Nishino, N. | Deposit date: | 2009-03-13 | Release date: | 2010-03-09 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.36 Å) | Cite: | Crystal structure of (PPG)4-OPG-(PPG)4 To be Published
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3A0M
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![BU of 3a0m by Molmil](/molmil-images/mine/3a0m) | Structure of (PPG)4-OVG-(PPG)4, monoclinic, twinned crystal | Descriptor: | collagen-like peptide | Authors: | Okuyama, K, Morimoto, T, Mizuno, K, Bachinger, H.P. | Deposit date: | 2009-03-21 | Release date: | 2010-03-02 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.02 Å) | Cite: | Stabilization of triple-helical structures of collagen peptides containing a Hyp-Thr-Gly, Hyp-Val-Gly, or Hyp-Ser-Gly sequence. Biopolymers, 95, 2011
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2ZAN
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![BU of 2zan by Molmil](/molmil-images/mine/2zan) | Crystal structure of mouse SKD1/VPS4B ATP-form | Descriptor: | ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Vacuolar protein sorting-associating protein 4B | Authors: | Inoue, M, Kawasaki, M, Kamikubo, H, Kataoka, M, Kato, R, Yoshimori, T, Wakatsuki, S. | Deposit date: | 2007-10-08 | Release date: | 2008-10-07 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (3 Å) | Cite: | Nucleotide-dependent conformational changes and assembly of the AAA ATPase SKD1/VPS4B Traffic, 9, 2008
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