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PDB: 287 件
3WEM
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Sugar beet alpha-glucosidase with acarviosyl-maltotetraose
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, Alpha-glucosidase, ...
著者Tagami, T, Yamashita, K, Okuyama, M, Mori, H, Yao, M, Kimura, A.
登録日2013-07-09
公開日2014-07-16
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.591 Å)
主引用文献Structural advantage of sugar beet alpha-glucosidase to stabilize the Michaelis complex with long-chain substrate
J.Biol.Chem., 290, 2014
3W7X
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Crystal structure of E. coli YgjK D324N complexed with melibiose
分子名称: CALCIUM ION, Uncharacterized protein YgjK, alpha-D-galactopyranose-(1-6)-alpha-D-glucopyranose
著者Miyazaki, T, Ichikawa, M, Yokoi, G, Kitaoka, M, Mori, H, Kitano, Y, Nishikawa, A, Tonozuka, T.
登録日2013-03-08
公開日2013-07-17
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Structure of a bacterial glycoside hydrolase family 63 enzyme in complex with its glycosynthase product, and insights into the substrate specificity.
Febs J., 280, 2013
3WEL
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Sugar beet alpha-glucosidase with acarviosyl-maltotriose
分子名称: 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, Alpha-glucosidase, GLYCEROL, ...
著者Tagami, T, Yamashita, K, Okuyama, M, Mori, H, Yao, M, Kimura, A.
登録日2013-07-08
公開日2014-07-16
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献Structural advantage of sugar beet alpha-glucosidase to stabilize the Michaelis complex with long-chain substrate
J.Biol.Chem., 290, 2014
3WEN
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BU of 3wen by Molmil
Sugar beet alpha-glucosidase with acarviosyl-maltopentaose
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, Alpha-glucosidase, ...
著者Tagami, T, Yamashita, K, Okuyama, M, Mori, H, Yao, M, Kimura, A.
登録日2013-07-09
公開日2014-07-16
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.59 Å)
主引用文献Structural advantage of sugar beet alpha-glucosidase to stabilize the Michaelis complex with long-chain substrate
J.Biol.Chem., 290, 2014
3CA9
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Evolution of chlorella virus dUTPase
分子名称: DEOXYURIDINE-5'-DIPHOSPHATE, Deoxyuridine triphosphatase, MAGNESIUM ION
著者Yamanishi, M, Homma, K, Zhang, Y, Etten, L.V.J, Moriyama, H.
登録日2008-02-19
公開日2009-03-03
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Crystallization and crystal-packing studies of Chlorella virus deoxyuridine triphosphatase.
Acta Crystallogr.,Sect.F, 65, 2009
1VDZ
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BU of 1vdz by Molmil
Crystal structure of A-type ATPase catalytic subunit A from Pyrococcus horikoshii OT3
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, A-type ATPase subunit A
著者Maegawa, Y, Morita, H, Yao, M, Watanabe, N, Tanaka, I.
登録日2004-03-26
公開日2005-06-21
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.55 Å)
主引用文献Crystal structure of A-type ATPase catalytic subunit A from Pyrococcus horikoshii OT3
To be Published
4OOP
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BU of 4oop by Molmil
Arabidopsis thaliana dUTPase with with magnesium and alpha,beta-imido-dUTP
分子名称: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, Deoxyuridine 5'-triphosphate nucleotidohydrolase, MAGNESIUM ION
著者Inoguchi, N, Bajaj, M, Moriyama, H.
登録日2014-02-03
公開日2015-04-08
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structural insights into the mechanism defining substrate affinity in Arabidopsis thaliana dUTPase: the role of tryptophan 93 in ligand orientation.
BMC Res Notes, 8, 2015
1WNI
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BU of 1wni by Molmil
Crystal Structure of H2-Proteinase
分子名称: Trimerelysin II, ZINC ION
著者Kumasaka, T, Yamamoto, M, Moriyama, H, Tanaka, N, Sato, M, Katsube, Y, Yamakawa, Y, Omori-Satoh, T, Iwanaga, S, Ueki, T.
登録日2004-08-04
公開日2004-08-17
最終更新日2019-10-09
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of H2-proteinase from the venom of Trimeresurus flavoviridis.
J.Biochem., 119, 1996
6LFX
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Crystal structure of PCB4scFv(hN56D) in complex with PCB#77
分子名称: 1,2-bis(chloranyl)-4-(3-chloranyl-4-methoxy-phenyl)benzene, PCB4scFv(hN56D)
著者Nakamura, T, Yamagata, Y, Morioka, H.
登録日2019-12-03
公開日2020-12-09
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.43 Å)
主引用文献Crystal structure of PCB4scFv(hN56D) in complex with PCB#77
To Be Published
7CIO
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BU of 7cio by Molmil
Molecular interactions of cytoplasmic region of CTLA-4 with SH2 domains of PI3-kinase
分子名称: Cytotoxic T-lymphocyte protein 4, Phosphatidylinositol 3-kinase regulatory subunit alpha
著者Iiyama, M, Numoto, N, Ogawa, S, Kuroda, M, Morii, H, Abe, R, Ito, N, Oda, M.
登録日2020-07-08
公開日2020-12-09
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献Molecular interactions of the CTLA-4 cytoplasmic region with the phosphoinositide 3-kinase SH2 domains.
Mol.Immunol., 131, 2021
2FFN
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BU of 2ffn by Molmil
The E41Q mutant of tetraheme cytochrome c3 from Desulfovibrio Vulgaris Miyazaki F
分子名称: Cytochrome c3, PROTOPORPHYRIN IX CONTAINING FE
著者Higuchi, Y, Komori, H, Morita, K.
登録日2005-12-20
公開日2006-12-05
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Roles of charged residues in pH-dependent redox properties of cytochrome c3 from Desulfovibrio vulgaris Miyazaki F
BIOPHYSICS(BSJ), 2, 2006
1GE9
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BU of 1ge9 by Molmil
SOLUTION STRUCTURE OF THE RIBOSOME RECYCLING FACTOR
分子名称: RIBOSOME RECYCLING FACTOR
著者Yoshida, T, Uchiyama, S, Nakano, H, Kashimori, H, Kijima, H, Ohshima, T, Saihara, Y, Ishino, T, Shimahara, T, Yoshida, T, Yokose, K, Ohkubo, T, Kaji, A, Kobayashi, Y.
登録日2000-10-19
公開日2001-05-16
最終更新日2023-12-27
実験手法SOLUTION NMR
主引用文献Solution structure of the ribosome recycling factor from Aquifex aeolicus.
Biochemistry, 40, 2001
1QSH
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BU of 1qsh by Molmil
MAGNESIUM(II)-AND ZINC(II)-PROTOPORPHYRIN IX'S STABILIZE THE LOWEST OXYGEN AFFINITY STATE OF HUMAN HEMOGLOBIN EVEN MORE STRONGLY THAN DEOXYHEME
分子名称: PROTEIN (HEMOGLOBIN ALPHA CHAIN), PROTEIN (HEMOGLOBIN BETA CHAIN), PROTOPORPHYRIN IX CONTAINING FE, ...
著者Miyazaki, G, Morimoto, H, Yun, K.-M, Park, S.-Y, Nakagawa, A, Minagawa, H, Shibayama, N.
登録日1999-06-22
公開日1999-07-02
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Magnesium(II) and zinc(II)-protoporphyrin IX's stabilize the lowest oxygen affinity state of human hemoglobin even more strongly than deoxyheme.
J.Mol.Biol., 292, 1999
1QSI
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BU of 1qsi by Molmil
MAGNESIUM(II)-AND ZINC(II)-PROTOPORPHYRIN IX'S STABILIZE THE LOWEST OXYGEN AFFINITY STATE OF HUMAN HEMOGLOBIN EVEN MORE STRONGLY THAN DEOXYHEME
分子名称: CARBON MONOXIDE, PROTEIN (HEMOGLOBIN ALPHA CHAIN), PROTEIN (HEMOGLOBIN BETA CHAIN), ...
著者Miyazaki, G, Morimoto, H, Yun, K.-M, Park, S.-Y, Nakagawa, A, Minagawa, H, Shibayama, N.
登録日1999-06-22
公開日1999-07-02
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Magnesium(II) and zinc(II)-protoporphyrin IX's stabilize the lowest oxygen affinity state of human hemoglobin even more strongly than deoxyheme.
J.Mol.Biol., 292, 1999
2EWK
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BU of 2ewk by Molmil
The T24V mutant of tetraheme cytochrome c3 from Desulfovibrio Vulgaris Miyazaki F
分子名称: Cytochrome c3, PROTOPORPHYRIN IX CONTAINING FE
著者Higuchi, Y, Komori, H, Morita, K.
登録日2005-11-03
公開日2006-11-28
最終更新日2021-11-10
実験手法X-RAY DIFFRACTION (1 Å)
主引用文献Strategic roles of axial histidines in structure formation and redox regulation of tetraheme cytochrome c3.
Biochemistry, 47, 2008
3NBS
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Crystal structure of dimeric cytochrome c from horse heart
分子名称: Cytochrome c, DI(HYDROXYETHYL)ETHER, HEME C, ...
著者Taketa, M, Komori, H, Hirota, S, Higuchi, Y.
登録日2010-06-04
公開日2010-07-14
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Cytochrome c polymerization by successive domain swapping at the C-terminal helix
Proc.Natl.Acad.Sci.USA, 107, 2010
3NBT
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Crystal structure of trimeric cytochrome c from horse heart
分子名称: Cytochrome c, DI(HYDROXYETHYL)ETHER, HEME C, ...
著者Taketa, M, Komori, H, Hirota, S, Higuchi, Y.
登録日2010-06-04
公開日2010-07-14
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Cytochrome c polymerization by successive domain swapping at the C-terminal helix
Proc.Natl.Acad.Sci.USA, 107, 2010
1WUJ
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Three-Dimensional Structure Of The Ni-B State Of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F
分子名称: FE3-S4 CLUSTER, IRON/SULFUR CLUSTER, MAGNESIUM ION, ...
著者Ogata, H, Hirota, S, Nakahara, A, Komori, H, Shibata, N, Kato, T, Kano, K, Higuchi, Y.
登録日2004-12-07
公開日2005-12-07
最終更新日2019-09-04
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Activation process of [NiFe] hydrogenase elucidated by high-resolution X-Ray analyses: conversion of the ready to the unready state
Structure, 13, 2005
1WUH
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Three-Dimensional Structure Of The Ni-A State Of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, FE3-S4 CLUSTER, IRON/SULFUR CLUSTER, ...
著者Ogata, H, Hirota, S, Nakahara, A, Komori, H, Shibata, N, Kato, T, Kano, K, Higuchi, Y.
登録日2004-12-07
公開日2005-12-07
最終更新日2019-09-04
実験手法X-RAY DIFFRACTION (1.24 Å)
主引用文献Structural basis for the activation process of [NiFe] hydrogenase from D.vulgaris Miyazaki F
To be Published
5KER
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BU of 5ker by Molmil
Deer mouse recombinant hemoglobin from high altitude species
分子名称: Alpha-globin, Beta globin, PROTOPORPHYRIN IX CONTAINING FE
著者Inoguchi, N, Natarajan, C, Storz, J.F, Moriyama, H.
登録日2016-06-10
公開日2017-04-05
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.202 Å)
主引用文献Alteration of the alpha 1 beta 2/ alpha 2 beta 1 subunit interface contributes to the increased hemoglobin-oxygen affinity of high-altitude deer mice.
PLoS ONE, 12, 2017
1WUK
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High resolution Structure Of The Oxidized State Of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F
分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, FE3-S4 CLUSTER, IRON/SULFUR CLUSTER, ...
著者Ogata, H, Hirota, S, Nakahara, A, Komori, H, Shibata, N, Kato, T, Kano, K, Higuchi, Y.
登録日2004-12-07
公開日2005-12-07
最終更新日2019-09-04
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献Activation process of [NiFe] hydrogenase elucidated by high-resolution X-Ray analyses: conversion of the ready to the unready state
Structure, 13, 2005
1WUL
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High Resolution Structure Of The Reduced State Of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F
分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, FE3-S4 CLUSTER, ...
著者Ogata, H, Hirota, S, Nakahara, A, Komori, H, Shibata, N, Kato, T, Kano, K, Higuchi, Y.
登録日2004-12-07
公開日2005-12-07
最終更新日2019-09-04
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Activation process of [NiFe] hydrogenase elucidated by high-resolution X-Ray analyses: conversion of the ready to the unready state
Structure, 13, 2005
1WUI
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Ultra-High resolution Structure Of The Ni-A State Of [Nife]Hydrogenase From Desulufovibrio Vulgaris Miyazaki F
分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, FE3-S4 CLUSTER, ...
著者Ogata, H, Hirota, S, Nakahara, A, Komori, H, Shibata, N, Kato, T, Kano, K, Higuchi, Y.
登録日2004-12-07
公開日2005-12-07
最終更新日2019-09-04
実験手法X-RAY DIFFRACTION (1.04 Å)
主引用文献Activation process of [NiFe] hydrogenase elucidated by high-resolution X-Ray analyses: conversion of the ready to the unready state
Structure, 13, 2005
8GQ9
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Crystal structure of lasso peptide epimerase MslH
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, GLYCEROL, ...
著者Nakashima, Y, Morita, H.
登録日2022-08-29
公開日2023-06-21
最終更新日2023-08-23
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure of lasso peptide epimerase MslH reveals metal-dependent acid/base catalytic mechanism.
Nat Commun, 14, 2023
8GQB
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Crystal structure of lasso peptide epimerase MslH D11A mutant
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ...
著者Nakashima, Y, Morita, H.
登録日2022-08-29
公開日2023-06-21
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.41 Å)
主引用文献Structure of lasso peptide epimerase MslH reveals metal-dependent acid/base catalytic mechanism.
Nat Commun, 14, 2023

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