1UMI
 
 | | Structural basis of sugar-recognizing ubiquitin ligase | | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose, F-box only protein 2 | | 著者 | Mizushima, T, Hirao, T, Yoshida, Y, Lee, S.J, Chiba, T, Iwai, K, Yamaguchi, Y, Kato, K, Tsukihara, T, Tanaka, K. | | 登録日 | 2003-10-01 | | 公開日 | 2004-04-06 | | 最終更新日 | 2023-12-27 | | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | | 主引用文献 | Structural basis of sugar-recognizing ubiquitin ligase.
Nat.Struct.Mol.Biol., 11, 2004
|
|
1UMH
 | | Structural basis of sugar-recognizing ubiquitin ligase | | 分子名称: | F-box only protein 2, NICKEL (II) ION | | 著者 | Mizushima, T, Hirao, T, Yoshida, Y, Lee, S.J, Chiba, T, Iwai, K, Yamaguchi, Y, Kato, K, Tsukihara, T, Tanaka, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | | 登録日 | 2003-10-01 | | 公開日 | 2004-04-06 | | 最終更新日 | 2023-12-27 | | 実験手法 | X-RAY DIFFRACTION (2 Å) | | 主引用文献 | Structural basis of sugar-recognizing ubiquitin ligase
NAT.STRUCT.MOL.BIOL., 11, 2004
|
|
1WZV
 | | Crystal Structure of UbcH8 | | 分子名称: | Ubiquitin-conjugating enzyme E2 L6 | | 著者 | Mizushima, T, Suzuki, M, Teshima, N, Yamane, T, Murata, S, Tanaka, K. | | 登録日 | 2005-03-10 | | 公開日 | 2005-03-22 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (2.1 Å) | | 主引用文献 | Crystal Structure of UbcH8
To be Published
|
|
1WZW
 | | Crystal Structure of UbcH8 | | 分子名称: | Ubiquitin-conjugating enzyme E2 L6 | | 著者 | Mizushima, T, Suzuki, M, Teshima, N, Yamane, T, Murata, S, Tanaka, K. | | 登録日 | 2005-03-10 | | 公開日 | 2005-03-22 | | 最終更新日 | 2024-03-13 | | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | | 主引用文献 | Crystal Structure of UbcH8
To be Published
|
|
2Z6P
 | | Crystal Structure of the Ufc1, Ufm1 conjugating enzyme 1 | | 分子名称: | Ufm1-conjugating enzyme 1 | | 著者 | Mizushima , T, Tatsumi, K, Ozaki, Y, Kawakami, T, Suzuki, A, Ogasahara, K, Komatsu, M, Kominami, E, Tanaka, K, Yamane, T. | | 登録日 | 2007-08-06 | | 公開日 | 2007-09-25 | | 最終更新日 | 2011-07-13 | | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | | 主引用文献 | Crystal structure of Ufc1, the Ufm1-conjugating enzyme
Biochem.Biophys.Res.Commun., 362, 2007
|
|
2Z6O
 | | Crystal Structure of the Ufc1, Ufm1 conjugating enzyme 1 | | 分子名称: | MAGNESIUM ION, Ufm1-conjugating enzyme 1 | | 著者 | Mizushima , T, Tatsumi, K, Ozaki, Y, Kawakami, T, Suzuki, A, Ogasahara, K, Komatsu, M, Kominami, E, Tanaka, K, Yamane, T. | | 登録日 | 2007-08-06 | | 公開日 | 2007-09-25 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (1.6 Å) | | 主引用文献 | Crystal structure of Ufc1, the Ufm1-conjugating enzyme
Biochem.Biophys.Res.Commun., 362, 2007
|
|
2E33
 | | Structural basis for selection of glycosylated substrate by SCFFbs1 ubiquitin ligase | | 分子名称: | F-box only protein 2, Ribonuclease pancreatic, alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | | 著者 | Mizushima, T, Yoshida, Y, Kumanomidou, T, Hasegawa, Y, Yamane, T, Tanaka, K. | | 登録日 | 2006-11-20 | | 公開日 | 2007-03-20 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (2.7 Å) | | 主引用文献 | Structural basis for the selection of glycosylated substrates by SCFFbs1 ubiquitin ligase
Proc.Natl.Acad.Sci.Usa, 104, 2007
|
|
2E31
 | | Structural basis for selection of glycosylated substrate by SCFFbs1 ubiquitin ligase | | 分子名称: | F-box only protein 2, S-phase kinase-associated protein 1A | | 著者 | Mizushima, T, Yoshida, Y, Kumanomidou, T, Hasegawa, Y, Yamane, T, Tanaka, K. | | 登録日 | 2006-11-20 | | 公開日 | 2007-03-20 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (2.4 Å) | | 主引用文献 | Structural basis for the selection of glycosylated substrates by SCFFbs1 ubiquitin ligase
Proc.Natl.Acad.Sci.Usa, 104, 2007
|
|
2E32
 | | Structural basis for selection of glycosylated substrate by SCFFbs1 ubiquitin ligase | | 分子名称: | F-box only protein 2, S-phase kinase-associated protein 1A | | 著者 | Mizushima, T, Yoshida, Y, Kumanomidou, T, Hasegawa, Y, Yamane, T, Tanaka, K. | | 登録日 | 2006-11-20 | | 公開日 | 2007-03-20 | | 最終更新日 | 2023-10-25 | | 実験手法 | X-RAY DIFFRACTION (3.52 Å) | | 主引用文献 | Structural basis for the selection of glycosylated substrates by SCFFbs1 ubiquitin ligase
Proc.Natl.Acad.Sci.Usa, 104, 2007
|
|
3AY4
 | | Crystal structure of nonfucosylated Fc complexed with bis-glycosylated soluble form of Fc gamma receptor IIIa | | 分子名称: | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, Ig gamma-1 chain C region, Low affinity immunoglobulin gamma Fc region receptor III-A, ... | | 著者 | Mizushima, T, Takemoto, E, Yagi, H, Shibata-Koyama, M, Isoda, Y, Iida, S, Satoh, M, Kato, K. | | 登録日 | 2011-04-28 | | 公開日 | 2011-08-03 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | | 主引用文献 | Structural basis for improved efficacy of therapeutic antibodies on defucosylation of their Fc glycans
Genes Cells, 16, 2011
|
|
1DDZ
 | | X-RAY STRUCTURE OF A BETA-CARBONIC ANHYDRASE FROM THE RED ALGA, PORPHYRIDIUM PURPUREUM R-1 | | 分子名称: | CARBONIC ANHYDRASE, ZINC ION | | 著者 | Mitsuhashi, S, Mizushima, T, Yamashita, E, Miyachi, S, Tsukihara, T. | | 登録日 | 1999-11-12 | | 公開日 | 2000-03-08 | | 最終更新日 | 2024-02-07 | | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | | 主引用文献 | X-ray structure of beta-carbonic anhydrase from the red alga, Porphyridium purpureum, reveals a novel catalytic site for CO(2) hydration.
J.Biol.Chem., 275, 2000
|
|
4DBG
 | | Crystal structure of HOIL-1L-UBL complexed with a HOIP-UBA derivative | | 分子名称: | RING finger protein 31, RanBP-type and C3HC4-type zinc finger-containing protein 1 | | 著者 | Yagi, H, Hiromoto, T, Mizushima, T, Kurimoto, E, Kato, K. | | 登録日 | 2012-01-15 | | 公開日 | 2012-04-04 | | 最終更新日 | 2012-05-16 | | 実験手法 | X-RAY DIFFRACTION (2.71 Å) | | 主引用文献 | A non-canonical UBA-UBL interaction forms the linear-ubiquitin-chain assembly complex
Embo Rep., 13, 2012
|
|
3RKS
 | | Crystal Structure of the Manihot esculenta Hydroxynitrile Lyase (MeHNL) K176P mutant | | 分子名称: | GLYCEROL, Hydroxynitrilase | | 著者 | Cielo, C.B.C, Yamane, T, Asano, Y, Dadashipour, M, Suzuki, A, Mizushima, T, Komeda, H. | | 登録日 | 2011-04-18 | | 公開日 | 2012-06-20 | | 最終更新日 | 2024-03-20 | | 実験手法 | X-RAY DIFFRACTION (2.5 Å) | | 主引用文献 | Crystallographic Studies of Manihot esculenta hydroxynitrile lyase Lysine-to-Proline mutants
To be Published
|
|
2RJ2
 | | Crystal Structure of the Sugar Recognizing SCF Ubiquitin Ligase at 1.7 Resolution | | 分子名称: | CHLORIDE ION, F-box only protein 2, NICKEL (II) ION | | 著者 | Vaijayanthimala, S, Velmurugan, D, Mizushima, T, Yamane, T, Yoshida, Y, Tanaka, K. | | 登録日 | 2007-10-14 | | 公開日 | 2008-10-14 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (1.7 Å) | | 主引用文献 | Crystal Structure of the Sugar Recognizing SCF Ubiquitin Ligase at 1.7 Resolution
To be Published
|
|
5KH1
 | |
6K5V
 | | Structure of CSY4 Apo-form | | 分子名称: | CHLORIDE ION, Citrate synthase 4, mitochondrial | | 著者 | Nishio, K, Mizushima, T. | | 登録日 | 2019-05-31 | | 公開日 | 2020-03-18 | | 最終更新日 | 2023-11-22 | | 実験手法 | X-RAY DIFFRACTION (2.69 Å) | | 主引用文献 | Structural and biochemical characterization of mitochondrial citrate synthase 4 from Arabidopsis thaliana.
Acta Crystallogr.,Sect.F, 76, 2020
|
|
8GQZ
 | | Crystal structure of mitochondrial citrate synthase (Cit1) from Saccharomyces cerevisiae | | 分子名称: | ACETATE ION, CHLORIDE ION, Citrate synthase, ... | | 著者 | Nishio, K, Nakatsukasa, K, Kamura, T, Mizushima, T. | | 登録日 | 2022-08-31 | | 公開日 | 2023-04-26 | | 実験手法 | X-RAY DIFFRACTION (1.42 Å) | | 主引用文献 | Defective import of mitochondrial metabolic enzyme elicits ectopic metabolic stress.
Sci Adv, 9, 2023
|
|
8GRE
 | | F-box protein in complex with skp1(FL) and substrate | | 分子名称: | Citrate synthase, E3 ubiquitin ligase complex SCF subunit, F-box protein UCC1, ... | | 著者 | Nishio, K, Nakatsukasa, K, Kamura, T, Mizushima, T. | | 登録日 | 2022-09-01 | | 公開日 | 2023-04-26 | | 実験手法 | X-RAY DIFFRACTION (2.3 Å) | | 主引用文献 | Defective import of mitochondrial metabolic enzyme elicits ectopic metabolic stress.
Sci Adv, 9, 2023
|
|
8GR8
 | | Crystal structure of peroxisomal citrate synthase (Cit2) from Saccharomycescerevisiae | | 分子名称: | 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CHLORIDE ION, Citrate synthase, ... | | 著者 | Nishio, K, Nakatsukasa, K, Kamura, T, Mizushima, T. | | 登録日 | 2022-09-01 | | 公開日 | 2023-04-26 | | 実験手法 | X-RAY DIFFRACTION (2.39 Å) | | 主引用文献 | Defective import of mitochondrial metabolic enzyme elicits ectopic metabolic stress.
Sci Adv, 9, 2023
|
|
8GRF
 | | Crystal structure of F-box protein in the ternary complex with adaptor protein Skp1(DL) and its substrate | | 分子名称: | 1,2-ETHANEDIOL, Citrate synthase, E3 ubiquitin ligase complex SCF subunit, ... | | 著者 | Nishio, K, Nakatsukasa, K, Kamura, T, Mizushima, T. | | 登録日 | 2022-09-01 | | 公開日 | 2023-04-26 | | 実験手法 | X-RAY DIFFRACTION (2.53 Å) | | 主引用文献 | Defective import of mitochondrial metabolic enzyme elicits ectopic metabolic stress.
Sci Adv, 9, 2023
|
|
8GR9
 | | Crystal structure of peroxisomal citrate synthase (Cit2) from Saccharomyces cerevisiae in complex with oxaloacetate and coenzyme-A | | 分子名称: | CHLORIDE ION, COENZYME A, Citrate synthase, ... | | 著者 | Nishio, K, Nakatsukasa, K, Kamura, T, Mizushima, T. | | 登録日 | 2022-09-01 | | 公開日 | 2023-04-26 | | 実験手法 | X-RAY DIFFRACTION (1.48 Å) | | 主引用文献 | Defective import of mitochondrial metabolic enzyme elicits ectopic metabolic stress.
Sci Adv, 9, 2023
|
|
4ZY3
 | | Crystal Structure of Keap1 in Complex with a small chemical compound, K67 | | 分子名称: | FORMIC ACID, Kelch-like ECH-associated protein 1, N,N'-[2-(2-oxopropyl)naphthalene-1,4-diyl]bis(4-ethoxybenzenesulfonamide) | | 著者 | Fukutomi, T, Iso, T, Suzuki, T, Takagi, K, Mizushima, T, Komatsu, M, Yamamoto, M. | | 登録日 | 2015-05-21 | | 公開日 | 2016-05-25 | | 最終更新日 | 2023-11-08 | | 実験手法 | X-RAY DIFFRACTION (1.8 Å) | | 主引用文献 | p62/Sqstm1 promotes malignancy of HCV-positive hepatocellular carcinoma through Nrf2-dependent metabolic reprogramming
Nat Commun, 7, 2016
|
|
3HJE
 | | Crystal structure of sulfolobus tokodaii hypothetical maltooligosyl trehalose synthase | | 分子名称: | 704aa long hypothetical glycosyltransferase, GLYCEROL | | 著者 | Cielo, C.B.C, Okazaki, S, Suzuki, A, Mizushima, T, Masui, R, Kuramitsu, S, Yamane, T. | | 登録日 | 2009-05-21 | | 公開日 | 2010-04-14 | | 最終更新日 | 2023-11-01 | | 実験手法 | X-RAY DIFFRACTION (1.9 Å) | | 主引用文献 | Structure of ST0929, a putative glycosyl transferase from Sulfolobus tokodaii
Acta Crystallogr.,Sect.F, 66, 2010
|
|
1IRU
 | | Crystal Structure of the mammalian 20S proteasome at 2.75 A resolution | | 分子名称: | 20S proteasome, MAGNESIUM ION | | 著者 | Unno, M, Mizushima, T, Morimoto, Y, Tomisugi, Y, Tanaka, K, Yasuoka, N, Tsukihara, T. | | 登録日 | 2001-10-24 | | 公開日 | 2002-05-22 | | 最終更新日 | 2023-12-27 | | 実験手法 | X-RAY DIFFRACTION (2.75 Å) | | 主引用文献 | The structure of the mammalian 20S proteasome at 2.75 A resolution.
Structure, 10, 2002
|
|
5D94
 | | Crystal structure of LC3-LIR peptide complex | | 分子名称: | Microtubule-associated proteins 1A/1B light chain 3B, Peptide from FYVE and coiled-coil domain-containing protein 1 | | 著者 | Takagi, K, Mizushima, T, Johansen, T. | | 登録日 | 2015-08-18 | | 公開日 | 2015-10-21 | | 最終更新日 | 2024-03-20 | | 実験手法 | X-RAY DIFFRACTION (1.53 Å) | | 主引用文献 | FYCO1 Contains a C-terminally Extended, LC3A/B-preferring LC3-interacting Region (LIR) Motif Required for Efficient Maturation of Autophagosomes during Basal Autophagy
J.Biol.Chem., 290, 2015
|
|
