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PDB: 36 件
3HYX
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BU of 3hyx by Molmil
3-D X-Ray structure of the sulfide:quinone oxidoreductase from Aquifex aeolicus in complex with Aurachin C
分子名称: 1-hydroxy-2-methyl-3-[(2E,6E)-3,7,11-trimethyldodeca-2,6,10-trien-1-yl]quinolin-4(1H)-one, DODECYL-BETA-D-MALTOSIDE, FLAVIN-ADENINE DINUCLEOTIDE, ...
著者Marcia, M, Ermler, U, Peng, G.H, Michel, H.
登録日2009-06-23
公開日2009-07-14
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献The structure of Aquifex aeolicus sulfide:quinone oxidoreductase, a basis to understand sulfide detoxification and respiration
Proc.Natl.Acad.Sci.USA, 106, 2009
3HYV
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BU of 3hyv by Molmil
3-D X-Ray structure of the sulfide:quinone oxidoreductase from the hyperthermophilic bacterium Aquifex aeolicus
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, DODECYL-BETA-D-MALTOSIDE, FLAVIN-ADENINE DINUCLEOTIDE, ...
著者Marcia, M, Ermler, U, Peng, G.H, Michel, H.
登録日2009-06-23
公開日2009-07-14
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献The structure of Aquifex aeolicus sulfide:quinone oxidoreductase, a basis to understand sulfide detoxification and respiration
Proc.Natl.Acad.Sci.USA, 106, 2009
3HYW
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BU of 3hyw by Molmil
3-D X-Ray structure of the sulfide:quinone oxidoreductase of the hyperthermophilic bacterium Aquifex aeolicus in complex with decylubiquinone
分子名称: 2-decyl-5,6-dimethoxy-3-methylcyclohexa-2,5-diene-1,4-dione, DODECYL-BETA-D-MALTOSIDE, FLAVIN-ADENINE DINUCLEOTIDE, ...
著者Marcia, M, Ermler, U, Peng, G.H, Michel, H.
登録日2009-06-23
公開日2009-07-14
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献The structure of Aquifex aeolicus sulfide:quinone oxidoreductase, a basis to understand sulfide detoxification and respiration
Proc.Natl.Acad.Sci.USA, 106, 2009
6T3N
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BU of 6t3n by Molmil
Structure of Oceanobacillus iheyensis group II intron G-mutant (C289G/C358G/G385C) in the presence of Na+, Mg2+ and 5'-exon
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Group IIC Intron Ribozyme, MAGNESIUM ION, ...
著者Marcia, M, Pyle, A.M.
登録日2019-10-11
公開日2020-05-13
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (3.22 Å)
主引用文献Visualizing group II intron dynamics between the first and second steps of splicing.
Nat Commun, 11, 2020
6T3R
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BU of 6t3r by Molmil
Structure of Oceanobacillus iheyensis group II intron U-mutant (C289U/C358U/G385A) in the presence of K+, Mg2+ and 5'-exon
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Group IIC Intron Ribozyme, MAGNESIUM ION, ...
著者Marcia, M, Pyle, A.M.
登録日2019-10-11
公開日2020-05-13
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (3.57 Å)
主引用文献Visualizing group II intron dynamics between the first and second steps of splicing.
Nat Commun, 11, 2020
6T3K
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BU of 6t3k by Molmil
Structure of Oceanobacillus iheyensis group II intron G-mutant (C289G/C358G/G385C) in the presence of K+, Mg2+ and 5'-exon
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Group IIC Intron Ribozyme, MAGNESIUM ION, ...
著者Marcia, M, Pyle, A.M.
登録日2019-10-11
公開日2020-05-13
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (3.44 Å)
主引用文献Visualizing group II intron dynamics between the first and second steps of splicing.
Nat Commun, 11, 2020
6T3S
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BU of 6t3s by Molmil
Structure of Oceanobacillus iheyensis group II intron U-mutant (C289U/C358U/G385A) in the presence of Na+, Mg2+ and 5'-exon
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Group IIC Intron Ribozyme, MAGNESIUM ION, ...
著者Marcia, M, Pyle, A.M.
登録日2019-10-11
公開日2020-05-13
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (3.28 Å)
主引用文献Visualizing group II intron dynamics between the first and second steps of splicing.
Nat Commun, 11, 2020
4E8N
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BU of 4e8n by Molmil
Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of NH4+ and Mg2+
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, AMMONIUM ION, Group IIC intron, ...
著者Marcia, M, Pyle, A.M.
登録日2012-03-20
公開日2012-11-14
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.96 Å)
主引用文献Visualizing Group II Intron Catalysis through the Stages of Splicing.
Cell(Cambridge,Mass.), 151, 2012
4E8P
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BU of 4e8p by Molmil
Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Rb+ and Mg2+
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Group IIC intron, MAGNESIUM ION, ...
著者Marcia, M, Pyle, A.M.
登録日2012-03-20
公開日2012-11-14
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (3.28 Å)
主引用文献Visualizing Group II Intron Catalysis through the Stages of Splicing.
Cell(Cambridge,Mass.), 151, 2012
4E8K
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BU of 4e8k by Molmil
Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and a non-hydrolyzed oligonucleotide substrate
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, 5'-R(*CP*G*AP*UP*UP*UP*AP*UP*UP*A)-3', CALCIUM ION, ...
著者Marcia, M, Pyle, A.M.
登録日2012-03-20
公開日2012-11-14
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (3.03 Å)
主引用文献Visualizing Group II Intron Catalysis through the Stages of Splicing.
Cell(Cambridge,Mass.), 151, 2012
4FAX
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BU of 4fax by Molmil
Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Na+ and Mg2+
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Group IIC intron, MAGNESIUM ION, ...
著者Marcia, M, Pyle, A.M.
登録日2012-05-22
公開日2012-11-14
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Visualizing Group II Intron Catalysis through the Stages of Splicing.
Cell(Cambridge,Mass.), 151, 2012
4FAR
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BU of 4far by Molmil
Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and 5'-exon
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Group IIC intron, MAGNESIUM ION, ...
著者Marcia, M, Pyle, A.M.
登録日2012-05-22
公開日2012-11-14
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.86 Å)
主引用文献Visualizing Group II Intron Catalysis through the Stages of Splicing.
Cell(Cambridge,Mass.), 151, 2012
4FAU
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BU of 4fau by Molmil
Structure of Oceanobacillus iheyensis group II intron in the presence of Li+, Mg2+ and 5'-exon
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Group IIC intron, MAGNESIUM ION, ...
著者Marcia, M, Pyle, A.M.
登録日2012-05-22
公開日2012-11-14
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.87 Å)
主引用文献Visualizing Group II Intron Catalysis through the Stages of Splicing.
Cell(Cambridge,Mass.), 151, 2012
4FAQ
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BU of 4faq by Molmil
Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and 5'-exon
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CALCIUM ION, Group IIC intron, ...
著者Marcia, M, Pyle, A.M.
登録日2012-05-22
公開日2012-11-14
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (3.11 Å)
主引用文献Visualizing Group II Intron Catalysis through the Stages of Splicing.
Cell(Cambridge,Mass.), 151, 2012
4FB0
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BU of 4fb0 by Molmil
Structure of Oceanobacillus iheyensis group II intron C377G mutant in a ligand-free state in the presence of K+ and Mg2+
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Group IIC intron, MAGNESIUM ION, ...
著者Marcia, M, Pyle, A.M.
登録日2012-05-22
公開日2012-11-14
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (3.22 Å)
主引用文献Visualizing Group II Intron Catalysis through the Stages of Splicing.
Cell(Cambridge,Mass.), 151, 2012
4FAW
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BU of 4faw by Molmil
Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and a hydrolyzed oligonucleotide fragment
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, 5'-R(*A*UP*UP*UP*AP*UP*UP*A)-3', Group IIC intron, ...
著者Marcia, M, Pyle, A.M.
登録日2012-05-22
公開日2012-11-14
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Visualizing Group II Intron Catalysis through the Stages of Splicing.
Cell(Cambridge,Mass.), 151, 2012
4E8T
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BU of 4e8t by Molmil
Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and an oligonucleotide fragment substrate (low energy dataset)
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, 5'-R(*AP*UP*UP*UP*AP*UP*UP*A)-3', CALCIUM ION, ...
著者Marcia, M, Pyle, A.M.
登録日2012-03-20
公開日2012-11-14
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (3.34 Å)
主引用文献Visualizing Group II Intron Catalysis through the Stages of Splicing.
Cell(Cambridge,Mass.), 151, 2012
4E8Q
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BU of 4e8q by Molmil
Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Tl+ and Mg2+
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Group IIC intron, MAGNESIUM ION, ...
著者Marcia, M, Pyle, A.M.
登録日2012-03-20
公開日2012-11-14
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.84 Å)
主引用文献Visualizing Group II Intron Catalysis through the Stages of Splicing.
Cell(Cambridge,Mass.), 151, 2012
4E8M
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BU of 4e8m by Molmil
Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of K+ and Mg2+
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Group IIC intron, MAGNESIUM ION, ...
著者Marcia, M, Pyle, A.M.
登録日2012-03-20
公開日2012-11-14
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献Visualizing Group II Intron Catalysis through the Stages of Splicing.
Cell(Cambridge,Mass.), 151, 2012
4E8V
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BU of 4e8v by Molmil
Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of K+ and Ba2+
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, BARIUM ION, Group IIC intron, ...
著者Marcia, M, Pyle, A.M.
登録日2012-03-20
公開日2012-11-14
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (3.995 Å)
主引用文献Visualizing Group II Intron Catalysis through the Stages of Splicing.
Cell(Cambridge,Mass.), 151, 2012
4E8R
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BU of 4e8r by Molmil
Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Cs+ and Mg2+
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CESIUM ION, Group IIC intron, ...
著者Marcia, M, Pyle, A.M.
登録日2012-03-20
公開日2012-11-14
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (3.36 Å)
主引用文献Visualizing Group II Intron Catalysis through the Stages of Splicing.
Cell(Cambridge,Mass.), 151, 2012
4Y1O
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BU of 4y1o by Molmil
Oceanobacillus iheyensis group II intron domain 1
分子名称: MAGNESIUM ION, POTASSIUM ION, group II intron, ...
著者Zhao, C, Rajashankar, K.R, Marcia, M, Pyle, A.M.
登録日2015-02-08
公開日2015-10-14
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (2.95 Å)
主引用文献Crystal structure of group II intron domain 1 reveals a template for RNA assembly.
Nat.Chem.Biol., 11, 2015
4Y1N
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BU of 4y1n by Molmil
Oceanobacillus iheyensis group II intron domain 1 with iridium hexamine
分子名称: IRIDIUM HEXAMMINE ION, MAGNESIUM ION, POTASSIUM ION, ...
著者Zhao, C, Rajashankar, K.R, Marcia, M, Pyle, A.M.
登録日2015-02-08
公開日2015-10-14
最終更新日2024-02-28
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献Crystal structure of group II intron domain 1 reveals a template for RNA assembly.
Nat.Chem.Biol., 11, 2015
8OLW
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BU of 8olw by Molmil
Structure of Oceanobacillus iheyensis group II intron before the first step of splicing in the presence of K+, Ca2+ and intronistat B
分子名称: CALCIUM ION, Group IIC intron, POTASSIUM ION
著者Silvestri, I, Marcia, M.
登録日2023-03-30
公開日2024-06-19
最終更新日2024-07-03
実験手法X-RAY DIFFRACTION (4 Å)
主引用文献Targeting the conserved active site of splicing machines with specific and selective small molecule modulators.
Nat Commun, 15, 2024
8OLV
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BU of 8olv by Molmil
Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and ARN25850
分子名称: 2-[2,6-bis(bromanyl)-3,4,5-tris(oxidanyl)phenyl]carbonyl-~{N}-(2-pyrrolidin-1-ylethyl)-1-benzofuran-5-carboxamide, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Group IIC intron, ...
著者Silvestri, I, Marcia, M.
登録日2023-03-30
公開日2024-06-19
最終更新日2024-07-03
実験手法X-RAY DIFFRACTION (2.81 Å)
主引用文献Targeting the conserved active site of splicing machines with specific and selective small molecule modulators.
Nat Commun, 15, 2024

 

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