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PDB: 322 件
3SMH
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Crystal structure of major peanut allergen Ara h 1
分子名称: Allergen Ara h 1, clone P41B
著者Cabanos, C.S, Mikami, B, Maruyama, N.
登録日2011-06-28
公開日2012-02-15
最終更新日2014-11-12
実験手法X-RAY DIFFRACTION (2.433 Å)
主引用文献Crystal structure of the major peanut allergen Ara h 1.
Mol.Immunol., 49, 2011
8JZ8
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BU of 8jz8 by Molmil
Subatomic structure of orthorhombic thaumatin at 0.89 Angstroms
分子名称: DI(HYDROXYETHYL)ETHER, Thaumatin I
著者Masuda, T, Suzuki, M, Yamasaki, M, Mikami, B.
登録日2023-07-04
公開日2024-05-15
実験手法X-RAY DIFFRACTION (0.89 Å)
主引用文献Subatomic structure of orthorhombic thaumatin at 0.89 angstrom reveals that highly flexible conformations are crucial for thaumatin sweetness.
Biochem.Biophys.Res.Commun., 703, 2024
3IM0
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BU of 3im0 by Molmil
Crystal structure of Chlorella virus vAL-1 soaked in 200mM D-glucuronic acid, 10% PEG-3350, and 200mM glycine-NaOH (pH 10.0)
分子名称: VAL-1, beta-D-glucopyranuronic acid
著者Ogura, K, Yamasaki, M, Hashidume, T, Yamada, T, Mikami, B, Hashimoto, W, Murata, K.
登録日2009-08-08
公開日2009-10-20
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.66 Å)
主引用文献Crystal structure of family 14 polysaccharide lyase with pH-dependent modes of action
J.Biol.Chem., 284, 2009
3KGL
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Crystal structure of procruciferin, 11S globulin from Brassica napus
分子名称: Cruciferin, GLYCEROL, SULFATE ION
著者Tandang-Silvas, M.R, Mikami, B, Maruyama, N, Utsumi, S.
登録日2009-10-29
公開日2010-04-21
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.981 Å)
主引用文献Conservation and divergence on plant seed 11S globulins based on crystal structures.
Biochim.Biophys.Acta, 1804, 2010
3QAC
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BU of 3qac by Molmil
Structure of amaranth 11S proglobulin seed storage protein from Amaranthus hypochondriacus L.
分子名称: 11S globulin seed storage protein
著者Tandang-Silvas, M.R, Carrazco-Pena, L, Barba de la Rosa, A.P, Osuna-Castro, J.A, Utsumi, S, Mikami, B, Maruyama, N.
登録日2011-01-10
公開日2012-01-11
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.275 Å)
主引用文献Structure of amaranth 11S proglobulin, a major seed storage protein from Amaranthus hypochondriacus L.
To be Published
7EDB
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BU of 7edb by Molmil
EcoT38I restriction endonuclease complexed with DNA
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, CHLORIDE ION, ...
著者Kita, K, Mikami, B.
登録日2021-03-15
公開日2022-03-16
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.39 Å)
主引用文献Structural analysis of EcoT38I restriction endonuclease
To Be Published
3FKR
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BU of 3fkr by Molmil
Structure of L-2-keto-3-deoxyarabonate dehydratase complex with pyruvate
分子名称: L-2-keto-3-deoxyarabonate dehydratase, PHOSPHATE ION, SODIUM ION
著者Shimada, N, Mikami, B.
登録日2008-12-17
公開日2010-02-02
最終更新日2017-11-01
実験手法X-RAY DIFFRACTION (1.801 Å)
主引用文献Structural analysis of L -2-keto-3-deoxyarabonate dehydratase an enzyme involved in an alternative bacterial pathway of L-arabinose metabolism in complex with pyruvate
To be Published
3GNE
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BU of 3gne by Molmil
Crystal structure of alginate lyase vAL-1 from Chlorella virus
分子名称: CITRATE ANION, GLYCEROL, VAL-1
著者Ogura, K, Yamasaki, M, Hashidume, T, Yamada, T, Mikami, B, Hashimoto, W, Murata, K.
登録日2009-03-17
公開日2009-10-20
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.2 Å)
主引用文献Crystal structure of family 14 polysaccharide lyase with pH-dependent modes of action
J.Biol.Chem., 284, 2009
4H2P
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BU of 4h2p by Molmil
Tetrameric form of 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase (MHPCO)
分子名称: 1,2-ETHANEDIOL, 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase, BETA-MERCAPTOETHANOL, ...
著者Kobayashi, J, Yoshida, H, Mikami, B, Hayashi, H, Kamitori, S, Yagi, T.
登録日2012-09-13
公開日2013-09-18
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.981 Å)
主引用文献Crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase
To be Published
3E9I
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BU of 3e9i by Molmil
Lysyl-tRNA synthetase from Bacillus stearothermophilus complexed with L-Lysine hydroxamate-AMP
分子名称: 5'-O-{(R)-hydroxy[(L-lysylamino)oxy]phosphoryl}adenosine, Lysyl-tRNA synthetase, MAGNESIUM ION, ...
著者Sakurama, H, Takita, T, Mikami, B, Itoh, T, Yasukawa, K, Inouye, K.
登録日2008-08-22
公開日2009-07-14
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Two crystal structures of lysyl-tRNA synthetase from Bacillus stearothermophilus in complex with lysyladenylate-like compounds: insights into the irreversible formation of the enzyme-bound adenylate of L-lysine hydroxamate
J.Biochem., 145, 2009
1BFN
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BU of 1bfn by Molmil
BETA-AMYLASE/BETA-CYCLODEXTRIN COMPLEX
分子名称: BETA-AMYLASE, Cycloheptakis-(1-4)-(alpha-D-glucopyranose), SULFATE ION
著者Adachi, M, Mikami, B, Katsube, T, Utsumi, S.
登録日1998-05-22
公開日1998-10-28
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.07 Å)
主引用文献Crystal structure of recombinant soybean beta-amylase complexed with beta-cyclodextrin.
J.Biol.Chem., 273, 1998
3K3T
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BU of 3k3t by Molmil
E185A mutant of peptidoglycan hydrolase from Sphingomonas sp. A1
分子名称: Peptidoglycan hydrolase FlgJ, SULFATE ION
著者Maruyama, Y, Ochiai, A, Itoh, T, Mikami, B, Hashimoto, W, Murata, K.
登録日2009-10-04
公開日2010-07-14
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.75 Å)
主引用文献Mutational studies of the peptidoglycan hydrolase FlgJ of Sphingomonas sp. strain A1
J.Basic Microbiol., 50, 2010
3E9H
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BU of 3e9h by Molmil
Lysyl-tRNA synthetase from Bacillus stearothermophilus complexed with L-Lysylsulfamoyl adenosine
分子名称: 5'-O-[(L-LYSYLAMINO)SULFONYL]ADENOSINE, Lysyl-tRNA synthetase, MAGNESIUM ION
著者Sakurama, H, Takita, T, Mikami, B, Itoh, T, Yasukawa, K, Inouye, K.
登録日2008-08-22
公開日2009-07-14
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Two crystal structures of lysyl-tRNA synthetase from Bacillus stearothermophilus in complex with lysyladenylate-like compounds: insights into the irreversible formation of the enzyme-bound adenylate of L-lysine hydroxamate
J.Biochem., 145, 2009
3FGQ
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BU of 3fgq by Molmil
Crystal structure of native human neuroserpin
分子名称: GLYCEROL, Neuroserpin
著者Takehara, S, Yang, X, Mikami, B, Onda, M.
登録日2008-12-08
公開日2009-04-28
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.09 Å)
主引用文献The 2.1-A crystal structure of native neuroserpin reveals unique structural elements that contribute to conformational instability
J.Mol.Biol., 388, 2009
5GX8
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BU of 5gx8 by Molmil
Crystal structure of solute-binding protein related to glycosaminoglycans
分子名称: 1,2-ETHANEDIOL, CALCIUM ION, D(-)-TARTARIC ACID, ...
著者Oiki, S, Mikami, B, Murata, K, Hashimoto, W.
登録日2016-09-15
公開日2017-07-19
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.778 Å)
主引用文献A bacterial ABC transporter enables import of mammalian host glycosaminoglycans
Sci Rep, 7, 2017
3FKK
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BU of 3fkk by Molmil
Structure of L-2-keto-3-deoxyarabonate dehydratase
分子名称: L-2-keto-3-deoxyarabonate dehydratase, PHOSPHATE ION
著者Shimada, N, Mikami, B.
登録日2008-12-17
公開日2010-01-12
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Structural analysis of L -2-keto-3-deoxyarabonate dehydratase an enzyme involved in an alternative bacterial pathway of L-arabinose metabolism in complex with pyruvate
To be Published
7CPK
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BU of 7cpk by Molmil
Xylanase R from Bacillus sp. TAR-1
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, Endo-1,4-beta-xylanase A, ...
著者Kuwata, K, Suzuki, M, Takita, T, Nakatani, K, Li, T, Katano, Y, Kojima, K, Mizutani, K, Mikami, B, Yatsunami, R, Nakamura, S, Yasukawa, K.
登録日2020-08-07
公開日2020-09-02
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Insight into the mechanism of thermostabilization of GH10 xylanase from Bacillus sp. strain TAR-1 by the mutation of S92 to E.
Biosci.Biotechnol.Biochem., 85, 2021
7CPL
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BU of 7cpl by Molmil
Xylanase R from Bacillus sp. TAR-1
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, CALCIUM ION, Endo-1,4-beta-xylanase A, ...
著者Kuwata, K, Suzuki, M, Takita, T, Nakatani, K, Li, T, Katano, Y, Kojima, K, Mizutani, K, Mikami, B, Yatsunami, R, Nakamura, S, Yasukawa, K.
登録日2020-08-07
公開日2020-09-02
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.52 Å)
主引用文献Insight into the mechanism of thermostabilization of GH10 xylanase from Bacillus sp. strain TAR-1 by the mutation of S92 to E.
Biosci.Biotechnol.Biochem., 85, 2021
7C9J
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BU of 7c9j by Molmil
Transglutaminase from Geobacillus stearothermophilus (without C-terminal extension)
分子名称: 1,2-ETHANEDIOL, CITRIC ACID, Protein-glutamine gamma-glutamyltransferase
著者Takita, T, Mikami, B, Lei, Y, Jing, Y, Yamada, A, Yasukawa, K.
登録日2020-06-06
公開日2021-06-09
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Transglutaminase from Geobacillus stearothermophilus (without C-terminal extension)
To be published
3DUV
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BU of 3duv by Molmil
Crystal structure of 3-deoxy-manno-octulosonate cytidylyltransferase from Haemophilus influenzae complexed with the substrate 3-deoxy-manno-octulosonate in the-configuration
分子名称: 3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid, 3-deoxy-manno-octulosonate cytidylyltransferase, O-ACETALDEHYDYL-HEXAETHYLENE GLYCOL
著者Yoon, H.J, Ku, M.J, Mikami, B, Suh, S.W.
登録日2008-07-18
公開日2008-12-09
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structure of 3-deoxy-manno-octulosonate cytidylyltransferase from Haemophilus influenzae complexed with the substrate 3-deoxy-manno-octulosonate in the beta-configuration.
Acta Crystallogr.,Sect.D, 64, 2008
1AIV
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BU of 1aiv by Molmil
APO OVOTRANSFERRIN
分子名称: 2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, OVOTRANSFERRIN
著者Kurokawa, H, Dewan, J.C, Mikami, B, Sacchettini, J.C, Hirose, M.
登録日1997-04-28
公開日1998-04-29
最終更新日2023-08-02
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Crystal structure of hen apo-ovotransferrin. Both lobes adopt an open conformation upon loss of iron
J.Biol.Chem., 274, 1999
4JY2
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BU of 4jy2 by Molmil
Crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase, native and unliganded form
分子名称: 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase, BETA-MERCAPTOETHANOL, FLAVIN-ADENINE DINUCLEOTIDE, ...
著者Kobayashi, J, Yoshida, H, Kamitori, S, Hayashi, H, Mizutani, K, Takahashi, N, Mikami, B, Yagi, T.
登録日2013-03-28
公開日2014-04-02
実験手法X-RAY DIFFRACTION (1.935 Å)
主引用文献Crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase
To be Published
7EKD
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BU of 7ekd by Molmil
Crystal structure of gibberellin 3-oxidase 2 (GA3ox2) in rice
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-OXOGLUTARIC ACID, Gibberellin 3-beta-dioxygenase 2, ...
著者Takehara, S, Kawai, K, Mikami, B, Ueguchi-Tanaka, M.
登録日2021-04-05
公開日2022-02-16
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.899 Å)
主引用文献Evolutionary alterations in gene expression and enzymatic activities of gibberellin 3-oxidase 1 in Oryza.
Commun Biol, 5, 2022
7E8R
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BU of 7e8r by Molmil
EcoT38I restriction endonuclease
分子名称: EcoT38I restriction endonuclease, GLYCEROL
著者Kita, K, Mikami, B.
登録日2021-03-02
公開日2022-03-02
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural analysis of EcoT38I restriction endonuclease
To Be Published
4JY3
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Crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase, 5-pyridoxic acid bound form
分子名称: 1,2-ETHANEDIOL, 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase, 5-hydroxy-4-(hydroxymethyl)-6-methylpyridine-3-carboxylic acid, ...
著者Kobayashi, J, Yoshida, H, Kamitori, S, Hayashi, H, Mizutani, K, Takahashi, N, Mikami, B, Yagi, T.
登録日2013-03-29
公開日2014-04-02
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.77 Å)
主引用文献Crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase
To be Published

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件を2024-06-05に公開中

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