2PC5
 
 | | Native crystal structure analysis on Arabidopsis dUTPase | | Descriptor: | DUTP pyrophosphatase-like protein, MAGNESIUM ION | | Authors: | Moriyama, H, Bajaj, M. | | Deposit date: | 2007-03-29 | | Release date: | 2008-02-12 | | Last modified: | 2023-08-30 | | Method: | X-RAY DIFFRACTION (2.2 Å) | | Cite: | Purification, crystallization and preliminary crystallographic analysis of deoxyuridine triphosphate nucleotidohydrolase from Arabidopsis thaliana.
Acta Crystallogr.,Sect.F, 63, 2007
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3UAD
 | | Multicopper Oxidase CueO mutant C500SE506Q (data5) | | Descriptor: | ACETATE ION, Blue copper oxidase CueO, COPPER (II) ION, ... | | Authors: | Komori, H, Kataoka, K, Sakurai, T, Higuchi, Y. | | Deposit date: | 2011-10-21 | | Release date: | 2012-04-11 | | Last modified: | 2024-03-20 | | Method: | X-RAY DIFFRACTION (1.1 Å) | | Cite: | An O-centered structure of the trinuclear copper center in the Cys500Ser/Glu506Gln mutant of CueO and structural changes in low to high X-ray dose conditions.
Angew.Chem.Int.Ed.Engl., 51, 2012
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4NER
 | | Multicopper Oxidase CueO (data1) | | Descriptor: | Blue copper oxidase CueO, COPPER (II) ION, HYDROXIDE ION, ... | | Authors: | Komori, H, Kataoka, K, Sakurai, T, Higuchi, Y. | | Deposit date: | 2013-10-30 | | Release date: | 2014-03-12 | | Last modified: | 2024-03-20 | | Method: | X-RAY DIFFRACTION (1.6 Å) | | Cite: | New insights into the catalytic active-site structure of multicopper oxidases.
Acta Crystallogr.,Sect.D, 70, 2014
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4HAL
 | | Multicopper Oxidase CueO mutant E506I | | Descriptor: | ACETATE ION, Blue copper oxidase CueO, COPPER (II) ION, ... | | Authors: | Komori, H, Kataoka, K, Sakurai, T, Higuchi, Y. | | Deposit date: | 2012-09-26 | | Release date: | 2013-10-30 | | Last modified: | 2024-03-20 | | Method: | X-RAY DIFFRACTION (1.4 Å) | | Cite: | Multicopper Oxidase CueO mutant E506I
TO BE PUBLISHED
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3A5Q
 | | Benzalacetone synthase from Rheum palmatum | | Descriptor: | Benzalacetone synthase | | Authors: | Morita, H, Kato, R, Abe, I, Sugio, S, Kohno, T. | | Deposit date: | 2009-08-10 | | Release date: | 2010-01-26 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (1.8 Å) | | Cite: | A structure-based mechanism for benzalacetone synthase from Rheum palmatum
Proc.Natl.Acad.Sci.USA, 107, 2010
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3A5S
 | | Benzalacetone synthase (I207L/L208F) | | Descriptor: | Benzalacetone synthase | | Authors: | Morita, H, Kato, R, Abe, I, Sugio, S, Kohno, T. | | Deposit date: | 2009-08-10 | | Release date: | 2010-01-26 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (1.8 Å) | | Cite: | A structure-based mechanism for benzalacetone synthase from Rheum palmatum
Proc.Natl.Acad.Sci.USA, 107, 2010
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3ALE
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4HAK
 | | Multicopper Oxidase CueO mutant E506A | | Descriptor: | ACETATE ION, Blue copper oxidase CueO, COPPER (II) ION, ... | | Authors: | Komori, H, Kataoka, K, Sakurai, T, Higuchi, Y. | | Deposit date: | 2012-09-26 | | Release date: | 2013-10-30 | | Last modified: | 2024-03-20 | | Method: | X-RAY DIFFRACTION (1.4 Å) | | Cite: | Multicopper Oxidase CueO mutant E506A
TO BE PUBLISHED
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3A5R
 | | Benzalacetone synthase from Rheum palmatum complexed with 4-coumaroyl-primed monoketide intermediate | | Descriptor: | 4'-HYDROXYCINNAMIC ACID, Benzalacetone synthase | | Authors: | Morita, H, Kato, R, Abe, I, Sugio, S, Kohno, T. | | Deposit date: | 2009-08-10 | | Release date: | 2010-01-26 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (1.6 Å) | | Cite: | A structure-based mechanism for benzalacetone synthase from Rheum palmatum
Proc.Natl.Acad.Sci.USA, 107, 2010
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1IQU
 | | Crystal structure of photolyase-thymine complex | | Descriptor: | FLAVIN-ADENINE DINUCLEOTIDE, PHOSPHATE ION, THYMINE, ... | | Authors: | Komori, H, Masui, R, Kuramitsu, S, Yokoyama, S, Shibata, T, Inoue, Y, Miki, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | Deposit date: | 2001-08-03 | | Release date: | 2002-05-08 | | Last modified: | 2023-10-25 | | Method: | X-RAY DIFFRACTION (2.2 Å) | | Cite: | Crystal structure of thermostable DNA photolyase: pyrimidine-dimer recognition mechanism.
Proc.Natl.Acad.Sci.USA, 98, 2001
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1IQR
 | | Crystal structure of DNA photolyase from Thermus thermophilus | | Descriptor: | FLAVIN-ADENINE DINUCLEOTIDE, PHOSPHATE ION, photolyase | | Authors: | Komori, H, Masui, R, Kuramitsu, S, Yokoyama, S, Shibata, T, Inoue, Y, Miki, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | Deposit date: | 2001-07-27 | | Release date: | 2001-11-28 | | Last modified: | 2023-12-27 | | Method: | X-RAY DIFFRACTION (2.1 Å) | | Cite: | Crystal structure of thermostable DNA photolyase: pyrimidine-dimer recognition mechanism.
Proc.Natl.Acad.Sci.USA, 98, 2001
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7EIX
 | | Human histidine decarboxylase mutant Y334F | | Descriptor: | Histidine decarboxylase, PYRIDOXAL-5'-PHOSPHATE, SULFATE ION | | Authors: | Komori, H. | | Deposit date: | 2021-04-01 | | Release date: | 2022-04-06 | | Last modified: | 2023-11-29 | | Method: | X-RAY DIFFRACTION (1.9 Å) | | Cite: | Structural analysis of the HDC Y334F mutant
J Biol Macromol, 21, 2021
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7EIY
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7EIW
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7FFG
 | | Diarylpentanoid-producing polyketide synthase (N199F mutant) | | Descriptor: | Type III polyketide synthase | | Authors: | Morita, H, Wong, C.P, Liu, Q, Kodama, T, Lee, Y, Nakashima, Y. | | Deposit date: | 2021-07-23 | | Release date: | 2022-01-19 | | Last modified: | 2023-11-29 | | Method: | X-RAY DIFFRACTION (2.3 Å) | | Cite: | Identification of a diarylpentanoid-producing polyketide synthase revealing an unusual biosynthetic pathway of 2-(2-phenylethyl)chromones in agarwood.
Nat Commun, 13, 2022
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7FFA
 | | Diarylpentanoid-producing polyketide synthase from Aquilaria sinensis | | Descriptor: | Type III polyketide synthase | | Authors: | Morita, H, Wong, C.P, Liu, Q, Kodama, T, Lee, Y, Nakashima, Y. | | Deposit date: | 2021-07-23 | | Release date: | 2022-01-19 | | Last modified: | 2023-11-29 | | Method: | X-RAY DIFFRACTION (1.98 Å) | | Cite: | Identification of a diarylpentanoid-producing polyketide synthase revealing an unusual biosynthetic pathway of 2-(2-phenylethyl)chromones in agarwood.
Nat Commun, 13, 2022
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7FFI
 | | Diarylpentanoid-producing polyketide synthase (F340W mutant) | | Descriptor: | Type III polyketide synthase | | Authors: | Morita, H, Wong, C.P, Liu, Q, Kodama, T, Lee, Y, Nakashima, Y. | | Deposit date: | 2021-07-23 | | Release date: | 2022-01-19 | | Last modified: | 2023-11-29 | | Method: | X-RAY DIFFRACTION (2.4 Å) | | Cite: | Identification of a diarylpentanoid-producing polyketide synthase revealing an unusual biosynthetic pathway of 2-(2-phenylethyl)chromones in agarwood.
Nat Commun, 13, 2022
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7FFC
 | | Diarylpentanoid-producing polyketide synthase (A210E mutant) | | Descriptor: | GLYCEROL, Type III polyketide synthase | | Authors: | Morita, H, Wong, C.P, Liu, Q, Kodama, T, Lee, Y, Nakashima, Y. | | Deposit date: | 2021-07-23 | | Release date: | 2022-01-19 | | Last modified: | 2023-11-29 | | Method: | X-RAY DIFFRACTION (2.61 Å) | | Cite: | Identification of a diarylpentanoid-producing polyketide synthase revealing an unusual biosynthetic pathway of 2-(2-phenylethyl)chromones in agarwood.
Nat Commun, 13, 2022
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7FFH
 | | Diarylpentanoid-producing polyketide synthase (N199L mutant) | | Descriptor: | Type III polyketide synthase | | Authors: | Morita, H, Wong, C.P, Liu, Q, Takeshi, K, Lee, Y, Nakashima, Y. | | Deposit date: | 2021-07-23 | | Release date: | 2022-01-19 | | Last modified: | 2023-11-29 | | Method: | X-RAY DIFFRACTION (2.2 Å) | | Cite: | Identification of a diarylpentanoid-producing polyketide synthase revealing an unusual biosynthetic pathway of 2-(2-phenylethyl)chromones in agarwood.
Nat Commun, 13, 2022
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3AWK
 | | Crystal structure of the polyketide synthase 1 from huperzia serrata | | Descriptor: | Chalcone synthase-like polyketide synthase, GLYCEROL, SULFATE ION | | Authors: | Morita, H, Kondo, S, Kato, R, Sugio, S, Kohno, T, Abe, I. | | Deposit date: | 2011-03-23 | | Release date: | 2011-08-31 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (2 Å) | | Cite: | Synthesis of unnatural alkaloid scaffolds by exploiting plant polyketide synthase.
Proc.Natl.Acad.Sci.USA, 108, 2011
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3AWJ
 | | Crystal structure of the Huperzia serrata polyketide synthase 1 complexed with CoA-SH | | Descriptor: | COENZYME A, Chalcone synthase-like polyketide synthase, SULFATE ION | | Authors: | Morita, H, Kondo, S, Kato, R, Sugio, S, Kohno, T, Abe, I. | | Deposit date: | 2011-03-23 | | Release date: | 2011-08-31 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (2.2 Å) | | Cite: | Synthesis of unnatural alkaloid scaffolds by exploiting plant polyketide synthase.
Proc.Natl.Acad.Sci.USA, 108, 2011
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2ZWN
 | | Crystal structure of the novel two-domain type laccase from a metagenome | | Descriptor: | CHLORIDE ION, COPPER (II) ION, CU-O-CU LINKAGE, ... | | Authors: | Komori, H, Miyazaki, K, Higuchi, Y. | | Deposit date: | 2008-12-17 | | Release date: | 2009-04-07 | | Last modified: | 2024-03-13 | | Method: | X-RAY DIFFRACTION (1.7 Å) | | Cite: | X-ray structure of a two-domain type laccase: a missing link in the evolution of multi-copper proteins
Febs Lett., 583, 2009
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5XHU
 | | Crystal structure of ycgT from bacillus subtilis | | Descriptor: | FLAVIN-ADENINE DINUCLEOTIDE, Ferredoxin--NADP reductase | | Authors: | Komori, H. | | Deposit date: | 2017-04-24 | | Release date: | 2018-05-02 | | Last modified: | 2024-03-27 | | Method: | X-RAY DIFFRACTION (2.1 Å) | | Cite: | Crystal structure of ycgT from bacillus subtilis
To Be Published
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5GQI
 | | Crystal structure of Cypovirus Polyhedra mutant with deletion of Ala194 | | Descriptor: | 1,2-ETHANEDIOL, ADENOSINE-5'-TRIPHOSPHATE, CHLORIDE ION, ... | | Authors: | Abe, S, Tabe, H, Ijiri, H, Yamashita, K, Hirata, K, Mori, H, Ueno, T. | | Deposit date: | 2016-08-07 | | Release date: | 2017-02-15 | | Last modified: | 2023-11-08 | | Method: | X-RAY DIFFRACTION (1.3 Å) | | Cite: | Crystal Engineering of Self-Assembled Porous Protein Materials in Living Cells
ACS Nano, 11, 2017
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5GQJ
 | | Crystal structure of Cypovirus Polyhedra mutant with deletion of Ser193 and Ala194 | | Descriptor: | 1,2-ETHANEDIOL, ADENOSINE-5'-TRIPHOSPHATE, CHLORIDE ION, ... | | Authors: | Abe, S, Tabe, H, Ijiri, H, Yamashita, K, Hirata, K, Mori, H, Ueno, T. | | Deposit date: | 2016-08-07 | | Release date: | 2017-02-15 | | Last modified: | 2023-11-08 | | Method: | X-RAY DIFFRACTION (1.5 Å) | | Cite: | Crystal Engineering of Self-Assembled Porous Protein Materials in Living Cells
ACS Nano, 11, 2017
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