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PDB: 281 件
1QNF
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STRUCTURE OF PHOTOLYASE
分子名称: 8-HYDROXY-10-(D-RIBO-2,3,4,5-TETRAHYDROXYPENTYL)-5-DEAZAISOALLOXAZINE, FLAVIN-ADENINE DINUCLEOTIDE, PHOTOLYASE
著者Miki, K, Kitadokoro, K.
登録日1997-07-04
公開日1998-01-14
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of DNA photolyase from Anacystis nidulans
Nat.Struct.Biol., 4, 1997
1CO6
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CRYSTAL STRUCTURE OF FERROCYTOCHROME C2 FROM RHODOPSEUDOMONAS VIRIDIS
分子名称: HEME C, PROTEIN (CYTOCHROME C2)
著者Miki, K, Sogabe, S.
登録日1999-06-05
公開日1999-06-18
最終更新日2023-08-09
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Refined crystal structure of ferrocytochrome c2 from Rhodopseudomonas viridis at 1.6 A resolution.
J.Mol.Biol., 252, 1995
1CRY
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APPLICATION OF AN AUTOMATIC MOLECULAR REPLACEMENT PROCEDURE TO CRYSTAL STRUCTURE OF CYTOCHROME C2 FROM RHODOPSEUDOMONAS VIRIDIS
分子名称: CYTOCHROME C2, HEME C
著者Miki, K, Sogabe, S.
登録日1993-12-27
公開日1994-04-30
最終更新日2024-10-09
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Application of an automatic molecular-replacement procedure to crystal structure analysis of cytochrome c2 from Rhodopseudomonas viridis.
Acta Crystallogr.,Sect.D, 50, 1994
1IO3
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CRYSTAL STRUCTURE OF FERRICYTOCHROME C2 FROM RHODOPSEUDOMONAS VIRIDIS
分子名称: CYTOCHROME C2, HEME C
著者Miki, K, Sogabe, S.
登録日2001-01-06
公開日2001-04-18
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal structure of the oxidized cytochrome c(2) from Blastochloris viridis.
FEBS Lett., 491, 2001
2YQC
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Crystal Structure of uridine-diphospho-N-acetylglucosamine pyrophosphorylase from Candida albicans, in the apo-like form
分子名称: GLYCEROL, MAGNESIUM ION, UDP-N-acetylglucosamine pyrophosphorylase
著者Miki, K, Maruyama, D, Nishitani, Y, Nonaka, T, Kita, A.
登録日2007-03-30
公開日2007-05-22
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal Structure of Uridine-diphospho-N-acetylglucosamine Pyrophosphorylase from Candida albicans and Catalytic Reaction Mechanism
J.Biol.Chem., 282, 2007
2YQJ
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Crystal Structure of uridine-diphospho-N-acetylglucosamine pyrophosphorylase from Candida albicans, in the reaction-completed form
分子名称: GLYCEROL, MAGNESIUM ION, SULFATE ION, ...
著者Miki, K, Maruyama, D, Nishitani, Y, Nonaka, T, Kita, A.
登録日2007-03-30
公開日2007-05-22
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.31 Å)
主引用文献Crystal Structure of Uridine-diphospho-N-acetylglucosamine Pyrophosphorylase from Candida albicans and Catalytic Reaction Mechanism
J.Biol.Chem., 282, 2007
2YQH
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Crystal structure of uridine-diphospho-N-acetylglucosamine pyrophosphorylase from Candida albicans, in the substrate-binding form
分子名称: 2-acetamido-2-deoxy-1-O-phosphono-alpha-D-glucopyranose, GLYCEROL, MAGNESIUM ION, ...
著者Miki, K, Maruyama, D, Nishitani, Y, Nonaka, T, Kita, A.
登録日2007-03-30
公開日2007-05-22
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal Structure of Uridine-diphospho-N-acetylglucosamine Pyrophosphorylase from Candida albicans and Catalytic Reaction Mechanism
J.Biol.Chem., 282, 2007
2YQS
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Crystal structure of uridine-diphospho-N-acetylglucosamine pyrophosphorylase from Candida albicans, in the product-binding form
分子名称: GLYCEROL, MAGNESIUM ION, SULFATE ION, ...
著者Miki, K, Maruyama, D, Nishitani, Y, Nonaka, T, Kita, A.
登録日2007-03-30
公開日2007-05-22
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal Structure of Uridine-diphospho-N-acetylglucosamine Pyrophosphorylase from Candida albicans and Catalytic Reaction Mechanism
J.Biol.Chem., 282, 2007
4V8K
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Crystal structure of the LH1-RC complex from Thermochromatium tepidum in P21 form
分子名称: BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, CALCIUM ION, ...
著者Niwa, S, Takeda, K, Wang-Otomo, Z.-Y, Miki, K.
登録日2013-11-22
公開日2014-07-09
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (3.006 Å)
主引用文献Structure of the LH1-RC complex from Thermochromatium tepidum at 3.0 angstrom
Nature, 508, 2014
3KDO
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Crystal structure of Type III Rubisco SP6 mutant complexed with 2-CABP
分子名称: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, MAGNESIUM ION, Ribulose bisphosphate carboxylase
著者Nishitani, Y, Fujihashi, M, Doi, T, Yoshida, S, Atomi, H, Imanaka, T, Miki, K.
登録日2009-10-23
公開日2010-10-06
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.36 Å)
主引用文献Structure-based catalytic optimization of a type III Rubisco from a hyperthermophile
J.Biol.Chem., 285, 2010
3KDN
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Crystal structure of Type III Rubisco SP4 mutant complexed with 2-CABP
分子名称: 2-CARBOXYARABINITOL-1,5-DIPHOSPHATE, MAGNESIUM ION, Ribulose bisphosphate carboxylase
著者Nishitani, Y, Fujihashi, M, Doi, T, Yoshida, S, Atomi, H, Imanaka, T, Miki, K.
登録日2009-10-23
公開日2010-10-06
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.09 Å)
主引用文献Structure-based catalytic optimization of a type III Rubisco from a hyperthermophile
J.Biol.Chem., 285, 2010
6LOP
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Crystal Structure of Class IB terpene synthase bound with geranylgeraniol
分子名称: (2~{E},6~{E},10~{E})-3,7,11,15-tetramethylhexadeca-2,6,10,14-tetraen-1-ol, Tetraprenyl-beta-curcumene synthase
著者Fujihashi, M, Inagi, H, Miki, K.
登録日2020-01-07
公開日2020-11-18
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.91 Å)
主引用文献Characterization of Class IB Terpene Synthase: The First Crystal Structure Bound with a Substrate Surrogate.
Acs Chem.Biol., 15, 2020
6LOO
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Crystal Structure of Class IB terpene synthase bound with geranylcitronellyl diphosphate
分子名称: Tetraprenyl-beta-curcumene synthase, phosphono [(3~{R},6~{E},10~{E})-3,7,11,15-tetramethylhexadeca-6,10,14-trienyl] hydrogen phosphate, phosphono [(3~{S},6~{E},10~{E})-3,7,11,15-tetramethylhexadeca-6,10,14-trienyl] hydrogen phosphate
著者Fujihashi, M, Inagi, H, Miki, K.
登録日2020-01-07
公開日2020-11-18
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.99 Å)
主引用文献Characterization of Class IB Terpene Synthase: The First Crystal Structure Bound with a Substrate Surrogate.
Acs Chem.Biol., 15, 2020
1QSW
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CRYSTAL STRUCTURE ANALYSIS OF A HUMAN LYSOZYME MUTANT W64C C65A
分子名称: HUMAN LYSOZYME MUTANT
著者Inaka, K, Kanaya, E, Kikuchi, M, Miki, K.
登録日1999-06-24
公開日2001-08-08
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Crystal structure of a mutant human lysozyme with a substituted disulfide bond.
Proteins, 43, 2001
2B3R
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Crystal structure of the C2 domain of class II phosphatidylinositide 3-kinase C2
分子名称: Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing alpha polypeptide, SULFATE ION
著者Liu, L, Song, X, He, D, Komma, C, Kita, A, Verbasius, J.V, Bellamy, H, Miki, K, Czech, M.P, Zhou, G.W.
登録日2005-09-20
公開日2005-12-13
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of the C2 domain of class II phosphatidylinositide 3-kinase C2alpha.
J.Biol.Chem., 281, 2006
3HRX
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Crystal structure of phenylacetic acid degradation protein PaaG
分子名称: Probable enoyl-CoA hydratase
著者Kichise, T, Hisano, T, Takeda, K, Miki, K.
登録日2009-06-10
公開日2009-06-23
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Crystal structure of phenylacetic acid degradation protein PaaG from Thermus thermophilus HB8
Proteins, 76, 2009
7Y3J
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24B3 antibody-peptide complex
分子名称: 24B3 Heavy chain, 24B3 Light chain, ALA-LEU-VAL-PHE-PHE-ALA-PRO-ALA-VAL-GLY-SER
著者Irie, K, Irie, Y, Kita, A, Miki, K.
登録日2022-06-11
公開日2022-08-17
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structural basis of the 24B3 antibody against the toxic conformer of amyloid beta with a turn at positions 22 and 23.
Biochem.Biophys.Res.Commun., 621, 2022
3FF5
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Crystal structure of the conserved N-terminal domain of the peroxisomal matrix-protein-import receptor, Pex14p
分子名称: Peroxisomal biogenesis factor 14, decyl 2-trimethylazaniumylethyl phosphate
著者Su, J.-R, Takeda, K, Tamura, S, Fujiki, Y, Miki, K.
登録日2008-12-01
公開日2008-12-30
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of the conserved N-terminal domain of the peroxisomal matrix protein import receptor, Pex14p
Proc.Natl.Acad.Sci.USA, 106, 2009
7BXV
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11A1 antibody-peptide complex
分子名称: 1,2-ETHANEDIOL, Fab of the 11A1 antibody H chain, Fab of the 11A1 antibody L chain, ...
著者Irie, K, Irie, Y, Kita, A, Miki, K.
登録日2020-04-21
公開日2021-04-21
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献APOE epsilon 4 allele advances the age-dependent decline of amyloid beta clearance in the human cortex.
Biorxiv, 2022
5WQR
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High resolution structure of high-potential iron-sulfur protein in the reduced state
分子名称: GLYCEROL, High-potential iron-sulfur protein, IRON/SULFUR CLUSTER, ...
著者Ohno, H, Takeda, K, Niwa, S, Tsujinaka, T, Hanazono, Y, Hirano, Y, Miki, K.
登録日2016-11-28
公開日2017-06-07
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (0.8 Å)
主引用文献Crystallographic characterization of the high-potential iron-sulfur protein in the oxidized state at 0.8 angstrom resolution
PLoS ONE, 12, 2017
5WQQ
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High resolution structure of high-potential iron-sulfur protein in the oxidized state
分子名称: GLYCEROL, High-potential iron-sulfur protein, IRON/SULFUR CLUSTER, ...
著者Ohno, H, Takeda, K, Niwa, S, Tsujinaka, T, Hanazono, Y, Hirano, Y, Miki, K.
登録日2016-11-28
公開日2017-06-07
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (0.8 Å)
主引用文献Crystallographic characterization of the high-potential iron-sulfur protein in the oxidized state at 0.8 angstrom resolution
PLoS ONE, 12, 2017
8H8Q
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Fab-amyloid beta fragment complex at neutral pH
分子名称: CHLORIDE ION, Fab, GLN-LYS-CYS-VAL-PHE-PHE-ALA-GLU-ASP-VAL-GLY-SER-ASN-CYS-GLY, ...
著者Kita, A, Irie, K, Irie, Y, Matsushima, Y, Miki, K.
登録日2022-10-24
公開日2023-10-25
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Fab-amyloid beta fragment complex at neutral pH
To Be Published
4XF6
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myo-inositol 3-kinase bound with its products (ADP and 1D-myo-inositol 3-phosphate)
分子名称: 1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE, 1,2-ETHANEDIOL, ADENOSINE-5'-DIPHOSPHATE, ...
著者Nagata, R, Fujihashi, M, Miki, K.
登録日2014-12-26
公開日2015-06-03
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.08 Å)
主引用文献Crystal Structure and Product Analysis of an Archaeal myo-Inositol Kinase Reveal Substrate Recognition Mode and 3-OH Phosphorylation
Biochemistry, 54, 2015
4XF7
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myo-inositol 3-kinase bound with its substrates (AMPPCP and myo-inositol)
分子名称: 1,2,3,4,5,6-HEXAHYDROXY-CYCLOHEXANE, Carbohydrate/pyrimidine kinase, PfkB family, ...
著者Nagata, R, Fujihashi, M, Miki, K.
登録日2014-12-26
公開日2015-06-03
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.93 Å)
主引用文献Crystal Structure and Product Analysis of an Archaeal myo-Inositol Kinase Reveal Substrate Recognition Mode and 3-OH Phosphorylation
Biochemistry, 54, 2015
8JVC
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Crystal structure of dephospho-coenzyme A kinase
分子名称: GTP-dependent dephospho-CoA kinase
著者Kita, A, Ishida, Y, Shimosaka, T, Michimori, Y, Makarova, K, Koonin, E, Atomi, H, Miki, K.
登録日2023-06-28
公開日2024-06-19
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Crystal structure of GTP-dependent dephospho-coenzyme A kinase from the hyperthermophilic archaeon, Thermococcus kodakarensis.
Proteins, 92, 2024

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