1IWL
| Crystal Structure of the Lipoprotein Localization Factor, LolA | Descriptor: | MAGNESIUM ION, Outer-membrane lipoproteins carrier protein, ZINC ION | Authors: | Takeda, K, Miyatake, H, Yokota, N, Matsuyama, S, Tokuda, H, Miki, K. | Deposit date: | 2002-05-17 | Release date: | 2003-07-15 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.65 Å) | Cite: | Crystal structures of bacterial lipoprotein localization factors, LolA and LolB Embo J., 22, 2003
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1IU9
| Crystal structure of the C-terminal domain of aspartate racemase from Pyrococcus horikoshii OT3 | Descriptor: | CALCIUM ION, aspartate racemase | Authors: | Liu, L, Iwata, K, Yohda, M, Miki, K. | Deposit date: | 2002-02-28 | Release date: | 2003-09-09 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (2.04 Å) | Cite: | Structural insight into gene duplication, gene fusion and domain swapping in the evolution of PLP-independent amino acid racemases FEBS LETT., 528, 2002
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1IWN
| Crystal Structure of the Outer Membrane Lipoprotein Receptor LolB Complexed with PEGMME2000 | Descriptor: | 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE, Outer Membrane Lipoprotein LolB, SULFATE ION | Authors: | Takeda, K, Miyatake, H, Yokota, N, Matsuyama, S, Tokuda, H, Miki, K. | Deposit date: | 2002-05-17 | Release date: | 2003-07-15 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Crystal structures of bacterial lipoprotein localization factors, LolA and LolB. Embo J., 22, 2003
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1IUB
| Fucose-specific lectin from Aleuria aurantia (Hg-derivative form) | Descriptor: | CHLORIDE ION, Fucose-specific lectin, MERCURY (II) ION, ... | Authors: | Fujihashi, M, Peapus, D.H, Kamiya, N, Nagata, Y, Miki, K, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2002-03-01 | Release date: | 2003-09-30 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2.31 Å) | Cite: | Crystal Structure of Fucose-Specific Lectin from Aleuria aurantia Binding Ligands at Three of Its Five Sugar Recognition Sites Biochemistry, 42, 2003
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1OWM
| DATA1:DNA photolyase / received X-rays dose 1.2 exp15 photons/mm2 | Descriptor: | Deoxyribodipyrimidine photolyase, FLAVIN-ADENINE DINUCLEOTIDE, PHOSPHATE ION | Authors: | Komori, H, Adachi, S, Miki, K, Eker, A, Kort, R. | Deposit date: | 2003-03-28 | Release date: | 2004-04-13 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | DNA apophotolyase from Anacystis nidulans: 1.8 A structure, 8-HDF reconstitution and X-ray-induced FAD reduction. Acta Crystallogr.,Sect.D, 60, 2004
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1OWN
| DATA3:DNA photolyase / received X-rays dose 4.8 exp15 photons/mm2 | Descriptor: | Deoxyribodipyrimidine photolyase, FLAVIN-ADENINE DINUCLEOTIDE, PHOSPHATE ION | Authors: | Komori, H, Adachi, S, Miki, K, Eker, A, Kort, R. | Deposit date: | 2003-03-28 | Release date: | 2004-04-13 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | DNA apophotolyase from Anacystis nidulans: 1.8 A structure, 8-HDF reconstitution and X-ray-induced FAD reduction. Acta Crystallogr.,Sect.D, 60, 2004
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1OWO
| DATA4:photoreduced DNA photolyase / received X-rays dose 1.2 exp15 photons/mm2 | Descriptor: | Deoxyribodipyrimidine photolyase, FLAVIN-ADENINE DINUCLEOTIDE, PHOSPHATE ION | Authors: | Komori, H, Adachi, S, Miki, K, Eker, A, Kort, R. | Deposit date: | 2003-03-28 | Release date: | 2004-04-13 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | DNA apophotolyase from Anacystis nidulans: 1.8 A structure, 8-HDF reconstitution and X-ray-induced FAD reduction. Acta Crystallogr.,Sect.D, 60, 2004
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5AYV
| Crystal structure of archaeal ketopantoate reductase complexed with coenzyme A and 2-oxopantoate | Descriptor: | (4S)-2-METHYL-2,4-PENTANEDIOL, 2-dehydropantoate 2-reductase, ACETATE ION, ... | Authors: | Aikawa, Y, Nishitani, Y, Miki, K. | Deposit date: | 2015-09-08 | Release date: | 2016-01-27 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (1.647 Å) | Cite: | Crystal structure of archaeal ketopantoate reductase complexed with coenzyme a and 2-oxopantoate provides structural insights into feedback regulation Proteins, 84, 2016
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1OWL
| Structure of apophotolyase from Anacystis nidulans | Descriptor: | Deoxyribodipyrimidine photolyase, FLAVIN-ADENINE DINUCLEOTIDE, PHOSPHATE ION | Authors: | Komori, H, Adachi, S, Miki, K, Eker, A, Kort, R. | Deposit date: | 2003-03-28 | Release date: | 2004-04-13 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | DNA apophotolyase from Anacystis nidulans: 1.8 A structure, 8-HDF reconstitution and X-ray-induced FAD reduction. Acta Crystallogr.,Sect.D, 60, 2004
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1OWP
| DATA6:photoreduced DNA pholyase / received X-rays dose 4.8 exp15 photons/mm2 | Descriptor: | Deoxyribodipyrimidine photolyase, FLAVIN-ADENINE DINUCLEOTIDE, PHOSPHATE ION | Authors: | Komori, H, Adachi, S, Miki, K, Eker, A, Kort, R. | Deposit date: | 2003-03-28 | Release date: | 2004-04-13 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | DNA apophotolyase from Anacystis nidulans: 1.8 A structure, 8-HDF reconstitution and X-ray-induced FAD reduction. Acta Crystallogr.,Sect.D, 60, 2004
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1PRC
| CRYSTALLOGRAPHIC REFINEMENT AT 2.3 ANGSTROMS RESOLUTION AND REFINED MODEL OF THE PHOTOSYNTHETIC REACTION CENTER FROM RHODOPSEUDOMONAS VIRIDIS | Descriptor: | 15-trans-1,2-dihydroneurosporene, BACTERIOCHLOROPHYLL B, BACTERIOPHEOPHYTIN B, ... | Authors: | Deisenhofer, J, Epp, O, Miki, K, Huber, R, Michel, H. | Deposit date: | 1988-02-04 | Release date: | 1989-01-09 | Last modified: | 2021-03-10 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Crystallographic refinement at 2.3 A resolution and refined model of the photosynthetic reaction centre from Rhodopseudomonas viridis. J.Mol.Biol., 246, 1995
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5ZIN
| Crystal structure of bacteriorhodopsin at 1.27 A resolution | Descriptor: | 2,3-DI-PHYTANYL-GLYCEROL, Bacteriorhodopsin, RETINAL | Authors: | Hasegawa, N, Jonotsuka, H, Miki, K, Takeda, K. | Deposit date: | 2018-03-16 | Release date: | 2018-10-10 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.27 Å) | Cite: | X-ray structure analysis of bacteriorhodopsin at 1.3 angstrom resolution. Sci Rep, 8, 2018
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5ZIL
| Crystal structure of bacteriorhodopsin at 1.29 A resolution | Descriptor: | 2,3-DI-PHYTANYL-GLYCEROL, Bacteriorhodopsin, RETINAL | Authors: | Hasegawa, N, Jonotsuka, H, Miki, K, Takeda, K. | Deposit date: | 2018-03-16 | Release date: | 2018-10-10 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.29 Å) | Cite: | X-ray structure analysis of bacteriorhodopsin at 1.3 angstrom resolution. Sci Rep, 8, 2018
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5ZIM
| Crystal structure of bacteriorhodopsin at 1.25 A resolution | Descriptor: | 2,3-DI-PHYTANYL-GLYCEROL, Bacteriorhodopsin, RETINAL | Authors: | Hasegawa, N, Jonotsuka, H, Miki, K, Takeda, K. | Deposit date: | 2018-03-16 | Release date: | 2018-10-10 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.25 Å) | Cite: | X-ray structure analysis of bacteriorhodopsin at 1.3 angstrom resolution. Sci Rep, 8, 2018
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5WQR
| High resolution structure of high-potential iron-sulfur protein in the reduced state | Descriptor: | GLYCEROL, High-potential iron-sulfur protein, IRON/SULFUR CLUSTER, ... | Authors: | Ohno, H, Takeda, K, Niwa, S, Tsujinaka, T, Hanazono, Y, Hirano, Y, Miki, K. | Deposit date: | 2016-11-28 | Release date: | 2017-06-07 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (0.8 Å) | Cite: | Crystallographic characterization of the high-potential iron-sulfur protein in the oxidized state at 0.8 angstrom resolution PLoS ONE, 12, 2017
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5ZCA
| Crystal structure of lambda repressor (1-20) fused with maltose-binding protein | Descriptor: | CITRIC ACID, Repressor protein cI,Maltose-binding periplasmic protein, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose | Authors: | Hanazono, Y, Takeda, K, Miki, K. | Deposit date: | 2018-02-16 | Release date: | 2018-08-15 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.801 Å) | Cite: | Co-translational folding of alpha-helical proteins: structural studies of intermediate-length variants of the lambda repressor Febs Open Bio, 8, 2018
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5WQQ
| High resolution structure of high-potential iron-sulfur protein in the oxidized state | Descriptor: | GLYCEROL, High-potential iron-sulfur protein, IRON/SULFUR CLUSTER, ... | Authors: | Ohno, H, Takeda, K, Niwa, S, Tsujinaka, T, Hanazono, Y, Hirano, Y, Miki, K. | Deposit date: | 2016-11-28 | Release date: | 2017-06-07 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (0.8 Å) | Cite: | Crystallographic characterization of the high-potential iron-sulfur protein in the oxidized state at 0.8 angstrom resolution PLoS ONE, 12, 2017
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5YO8
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1QSW
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1REP
| CRYSTAL STRUCTURE OF REPLICATION INITIATOR PROTEIN REPE54 OF MINI-F PLASMID COMPLEXED WITH AN ITERON DNA | Descriptor: | DNA (5'-D(*CP*CP*TP*GP*TP*GP*AP*CP*AP*AP*AP*TP*TP*GP*CP*CP*CP*TP*CP*AP*GP*T)-3'), DNA (5'-D(*CP*TP*GP*AP*GP*GP*GP*CP*AP*AP*TP*TP*TP*GP*TP*CP*AP*CP*AP*GP*GP*T)-3'), MAGNESIUM ION, ... | Authors: | Komori, H, Matsunaga, F, Higuchi, Y, Ishiai, M, Wada, C, Miki, K. | Deposit date: | 1999-04-29 | Release date: | 2000-02-09 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | Crystal structure of a prokaryotic replication initiator protein bound to DNA at 2.6 A resolution. EMBO J., 18, 1999
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1UD3
| Crystal structure of AmyK38 N289H mutant | Descriptor: | SODIUM ION, amylase | Authors: | Nonaka, T, Fujihashi, M, Kita, A, Hagihara, H, Ozaki, K, Ito, S, Miki, K. | Deposit date: | 2003-04-28 | Release date: | 2003-07-22 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (2.15 Å) | Cite: | Crystal structure of calcium-free alpha-amylase from Bacillus sp. strain KSM-K38 (AmyK38) and its sodium ion binding sites J.Biol.Chem., 278, 2003
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1UD5
| Crystal structure of AmyK38 with rubidium ion | Descriptor: | RUBIDIUM ION, SODIUM ION, amylase | Authors: | Nonaka, T, Fujihashi, M, Kita, A, Hagihara, H, Ozaki, K, Ito, S, Miki, K. | Deposit date: | 2003-04-28 | Release date: | 2003-07-22 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (2.7 Å) | Cite: | Crystal structure of calcium-free alpha-amylase from Bacillus sp. strain KSM-K38 (AmyK38) and its sodium ion binding sites J.Biol.Chem., 278, 2003
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1UD8
| Crystal structure of AmyK38 with lithium ion | Descriptor: | SODIUM ION, amylase | Authors: | Nonaka, T, Fujihashi, M, Kita, A, Hagihara, H, Ozaki, K, Ito, S, Miki, K. | Deposit date: | 2003-04-28 | Release date: | 2003-07-22 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (2.88 Å) | Cite: | Crystal structure of calcium-free alpha-amylase from Bacillus sp. strain KSM-K38 (AmyK38) and its sodium ion binding sites J.Biol.Chem., 278, 2003
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1UA8
| Crystal structure of the lipoprotein localization factor, LolA | Descriptor: | Outer-membrane lipoproteins carrier protein | Authors: | Takeda, K, Miyatake, H, Yokota, N, Matsuyama, S, Tokuda, H, Miki, K. | Deposit date: | 2003-03-04 | Release date: | 2003-07-15 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Crystal structures of bacterial lipoprotein localization factors, LolA and LolB. Embo J., 22, 2003
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1UD4
| Crystal structure of calcium free alpha amylase from Bacillus sp. strain KSM-K38 (AmyK38, in calcium containing solution) | Descriptor: | SODIUM ION, amylase | Authors: | Nonaka, T, Fujihashi, M, Kita, A, Hagihara, H, Ozaki, K, Ito, S, Miki, K. | Deposit date: | 2003-04-28 | Release date: | 2003-07-22 | Last modified: | 2024-04-03 | Method: | X-RAY DIFFRACTION (2.15 Å) | Cite: | Crystal structure of calcium-free alpha-amylase from Bacillus sp. strain KSM-K38 (AmyK38) and its sodium ion binding sites J.Biol.Chem., 278, 2003
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