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PDB: 84 件

1PD2
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CRYSTAL STRUCTURE OF HEMATOPOIETIC PROSTAGLANDIN D SYNTHASE COMPLEX WITH GLUTATHIONE
分子名称: GLUTATHIONE, HEMATOPOIETIC PROSTAGLANDIN D SYNTHASE
著者Miyano, M, Ago, H.
登録日1998-12-14
公開日1999-10-13
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Cloning and crystal structure of hematopoietic prostaglandin D synthase.
Cell(Cambridge,Mass.), 90, 1997
2YW9
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BU of 2yw9 by Molmil
Crystal structure of TT0143 from Thermus thermophilus HB8
分子名称: Enoyl-[acyl carrier protein] reductase, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
著者Miyano, M, Ago, H, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-04-20
公開日2007-05-15
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of TT0143 from Thermus thermophilus HB8
To be Published
2ZIY
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Crystal structure of squid rhodopsin
分子名称: PALMITIC ACID, RETINAL, Rhodopsin
著者Miyano, M, Shimamura, T.
登録日2008-02-27
公開日2008-05-06
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3.7 Å)
主引用文献Crystal structure of squid rhodopsin with intracellularly extended cytoplasmic region
J.Biol.Chem., 283, 2008
1QUV
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CRYSTAL STRUCTURE OF THE RNA DIRECTED RNA POLYMERASE OF HEPATITIS C VIRUS
分子名称: PROTEIN (RNA-DIRECTED RNA POLYMERASE)
著者Ago, H, Miyano, M, Adachi, T, Habuka, N.
登録日1999-07-04
公開日1999-11-05
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of the RNA-dependent RNA polymerase of hepatitis C virus.
Structure Fold.Des., 7, 1999
3B29
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Human leukotriene C4 synthase in complex with dodecyl-beta-D-selenomaltoside
分子名称: GLUTATHIONE, Leukotriene C4 synthase, SULFATE ION, ...
著者Saino, H, Ago, H, Miyano, M.
登録日2011-07-22
公開日2011-12-14
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Seleno-detergent MAD phasing of leukotriene C4 synthase in complex with dodecyl-beta-D-selenomaltoside
Acta Crystallogr.,Sect.F, 67, 2011
1APA
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X-RAY STRUCTURE OF A POKEWEED ANTIVIRAL PROTEIN, CODED BY A NEW GENOMIC CLONE, AT 0.23 NM RESOLUTION. A MODEL STRUCTURE PROVIDES A SUITABLE ELECTROSTATIC FIELD FOR SUBSTRATE BINDING.
分子名称: POKEWEED ANTIVIRAL PROTEIN
著者Ago, H, Kataoka, J, Tsuge, H, Habuka, N, Inagaki, E, Noma, M, Miyano, M.
登録日1993-09-21
公開日1994-01-31
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献X-ray structure of a pokeweed antiviral protein, coded by a new genomic clone, at 0.23 nm resolution. A model structure provides a suitable electrostatic field for substrate binding.
Eur.J.Biochem., 225, 1994
3PCV
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Crystal structure analysis of human leukotriene C4 synthase at 1.9 angstrom resolution
分子名称: 1,2-ETHANEDIOL, DODECYL-BETA-D-MALTOSIDE, GLUTATHIONE, ...
著者Saino, H, Ago, H, Miyano, M.
登録日2010-10-22
公開日2011-03-16
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献The catalytic architecture of leukotriene C4 synthase with two arginine residues
J.Biol.Chem., 286, 2011
7VVI
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OXA-58 crystal structure of acylated meropenem complex
分子名称: (4R,5S)-3-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-4-methyl-4,5-d ihydro-1H-pyrrole-2-carboxylic acid, Beta-lactamase, SULFATE ION
著者Saino, H, Sugiyabu, T, Miyano, M.
登録日2021-11-06
公開日2022-11-23
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献OXA-58 crystal structure of acylated meropenem complex
to be published
7VX3
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OXA-58 crystal structure of acylated meropenem complex 2
分子名称: (2S,3R,4S)-4-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-2-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-3-methyl-3,4-dihydro-2H-pyrrole-5-carboxylic acid, (4R,5S)-3-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-4-methyl-4,5-d ihydro-1H-pyrrole-2-carboxylic acid, Beta-lactamase, ...
著者Saino, H, Sugiyabu, T, Miyano, M.
登録日2021-11-12
公開日2022-11-23
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献OXA-58 crystal structure of acylated meropenem complex 2
To be published
7VX6
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OXA-58 crystal structure of acylated meropenem complex 2
分子名称: (2S,3R,4S)-4-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-2-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-3-methyl-3,4-dihydro-2H-pyrrole-5-carboxylic acid, (4R,5S)-3-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-5-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-4-methyl-4,5-d ihydro-1H-pyrrole-2-carboxylic acid, Beta-lactamase, ...
著者Saino, H, Sugiyabu, T, Miyano, M.
登録日2021-11-12
公開日2022-11-23
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献OXA-58 crystal structure of acylated meropenem complex 2
To be published
2PNO
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Crystal structure of human leukotriene C4 synthase
分子名称: DODECYL-BETA-D-MALTOSIDE, GLUTATHIONE, Leukotriene C4 synthase
著者Ago, H, Kanaoka, Y, Irikura, D, Lam, B.K, Shimamura, T, Austen, K.F, Miyano, M.
登録日2007-04-24
公開日2007-08-07
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3.3 Å)
主引用文献Crystal structure of a human membrane protein involved in cysteinyl leukotriene biosynthesis
Nature, 448, 2007
1F88
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CRYSTAL STRUCTURE OF BOVINE RHODOPSIN
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, MERCURY (II) ION, RETINAL, ...
著者Okada, T, Palczewski, K, Stenkamp, R.E, Miyano, M.
登録日2000-06-29
公開日2000-08-04
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal structure of rhodopsin: A G protein-coupled receptor.
Science, 289, 2000
1HAK
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CRYSTAL STRUCTURE OF RECOMBINANT HUMAN PLACENTAL ANNEXIN V COMPLEXED WITH K-201 AS A CALCIUM CHANNEL ACTIVITY INHIBITOR
分子名称: 4-[3-{1-(4-BENZYL)PIPERODINYL}PROPIONYL]-7-METHOXY-2,3,4,5-TERTRAHYDRO-1,4-BENZOTHIAZEPINE, ANNEXIN V
著者Ago, H, Inagaki, E, Miyano, M.
登録日1997-12-10
公開日1999-02-16
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Crystal structure of annexin V with its ligand K-201 as a calcium channel activity inhibitor.
J.Mol.Biol., 274, 1997
5B6F
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Crystal structure of the Fab fragment of an anti-Leukotriene C4 monoclonal antibody complexed with LTC4
分子名称: (5~{S},6~{R},7~{E},9~{E},11~{Z},14~{Z})-6-[(2~{R})-2-[[(4~{S})-4-azanyl-5-oxidanyl-5-oxidanylidene-pentanoyl]amino]-3-(2-hydroxy-2-oxoethylamino)-3-oxidanylidene-propyl]sulfanyl-5-oxidanyl-icosa-7,9,11,14-tetraenoic acid, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, SULFATE ION, ...
著者Sugahara, M, Ago, H, Saino, H, Miyano, M.
登録日2016-05-27
公開日2017-05-31
最終更新日2019-07-24
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Crystal structure of the Fab fragment of an anti-Leukotriene C4 monoclonal antibody complexed with LTC4
To Be Published
3WHX
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Crystal structure of anti-prostaglandin E2 Fab fragment PGE1 complex
分子名称: 7-[(1R,3R)-3-hydroxy-2-[(1E,3S)-3-hydroxyoct-1-en-1-yl]-5-oxocyclopentyl]heptanoic acid, mAb Fab H fragment, mAb Fab L fragment
著者Sugahara, M, Ago, H, Saino, H, Miyano, M.
登録日2013-09-03
公開日2014-09-10
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structure of anti-Prostaglandin E2 Fab fragment with Prostaglandin E2
To be Published
3WE6
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Crystal structure of anti-Prostaglandin E2 Fab fragment
分子名称: ISOPROPYL ALCOHOL, mAb Fab H fragment, mAb Fab L fragment
著者Sugahara, M, Ago, H, Saino, H, Miyano, M.
登録日2013-07-01
公開日2014-07-02
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (2.02 Å)
主引用文献Crystal structure of anti-Prostaglandin E2 Fab fragment with Prostaglandin E2
To be Published
3WFH
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Crystal structure of anti-Prostaglandin E2 Fab fragment PGE2 complex
分子名称: (Z)-7-[(1R,2R,3R)-3-hydroxy-2-[(E,3S)-3-hydroxyoct-1-enyl]-5-oxo-cyclopentyl]hept-5-enoic acid, mAb Fab H fragment, mAb Fab L fragment
著者Sugahara, M, Ago, H, Saino, H, Miyano, M.
登録日2013-07-19
公開日2014-07-23
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of anti-Prostaglandin E2 Fab fragment with Prostaglandin E2
To be Published
3WIF
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Crystal structure of anti-prostaglandin E2 Fab fragment 9Cl-PGF2beta complex
分子名称: (Z)-7-[(1R,2R,3R,5R)-5-chloranyl-3-oxidanyl-2-[(E,3S)-3-oxidanyloct-1-enyl]cyclopentyl]hept-5-enoic acid, mAb Fab H fragment, mAb Fab L fragment
著者Sugahara, M, Ago, H, Saino, H, Miyano, M.
登録日2013-09-12
公開日2014-09-17
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structure of anti-Prostaglandin E2 Fab fragment with Prostaglandin E2
To be Published
5BOH
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Crystal Structure of OXA-58 with the Substrate-Binding Cleft in a Closed State
分子名称: Beta-lactamase, SULFATE ION
著者Saino, H, Sugiyabu, T, Miyano, M.
登録日2015-05-27
公開日2015-12-30
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal Structure of OXA-58 with the Substrate-Binding Cleft in a Closed State: Insights into the Mobility and Stability of the OXA-58 Structure
Plos One, 10, 2015
1WLV
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Crystal structure of TT0310 protein from Thermus thermophilus HB8
分子名称: ACETATE ION, CHLORIDE ION, COENZYME A, ...
著者Kunishima, N, Sugahara, M, Miyano, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-06-29
公開日2005-07-05
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献A Novel Induced-fit Reaction Mechanism of Asymmetric Hot Dog Thioesterase PaaI
J.Mol.Biol., 352, 2005
1WM6
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Crystal structure of TT0310 protein from Thermus thermophilus HB8
分子名称: CHLORIDE ION, phenylacetic acid degradation protein PaaI
著者Sugahara, M, Kunishima, N, Miyano, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-07-04
公開日2005-07-05
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献A Novel Induced-fit Reaction Mechanism of Asymmetric Hot Dog Thioesterase PaaI
J.Mol.Biol., 352, 2005
1WLU
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Crystal structure of TT0310 protein from Thermus thermophilus HB8
分子名称: CHLORIDE ION, GLYCEROL, phenylacetic acid degradation protein PaaI
著者Kunishima, N, Sugahara, M, Miyano, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-06-29
公開日2005-07-05
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献A Novel Induced-fit Reaction Mechanism of Asymmetric Hot Dog Thioesterase PaaI
J.Mol.Biol., 352, 2005
1WN3
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Crystal structure of TT0310 protein from Thermus thermophilus HB8
分子名称: ACETATE ION, CHLORIDE ION, HEXANOYL-COENZYME A, ...
著者Kunishima, N, Sugahara, M, Miyano, M, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2004-07-27
公開日2005-07-05
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献A Novel Induced-fit Reaction Mechanism of Asymmetric Hot Dog Thioesterase PaaI
J.Mol.Biol., 352, 2005
2CZU
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lipocalin-type prostaglandin D synthase
分子名称: Prostaglandin-H2 D-isomerase
著者Kumasaka, T, Irikura, D, Ago, H, Aritake, K, Yamamoto, M, Inoue, T, Miyano, M, Urade, Y, Hayaishi, O, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-07-17
公開日2006-10-03
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural basis of the catalytic mechanism operating in open-closed conformers of lipocalin type prostaglandin D synthase.
J.Biol.Chem., 284, 2009
2CZT
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lipocalin-type prostaglandin D synthase
分子名称: Prostaglandin-H2 D-isomerase
著者Kumasaka, T, Irikura, D, Ago, H, Aritake, K, Yamamoto, M, Inoue, T, Miyano, M, Urade, Y, Hayaishi, O, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-07-17
公開日2006-10-03
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Structural basis of the catalytic mechanism operating in open-closed conformers of lipocalin type prostaglandin D synthase.
J.Biol.Chem., 284, 2009

 

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