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PDB: 1227 results

4TVY
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BU of 4tvy by Molmil
Apo resorufin ligase
Descriptor: 5-(3,7-dihydroxy-10H-phenoxazin-2-yl)pentanamide, Lipoate-protein ligase A
Authors:Goldman, P.J, Drennan, C.L.
Deposit date:2014-06-28
Release date:2014-10-22
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.151 Å)
Cite:Computational design of a red fluorophore ligase for site-specific protein labeling in living cells.
Proc.Natl.Acad.Sci.USA, 111, 2014
5J0E
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BU of 5j0e by Molmil
Crystal structures of Pribnow box consensus promoter sequence (P32)
Descriptor: Complementary sequence, Pribnow box consensus promoter sequence, ZINC ION
Authors:Mandal, P.K, Collie, G.W, Kauffmann, B, Huc, I.
Deposit date:2016-03-28
Release date:2016-05-18
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.81 Å)
Cite:Structure elucidation of the Pribnow box consensus promoter sequence by racemic DNA crystallography.
Nucleic Acids Res., 44, 2016
3M62
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BU of 3m62 by Molmil
Crystal structure of Ufd2 in complex with the ubiquitin-like (UBL) domain of Rad23
Descriptor: PENTAETHYLENE GLYCOL, POTASSIUM ION, UV excision repair protein RAD23, ...
Authors:Haenzelmann, P, Schindelin, H.
Deposit date:2010-03-15
Release date:2010-04-28
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The yeast E4 ubiquitin ligase Ufd2 interacts with the ubiquitin-like domains of Rad23 and Dsk2 via a novel and distinct ubiquitin-like binding domain.
J.Biol.Chem., 285, 2010
5ET9
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BU of 5et9 by Molmil
Racemic crystal structures of Pribnow box consensus promoter sequence (P21/n)
Descriptor: BARIUM ION, Pribnow box consensus sequence- template strand, Pribnow box non-template strand
Authors:Mandal, P.K, Collie, G.W, Kauffmann, B, Srivastava, S.C, Huc, I.
Deposit date:2015-11-17
Release date:2016-05-18
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Structure elucidation of the Pribnow box consensus promoter sequence by racemic DNA crystallography.
Nucleic Acids Res., 44, 2016
5EYQ
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BU of 5eyq by Molmil
Racemic crystal structures of Pribnow box consensus promoter sequence (Pnna)
Descriptor: Complementary strand, Pribnow box template strand, SODIUM ION
Authors:Mandal, P.K, Collie, G.W, Kauffmann, B, Srivastava, S.C, Huc, I.
Deposit date:2015-11-25
Release date:2016-05-18
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure elucidation of the Pribnow box consensus promoter sequence by racemic DNA crystallography.
Nucleic Acids Res., 44, 2016
3M63
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BU of 3m63 by Molmil
Crystal structure of Ufd2 in complex with the ubiquitin-like (UBL) domain of Dsk2
Descriptor: PENTAETHYLENE GLYCOL, POTASSIUM ION, Ubiquitin conjugation factor E4, ...
Authors:Haenzelmann, P, Schindelin, H.
Deposit date:2010-03-15
Release date:2010-04-28
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The yeast E4 ubiquitin ligase Ufd2 interacts with the ubiquitin-like domains of Rad23 and Dsk2 via a novel and distinct ubiquitin-like binding domain.
J.Biol.Chem., 285, 2010
5EZF
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BU of 5ezf by Molmil
Racemic crystal structures of Pribnow box consensus promoter sequence (Pbca)
Descriptor: CALCIUM ION, Complementary strand, Pribnow box template strand
Authors:Mandal, P.K, Collie, G.W, Kauffmann, B, Srivastava, S.C, Huc, I.
Deposit date:2015-11-26
Release date:2016-05-18
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Structure elucidation of the Pribnow box consensus promoter sequence by racemic DNA crystallography.
Nucleic Acids Res., 44, 2016
5F26
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BU of 5f26 by Molmil
Crystal structures of Pribnow box consensus promoter sequence (P63)
Descriptor: Complementary strand, Pribnow box consensus sequence strand
Authors:Mandal, P.K, Collie, G.W, Kauffmann, B, Srivastava, S.C, Huc, I.
Deposit date:2015-12-01
Release date:2016-05-18
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure elucidation of the Pribnow box consensus promoter sequence by racemic DNA crystallography.
Nucleic Acids Res., 44, 2016
5EWB
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BU of 5ewb by Molmil
Racemic crystal structures of Pribnow box consensus promoter sequence (P21/c)
Descriptor: PRIBNOW BOX CONSENSUS SEQUENCE- NON-TEMPLATE STRAND, PRIBNOW BOX CONSENSUS SEQUENCE- TEMPLATE STRAND
Authors:Mandal, P.K, Collie, G.W, Kauffmann, B, Srivastava, S.C, Huc, I.
Deposit date:2015-11-20
Release date:2016-05-18
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.694 Å)
Cite:Structure elucidation of the Pribnow box consensus promoter sequence by racemic DNA crystallography.
Nucleic Acids Res., 44, 2016
3OC3
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BU of 3oc3 by Molmil
Crystal structure of the Mot1 N-terminal domain in complex with TBP
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, HELICASE MOT1, TRANSCRIPTION INITIATION FACTOR TFIID (TFIID-1)
Authors:Wollmann, P, Cui, S, Viswanathan, R, Berninghausen, O, Wells, M.N, Moldt, M, Witte, G, Butryn, A, Wendler, P, Beckmann, R, Auble, D.T, Hopfner, K.-P.
Deposit date:2010-08-09
Release date:2011-07-13
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structure and mechanism of the Swi2/Snf2 remodeller Mot1 in complex with its substrate TBP.
Nature, 475, 2011
8ARU
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BU of 8aru by Molmil
Crystal Structure of human formylglycine generating enzyme
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, Formylglycine-generating enzyme
Authors:Neumann, P, Dickmanns, A, Ficner, R, Rudolph, M.G.
Deposit date:2022-08-17
Release date:2023-08-23
Method:X-RAY DIFFRACTION (1.08 Å)
Cite:Crystal Structure of human formylglycine generating enzyme E130A mutant
To be published
4KXX
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BU of 4kxx by Molmil
Human transketolase in covalent complex with donor ketose D-sedoheptulose-7-phosphate
Descriptor: (2R,3R,4S,5R,6S)-2,3,4,5,6,7-hexahydroxyheptyl dihydrogen phosphate, 1,2-ETHANEDIOL, MAGNESIUM ION, ...
Authors:Neumann, P, Luedtke, S, Ficner, R, Tittmann, K.
Deposit date:2013-05-28
Release date:2013-08-21
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.03 Å)
Cite:Sub-angstrom-resolution crystallography reveals physical distortions that enhance reactivity of a covalent enzymatic intermediate.
Nat Chem, 5, 2013
6GN2
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BU of 6gn2 by Molmil
Racemic crystal structure of A-DNA duplex formed from d(CCCGGG) in space group R3
Descriptor: DNA (5'-D(*CP*CP*CP*GP*GP*G)-3'), trimethylamine oxide
Authors:Mandal, P.K, Collie, G.W, Kauffmann, B, Huc, I.
Deposit date:2018-05-29
Release date:2019-09-11
Last modified:2024-06-12
Method:X-RAY DIFFRACTION (2.48 Å)
Cite:Racemic crystal structures of A-DNA duplexes.
Acta Crystallogr D Struct Biol, 78, 2022
4KXV
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BU of 4kxv by Molmil
Human transketolase in covalent complex with donor ketose D-xylulose-5-phosphate, crystal 1
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, D-XYLITOL-5-PHOSPHATE, ...
Authors:Neumann, P, Luedtke, S, Ficner, R, Tittmann, K.
Deposit date:2013-05-28
Release date:2013-08-21
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (0.97 Å)
Cite:Sub-angstrom-resolution crystallography reveals physical distortions that enhance reactivity of a covalent enzymatic intermediate.
Nat Chem, 5, 2013
3MWQ
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BU of 3mwq by Molmil
Crystal structure of ribonuclease A tandem enzymes and their interaction with the cytosolic ribonuclease inhibitor
Descriptor: GLYCEROL, Ribonuclease pancreatic, LINKER, ...
Authors:Neumann, P, Leich, F.
Deposit date:2010-05-06
Release date:2011-02-09
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Crystal structure of RNase A tandem enzymes and their interaction with the cytosolic ribonuclease inhibitor
Febs J., 278, 2011
3MWR
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BU of 3mwr by Molmil
Crystal structure of ribonuclease A tandem enzymes and their interaction with the cytosolic ribonuclease inhibitor
Descriptor: GLYCEROL, Ribonuclease pancreatic, LINKER, ...
Authors:Neumann, P, Leich, F.
Deposit date:2010-05-06
Release date:2011-02-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of RNase A tandem enzymes and their interaction with the cytosolic ribonuclease inhibitor
Febs J., 278, 2011
4KXY
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BU of 4kxy by Molmil
Human transketolase in complex with ThDP analogue (R)-2-(1,2-dihydroxyethyl)-3-deaza-ThDP
Descriptor: 1,2-ETHANEDIOL, 2-{4-[(4-amino-2-methylpyrimidin-5-yl)methyl]-5-[(1R)-1,2-dihydroxyethyl]-3-methylthiophen-2-yl}ethyl trihydrogen diphosphate, CALCIUM ION, ...
Authors:Neumann, P, Luedtke, S, Erixon, K.M, Leeper, F, Kluger, R, Ficner, R, Tittmann, K.
Deposit date:2013-05-28
Release date:2013-08-21
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.26 Å)
Cite:Sub-angstrom-resolution crystallography reveals physical distortions that enhance reactivity of a covalent enzymatic intermediate.
Nat Chem, 5, 2013
4KXW
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BU of 4kxw by Molmil
Human transketolase in covalent complex with donor ketose D-xylulose-5-phosphate, crystal 2
Descriptor: 1,2-ETHANEDIOL, D-XYLITOL-5-PHOSPHATE, MAGNESIUM ION, ...
Authors:Neumann, P, Luedtke, S, Ficner, R, Tittmann, K.
Deposit date:2013-05-28
Release date:2013-08-21
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (0.97 Å)
Cite:Sub-angstrom-resolution crystallography reveals physical distortions that enhance reactivity of a covalent enzymatic intermediate.
Nat Chem, 5, 2013
1XQM
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BU of 1xqm by Molmil
Variations on the GFP chromophore scaffold: A fragmented 5-membered heterocycle revealed in the 2.1A crystal structure of a non-fluorescent chromoprotein
Descriptor: ACETIC ACID, kindling fluorescent protein
Authors:Wilmann, P.G, Petersen, J, Devenish, R.J, Prescott, M, Rossjohn, J.
Deposit date:2004-10-13
Release date:2004-11-16
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Variations on the GFP chromophore: A polypeptide fragmentation within the chromophore revealed in the 2.1-A crystal structure of a nonfluorescent chromoprotein from Anemonia sulcata
J.Biol.Chem., 280, 2005
6GN3
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BU of 6gn3 by Molmil
Racemic crystal structure of A-DNA duplex formed from d(CCCGGG) in space group P21/n
Descriptor: CHLORIDE ION, COBALT (II) ION, DNA (5'-D(*CP*CP*CP*GP*GP*G)-3'), ...
Authors:Mandal, P.K, Collie, G.W, Kauffmann, B, Huc, I.
Deposit date:2018-05-29
Release date:2019-09-11
Last modified:2024-06-12
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Racemic crystal structures of A-DNA duplexes.
Acta Crystallogr D Struct Biol, 78, 2022
4KGD
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BU of 4kgd by Molmil
High-resolution crystal structure of pyruvate oxidase from L. plantarum in complex with phosphate
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, MAGNESIUM ION, ...
Authors:Neumann, P, Tittmann, K.
Deposit date:2013-04-29
Release date:2013-06-12
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.06 Å)
Cite:Observation of a stable carbene at the active site of a thiamin enzyme.
Nat.Chem.Biol., 9, 2013
3FD7
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BU of 3fd7 by Molmil
Crystal structure of Onconase C87A/C104A-ONC
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, Protein P-30, ...
Authors:Neumann, P, Schulenburg, C, Arnold, U, Ulbrich-Hofmann, R, Stubbs, M.T.
Deposit date:2008-11-25
Release date:2009-12-08
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.531 Å)
Cite:Impact of the C-terminal disulfide bond on the folding and stability of onconase.
Chembiochem, 11, 2010
2FL8
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BU of 2fl8 by Molmil
Fitting of the gp10 trimer structure into the cryoEM map of the bacteriophage T4 baseplate in the hexagonal conformation.
Descriptor: Baseplate structural protein Gp10
Authors:Leiman, P.G, Shneider, M.M, Mesyanzhinov, V.V, Rossmann, M.G.
Deposit date:2006-01-05
Release date:2006-04-04
Last modified:2024-02-14
Method:ELECTRON MICROSCOPY (12 Å)
Cite:Evolution of bacteriophage tails: structure of t4 gene product 10
J.Mol.Biol., 358, 2006
4KXU
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BU of 4kxu by Molmil
Human transketolase in covalent complex with donor ketose D-fructose-6-phosphate
Descriptor: 1,2-ETHANEDIOL, D-SORBITOL-6-PHOSPHATE, MAGNESIUM ION, ...
Authors:Neumann, P, Luedtke, S, Ficner, R, Tittmann, K.
Deposit date:2013-05-28
Release date:2013-08-21
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (0.98 Å)
Cite:Sub-angstrom-resolution crystallography reveals physical distortions that enhance reactivity of a covalent enzymatic intermediate.
Nat Chem, 5, 2013
2FKK
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BU of 2fkk by Molmil
Crystal structure of the C-terminal domain of the bacteriophage T4 gene product 10
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, BROMIDE ION, ...
Authors:Leiman, P.G, Shneider, M.M, Mesyanzhinov, V.V, Rossmann, M.G.
Deposit date:2006-01-04
Release date:2006-04-04
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Evolution of bacteriophage tails: structure of t4 gene product 10
J.Mol.Biol., 358, 2006

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