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PDB: 91 件
8W9J
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Crystal structure of human CLEC12A ectodomain complexed with 50C1 Fab
分子名称: Anti-human CLEC12A antibody 50C1 heavy chain, Anti-human CLEC12A antibody 50C1 light chain, C-type lectin domain family 12 member A
著者Mori, S, Nagae, M, Yamasaki, S.
登録日2023-09-05
公開日2024-03-06
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献Crystal structure of the complex of CLEC12A and an antibody that interferes with binding of diverse ligands.
Int.Immunol., 36, 2024
8W9H
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Crystal structure of anti-human CLEC12A antibody 50C1
分子名称: 1,2-ETHANEDIOL, SULFATE ION, anti-human CLEC12A antibody 50C1 Fab Heavy chain, ...
著者Mori, S, Nagae, M, Yamasaki, S.
登録日2023-09-05
公開日2024-03-06
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of the complex of CLEC12A and an antibody that interferes with binding of diverse ligands.
Int.Immunol., 36, 2024
8W8T
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Crystal structure of human CLEC12A CRD
分子名称: C-type lectin domain family 12 member A, SULFATE ION
著者Mori, S, Nagae, M, Yamasaki, S.
登録日2023-09-04
公開日2024-03-06
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of the complex of CLEC12A and an antibody that interferes with binding of diverse ligands.
Int.Immunol., 36, 2024
1Y3I
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Crystal Structure of Mycobacterium tuberculosis NAD kinase-NAD complex
分子名称: GLYCEROL, Inorganic polyphosphate/ATP-NAD kinase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
著者Mori, S, Yamasaki, M, Maruyama, Y, Momma, K, Kawai, S, Hashimoto, W, Mikami, B, Murata, K.
登録日2004-11-25
公開日2005-01-18
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献NAD-binding mode and the significance of intersubunit contact revealed by the crystal structure of Mycobacterium tuberculosis NAD kinase-NAD complex
Biochem.Biophys.Res.Commun., 327, 2005
1Y3H
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Crystal Structure of Inorganic Polyphosphate/ATP-NAD kinase from Mycobacterium tuberculosis
分子名称: Inorganic polyphosphate/ATP-NAD kinase
著者Mori, S, Yamasaki, M, Maruyama, Y, Momma, K, kawai, S, Hashimoto, W, Mikami, B, Murata, K.
登録日2004-11-24
公開日2005-01-18
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献NAD-binding mode and the significance of intersubunit contact revealed by the crystal structure of Mycobacterium tuberculosis NAD kinase-NAD complex
BIOCHEM.BIOPHYS.RES.COMMUN., 327, 2005
2KJY
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MYPT1(658-714)
分子名称: Protein phosphatase 1 regulatory subunit 12A
著者Mori, S, Iwaoka, R, Eto, M, Ohki, S.
登録日2009-06-11
公開日2009-09-08
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of the inhibitory phosphorylation domain of myosin phosphatase targeting subunit 1
Proteins, 77, 2009
6AF2
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Crystal structure of N-terminus deletion mutant of Mycobacterium avium diadenosine 5',5'''-P1,P4-tetraphosphate phosphorylase
分子名称: DI(HYDROXYETHYL)ETHER, HIT domain-containing protein, PENTAETHYLENE GLYCOL, ...
著者Mori, S, Honda, N, Kim, H, Rimbara, E, Shibayama, K.
登録日2018-08-08
公開日2019-08-14
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.001 Å)
主引用文献Crystal structure of N-terminus deletion mutant of Mycobacterium avium diadenosine tetraphosphate phosphorylase
To Be Published
3ANO
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Crystal Structure of a Novel Diadenosine 5',5'''-P1,P4-Tetraphosphate Phosphorylase from Mycobacterium tuberculosis H37Rv
分子名称: AP-4-A phosphorylase, PHOSPHATE ION, TETRAETHYLENE GLYCOL
著者Mori, S, Shibayama, K, Wachino, J, Arakawa, Y.
登録日2010-09-06
公開日2011-05-18
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.894 Å)
主引用文献Structural insights into the novel diadenosine 5',5-P1,P4-tetraphosphate phosphorylase from Mycobacterium tuberculosis H37Rv
J.Mol.Biol., 410, 2011
3W9Y
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Crystal structure of the human DLG1 guanylate kinase domain
分子名称: Disks large homolog 1
著者Mori, S, Tezuka, Y, Arakawa, A, Handa, N, Shirouzu, M, Akiyama, T, Yokoyama, S.
登録日2013-04-18
公開日2013-06-26
最終更新日2023-12-06
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of the guanylate kinase domain from discs large homolog 1 (DLG1/SAP97)
Biochem.Biophys.Res.Commun., 435, 2013
3WO5
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Crystal structure of S147Q of Rv2613c from Mycobacterium tuberculosis
分子名称: AP-4-A phosphorylase, GLYCEROL, PHOSPHATE ION, ...
著者Mori, S, Wachino, J, Arakawa, Y, Shibayama, K.
登録日2013-12-20
公開日2014-12-24
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.79 Å)
主引用文献Role of Ser-147 and Ala-149 in catalytic activity of diadenosine tetraphosphate phosphorylase from Mycobacterium tuberculosis H37Rv
To be Published
7YH7
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SARS-CoV-2 spike in complex with neutralizing antibody NIV-8 (state 2)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, NIV-8 Fab heavy chain, ...
著者Moriyama, S, Anraku, Y, Muranishi, S, Adachi, Y, Kuroda, D, Higuchi, Y, Kotaki, R, Tonouchi, K, Yumoto, K, Suzuki, T, Kita, S, Someya, T, Fukuhara, H, Kuroda, Y, Yamamoto, T, Onodera, T, Fukushi, S, Maeda, K, Nakamura-Uchiyama, F, Hashiguchi, T, Hoshino, A, Maenaka, K, Takahashi, Y.
登録日2022-07-13
公開日2023-07-19
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Structural delineation and computational design of SARS-CoV-2-neutralizing antibodies against Omicron subvariants.
Nat Commun, 14, 2023
7YH6
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Structure of SARS-CoV-2 spike RBD in complex with neutralizing antibody NIV-8
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, NIV-8 Fab heavy chain, NIV-8 Fab light chain, ...
著者Moriyama, S, Anraku, Y, Muranishi, S, Adachi, Y, Kuroda, D, Higuchi, Y, Kotaki, R, Tonouchi, K, Yumoto, K, Suzuki, T, Kita, S, Someya, T, Fukuhara, H, Kuroda, Y, Yamamoto, T, Onodera, T, Fukushi, S, Maeda, K, Nakamura-Uchiyama, F, Hashiguchi, T, Hoshino, A, Maenaka, K, Takahashi, Y.
登録日2022-07-12
公開日2023-07-19
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Structural delineation and computational design of SARS-CoV-2-neutralizing antibodies against Omicron subvariants.
Nat Commun, 14, 2023
8HGM
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Structure of SARS-CoV-2 spike RBD in complex with neutralizing antibody NIV-11
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, NIV-11 Fab heavy chain, NIV-11 Fab light chain, ...
著者Moriyama, S, Anraku, Y, Muranishi, S, Adachi, Y, Kuroda, D, Higuchi, Y, Kotaki, R, Tonouchi, K, Yumoto, K, Suzuki, T, Kita, S, Someya, T, Fukuhara, H, Kuroda, Y, Yamamoto, T, Onodera, T, Fukushi, S, Maeda, K, Nakamura-Uchiyama, F, Hashiguchi, T, Hoshino, A, Maenaka, K, Takahashi, Y.
登録日2022-11-15
公開日2023-10-25
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Structural delineation and computational design of SARS-CoV-2-neutralizing antibodies against Omicron subvariants.
Nat Commun, 14, 2023
8HGL
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BU of 8hgl by Molmil
SARS-CoV-2 spike in complex with neutralizing antibody NIV-11
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, NIV-11 Fab heavy chain, ...
著者Moriyama, S, Anraku, Y, Muranishi, S, Adachi, Y, Kuroda, D, Higuchi, Y, Kotaki, R, Tonouchi, K, Yumoto, K, Suzuki, T, Kita, S, Someya, T, Fukuhara, H, Kuroda, Y, Yamamoto, T, Onodera, T, Fukushi, S, Maeda, K, Nakamura-Uchiyama, F, Hashiguchi, T, Hoshino, A, Maenaka, K, Takahashi, Y.
登録日2022-11-15
公開日2023-10-25
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Structural delineation and computational design of SARS-CoV-2-neutralizing antibodies against Omicron subvariants.
Nat Commun, 14, 2023
8HES
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BU of 8hes by Molmil
Crystal structure of SARS-CoV-2 RBD and NIV-10 complex
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, NIV-10 Fab H-chain, NIV-10 Fab L-chain, ...
著者Moriyama, S, Anraku, Y, Taminishi, S, Adachi, Y, Kuroda, D, Higuchi, Y, Kotaki, R, Tonouchi, K, Yumoto, K, Suzuki, T, Kita, S, Someya, T, Fukuhara, H, Kuroda, Y, Yamamoto, T, Onodera, T, Fukushi, S, Maeda, K, Nakamura-Uchiyama, F, Hashiguchi, T, Hoshino, A, Maenaka, K, Takahashi, Y.
登録日2022-11-08
公開日2023-11-08
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural delineation and computational design of SARS-CoV-2-neutralizing antibodies against Omicron subvariants.
Nat Commun, 14, 2023
5ZI2
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MDH3 wild type, nad-form
分子名称: ADENOSINE-5'-DIPHOSPHATE, CHLORIDE ION, GLYCEROL, ...
著者Moriyama, S, Nishio, K, Mizushima, T.
登録日2018-03-14
公開日2018-10-24
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structure of glyoxysomal malate dehydrogenase (MDH3) from Saccharomyces cerevisiae.
Acta Crystallogr F Struct Biol Commun, 74, 2018
5ZI3
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MDH3 wild type, apo-form
分子名称: GLYCEROL, Malate dehydrogenase
著者Moriyama, S, Nishio, K, Mizushima, T.
登録日2018-03-14
公開日2018-10-24
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structure of glyoxysomal malate dehydrogenase (MDH3) from Saccharomyces cerevisiae.
Acta Crystallogr F Struct Biol Commun, 74, 2018
5ZI4
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MDH3 wild type, nad-oaa-form
分子名称: Malate dehydrogenase, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, OXALOACETATE ION
著者Moriyama, S, Nishio, K, Mizushima, T.
登録日2018-03-14
公開日2018-10-24
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structure of glyoxysomal malate dehydrogenase (MDH3) from Saccharomyces cerevisiae.
Acta Crystallogr F Struct Biol Commun, 74, 2018
7XTN
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Crystal structure of the C-terminal domain of Bombyx mori N-acetylglucosaminyltransferase IV in complex with N-acetylglucosamine
分子名称: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, N-acetylglucosaminyltransferase IV
著者Miyazaki, T, Oka, N, Mori, S.
登録日2022-05-17
公開日2022-09-28
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.15 Å)
主引用文献Crystal structure and sugar-binding ability of the C-terminal domain of N-acetylglucosaminyltransferase IV establish a new carbohydrate-binding module family.
Glycobiology, 32, 2022
7XTM
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Crystal structure of the C-terminal domain of Bombyx mori N-acetylglucosaminyltransferase IV
分子名称: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, N-acetylglucosaminyltransferase IV
著者Miyazaki, T, Oka, N, Mori, S.
登録日2022-05-17
公開日2022-09-28
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.47 Å)
主引用文献Crystal structure and sugar-binding ability of the C-terminal domain of N-acetylglucosaminyltransferase IV establish a new carbohydrate-binding module family.
Glycobiology, 32, 2022
7XTL
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Crystal structure of the C-terminal domain of human N-acetylglucosaminyltransferase IVa
分子名称: Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A soluble form
著者Miyazaki, T, Oka, N, Mori, S.
登録日2022-05-17
公開日2022-09-28
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.972 Å)
主引用文献Crystal structure and sugar-binding ability of the C-terminal domain of N-acetylglucosaminyltransferase IV establish a new carbohydrate-binding module family.
Glycobiology, 32, 2022
5MP7
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Crystal structure of phosphoribosylpyrophosphate synthetase from Mycobacterium smegmatis
分子名称: ACETATE ION, Ribose-phosphate pyrophosphokinase
著者Donini, S, Garavaglia, S, Ferraris, D.M, Miggiano, R, Mori, S, Shibayama, K, Rizzi, M.
登録日2016-12-16
公開日2017-04-26
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Biochemical and structural investigations on phosphoribosylpyrophosphate synthetase from Mycobacterium smegmatis.
PLoS ONE, 12, 2017
1WOQ
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Crystal Structure of Inorganic Polyphosphate/ATP-Glucomannokinase From Arthrobacter sp. strain KM At 1.8 A Resolution
分子名称: Inorganic polyphosphate/ATP-glucomannokinase, PHOSPHATE ION, beta-D-glucopyranose
著者Mukai, T, Kawai, S, Mori, S, Mikami, B, Murata, K.
登録日2004-08-24
公開日2004-09-28
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal Structure of Bacterial Inorganic Polyphosphate/ATP-glucomannokinase: INSIGHTS INTO KINASE EVOLUTION
J.Biol.Chem., 279, 2004
4H4P
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Crystal Structure of Ferredoxin reductase, BphA4 E175Q/Q177K mutant (oxidized form)
分子名称: Biphenyl dioxygenase ferredoxin reductase subunit, FLAVIN-ADENINE DINUCLEOTIDE, FORMIC ACID, ...
著者Nishizawa, A, Harada, A, Senda, M, Tachihara, Y, Muramatsu, D, Kishigami, S, Mori, S, Sugiyama, K, Senda, T, Kimura, S.
登録日2012-09-18
公開日2013-10-09
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.502 Å)
主引用文献Random Mutagenesis with the Project Assessment for Complete Conversion of Co-Factor Specificity of a Ferredoxin Reductase BphA4
To be Published
4H4X
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Crystal Structure of Ferredoxin reductase, BphA4 E175A/T176R/Q177G mutant (oxidized form)
分子名称: Biphenyl dioxygenase ferredoxin reductase subunit, FLAVIN-ADENINE DINUCLEOTIDE, FORMIC ACID, ...
著者Nishizawa, A, Harada, A, Senda, M, Tachihara, Y, Muramatsu, D, Kishigami, S, Mori, S, Sugiyama, K, Senda, T, Kimura, S.
登録日2012-09-18
公開日2013-10-09
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Random Mutagenesis with the Project Assessment for Complete Conversion of Co-Factor Specificity of a Ferredoxin Reductase BphA4
To be Published

 

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