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PDB: 52259 results

5CUE
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BU of 5cue by Molmil
Crystal structure of the bromodomain of bromodomain adjacent to zinc finger domain protein 2B (BAZ2B) in complex with AGN-PC-04G0SS (SGC - Diamond I04-1 fragment screening)
Descriptor: 1,2-ETHANEDIOL, 5-chloro-N,1-dimethyl-1H-pyrazole-4-carboxamide, Bromodomain adjacent to zinc finger domain protein 2B
Authors:Bradley, A, Pearce, N, Krojer, T, Ng, J, Talon, R, Vollmar, M, Jose, B, von Delft, F, Bountra, C, Arrowsmith, C.H, Edwards, A, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2015-07-24
Release date:2015-09-09
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Crystal structure of the second bromodomain of bromodomain adjancent to zinc finger domain protein 2B (BAZ2B) in complex with AGN-PC-04G0SS (SGC - Diamond I04-1 fragment screening)
To be published
2WYD
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BU of 2wyd by Molmil
The quorum quenching N-acyl homoserine lactone acylase PvdQ in complex with dodecanoic acid
Descriptor: ACYL-HOMOSERINE LACTONE ACYLASE PVDQ SUBUNIT ALPHA, ACYL-HOMOSERINE LACTONE ACYLASE PVDQ SUBUNIT BETA, GLYCEROL, ...
Authors:Bokhove, M, Nadal Jimenez, P, Quax, W.J, Dijkstra, B.W.
Deposit date:2009-11-16
Release date:2009-12-29
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.901 Å)
Cite:The Quorum-Quenching N-Acyl Homoserine Lactone Acylase Pvdq is an Ntn-Hydrolase with an Unusual Substrate-Binding Pocket
Proc.Natl.Acad.Sci.USA, 107, 2010
1Z9J
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BU of 1z9j by Molmil
Photosynthetic Reaction Center from Rhodobacter sphaeroides
Descriptor: BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, FE (III) ION, ...
Authors:Thielges, M, Uyeda, G, Camara-Artigas, A, Kalman, L, Williams, J.C, Allen, J.P.
Deposit date:2005-04-02
Release date:2005-06-07
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (4.5 Å)
Cite:Design of a Redox-Linked Active Metal Site: Manganese Bound to Bacterial Reaction Centers at a Site Resembling That of Photosystem II
Biochemistry, 44, 2005
2X2A
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BU of 2x2a by Molmil
Free acetyl-CypA trigonal form
Descriptor: GLYCEROL, PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A, SULFATE ION
Authors:Lammers, M, Neumann, H, Chin, J.W, James, L.C.
Deposit date:2010-01-12
Release date:2010-03-23
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Acetylation Regulates Cyclophilin a Catalysis, Immunosuppression and HIV Isomerization.
Nat.Chem.Biol., 6, 2010
2WLR
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BU of 2wlr by Molmil
Putative thiosulfate sulfurtransferase YnjE
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, PUTATIVE THIOSULFATE SULFURTRANSFERASE YNJE
Authors:Declercq, J.P, Smeets, A, Depuydt, M, Collet, J.F.
Deposit date:2009-06-25
Release date:2010-09-01
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structural Analysis of Ynje, a Putative Thiosulfate Sulfurtransferase
To be Published
5CW2
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BU of 5cw2 by Molmil
Crystal structure of Epoxide Hydrolase A from Mycobacterium thermoresistibile
Descriptor: 1,3-DIPHENYLUREA, Putative epoxide hydrolase EPHA, SODIUM ION
Authors:Schulz, E.C, Wilmanns, M.
Deposit date:2015-07-27
Release date:2016-08-17
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:The crystal structure of mycobacterial Epoxide Hydrolase A
To Be Published
1Z29
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BU of 1z29 by Molmil
Crystal Structures of SULT1A2 and SULT1A1*3: Implications in the bioactivation of N-hydroxy-2-acetylamino fluorine (OH-AAF)
Descriptor: ACETIC ACID, ADENOSINE-3'-5'-DIPHOSPHATE, CALCIUM ION, ...
Authors:Lu, J, Li, H, Liu, M.C, Zhang, J, Li, M, An, X, Chang, W.
Deposit date:2005-03-07
Release date:2006-05-30
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structures of SULT1A2 and SULT1A1 *3: insights into the substrate inhibition and the role of Tyr149 in SULT1A2.
Biochem.Biophys.Res.Commun., 396, 2010
2X2E
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BU of 2x2e by Molmil
Dynamin GTPase dimer, long axis form
Descriptor: DYNAMIN-1, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Chappie, J.S, Acharya, S, Leonard, M, Schmid, S.L, Dyda, F.
Deposit date:2010-01-12
Release date:2010-04-28
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:G Domain Dimerization Controls Dynamin'S Assembly-Stimulated Gtpase Activity.
Nature, 465, 2010
4YPQ
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BU of 4ypq by Molmil
Crystal structure of the ROR(gamma)t ligand binding domain in complex with 4-(1-(2-chloro-6-(trifluoromethyl)benzoyl)-1H-indazol-3-yl)benzoic acid
Descriptor: 4-{1-[2-chloro-6-(trifluoromethyl)benzoyl]-1H-indazol-3-yl}benzoic acid, MAGNESIUM ION, Nuclear receptor ROR-gamma
Authors:Leysen, S, Scheepstra, M, van Almen, G.C, Ottmann, C, Brunsveld, L.
Deposit date:2015-03-13
Release date:2015-12-23
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.32 Å)
Cite:Identification of an allosteric binding site for ROR gamma t inhibition.
Nat Commun, 6, 2015
2X2D
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BU of 2x2d by Molmil
acetyl-CypA:HIV-1 N-term capsid domain complex
Descriptor: CAPSID PROTEIN P24, PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A
Authors:Lammers, M, Neumann, H, Chin, J.W, James, L.C.
Deposit date:2010-01-12
Release date:2010-03-23
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Acetylation Regulates Cyclophilin a Catalysis, Immunosuppression and HIV Isomerisation
Nat.Chem.Biol., 6, 2010
3ZLW
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BU of 3zlw by Molmil
Crystal structure of MEK1 in complex with fragment 3
Descriptor: (1R)-1-hydroxy-1-methyl-2,3,6,7-tetrahydro-1H,5H-pyrido[3,2,1-ij]quinolin-5-one, DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 1 MAPK/ERK KINASE 1, MEK 1, ...
Authors:Amaning, K, Lowinsky, M, Vallee, F, Steier, V, Marcireau, C, Ugolini, A, Delorme, C, McCort, G, Andouche, C, Vougier, S, Llopart, S, Halland, N, Rak, A.
Deposit date:2013-02-04
Release date:2013-05-22
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:The Use of Virtual Screening and Differential Scanning Fluorimetry for the Rapid Identification of Fragments Active Against Mek1.
Bioorg.Med.Chem.Lett., 23, 2013
2WYC
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BU of 2wyc by Molmil
The quorum quenching N-acyl homoserine lactone acylase PvdQ in complex with 3-oxo-lauric acid
Descriptor: 3-OXODODECANOIC ACID, ACYL-HOMOSERINE LACTONE ACYLASE PVDQ SUBUNIT ALPHA, ACYL-HOMOSERINE LACTONE ACYLASE PVDQ SUBUNIT BETA, ...
Authors:Bokhove, M, Nadal Jimenez, P, Quax, W.J, Dijkstra, B.W.
Deposit date:2009-11-16
Release date:2009-12-29
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The Quorum-Quenching N-Acyl Homoserine Lactone Acylase Pvdq is an Ntn-Hydrolase with an Unusual Substrate-Binding Pocket
Proc.Natl.Acad.Sci.USA, 107, 2010
3NBY
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BU of 3nby by Molmil
Crystal structure of the PKI NES-CRM1-RanGTP nuclear export complex
Descriptor: Exportin-1, GTP-binding nuclear protein Ran, GUANOSINE-5'-TRIPHOSPHATE, ...
Authors:Guttler, T, Madl, T, Neumann, P, Deichsel, D, Corsini, L, Monecke, T, Ficner, R, Sattler, M, Gorlich, D.
Deposit date:2010-06-04
Release date:2010-10-27
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (3.42 Å)
Cite:NES consensus redefined by structures of PKI-type and Rev-type nuclear export signals bound to CRM1.
Nat.Struct.Mol.Biol., 17, 2010
2X25
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BU of 2x25 by Molmil
Free acetyl-CypA orthorhombic form
Descriptor: PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A
Authors:Lammers, M, Neumann, H, Chin, J.W, James, L.C.
Deposit date:2010-01-11
Release date:2010-03-23
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Acetylation Regulates Cyclophilin a Catalysis, Immunosuppression and HIV Isomerization.
Nat.Chem.Biol., 6, 2010
8BYK
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BU of 8byk by Molmil
The structure of MadC from Clostridium maddingley reveals new insights into class I lanthipeptide cyclases
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETATE ION, CHLORIDE ION, ...
Authors:Knospe, C.V, Kamel, M, Spitz, O, Hoeppner, A, Galle, S, Reiners, J, Kedrov, A, Smits, S.H, Schmitt, L.
Deposit date:2022-12-13
Release date:2023-02-22
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The structure of MadC from Clostridium maddingley reveals new insights into class I lanthipeptide cyclases.
Front Microbiol, 13, 2022
3ZLX
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BU of 3zlx by Molmil
Crystal structure of MEK1 in complex with fragment 18
Descriptor: 7-choro-6-[(3R)-pyrrolidin-3-ylmethoxy]isoquinolin-1(2H)-one, DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 1
Authors:Amaning, K, Lowinsky, M, Vallee, F, Steier, V, Marcireau, C, Ugolini, A, Delorme, C, McCort, G, Andouche, C, Vougier, S, Llopart, S, Halland, N, Rak, A.
Deposit date:2013-02-04
Release date:2013-05-22
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The Use of Virtual Screening and Differential Scanning Fluorimetry for the Rapid Identification of Fragments Active Against Mek1.
Bioorg.Med.Chem.Lett., 23, 2013
2XF5
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BU of 2xf5 by Molmil
Crystal structure of Bacillus subtilis SPP1 phage gp23.1, a putative chaperone.
Descriptor: GP23.1
Authors:Veesler, D, Blangy, S, Lichiere, J, Ortiz-Lombardia, M, Tavares, P, Campanacci, V, Cambillau, C.
Deposit date:2010-05-20
Release date:2010-08-11
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of Bacillus Subtilis Spp1 Phage Gp23.1, A Putative Chaperone.
Protein Sci., 19, 2010
5O5Q
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BU of 5o5q by Molmil
X-ray crystal structure of RapZ from Escherichia coli (P3221 space group)
Descriptor: RNase adapter protein RapZ, SULFATE ION
Authors:Gonzalez, G.M, Durica-Mitic, S, Hardwick, S.W, Moncrieffe, M, Resch, M, Neumann, P, Ficner, R, Gorke, B, Luisi, B.F.
Deposit date:2017-06-02
Release date:2017-08-30
Last modified:2017-11-01
Method:X-RAY DIFFRACTION (3.25 Å)
Cite:Structural insights into RapZ-mediated regulation of bacterial amino-sugar metabolism.
Nucleic Acids Res., 45, 2017
1Z54
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BU of 1z54 by Molmil
Crystal structure of a hypothetical protein TT1821 from Thermus thermophilus
Descriptor: GLYCEROL, probable thioesterase
Authors:Ihsanawati, Kaminishi, T, Murayama, K, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-03-17
Release date:2005-09-17
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of a hypothetical protein TT1821 from Thermus thermophilus
TO BE PUBLISHED
8BV6
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BU of 8bv6 by Molmil
An i-motif domain able to undergo pH-dependent conformational transitions (neutral structure)
Descriptor: DNA (5'-D(*CP*(DNR)P*GP*TP*TP*CP*(DNR)P*GP*TP*TP*TP*TP*TP*CP*CP*GP*TP*TP*CP*CP*GP*T)-3')
Authors:Serrano-Chacon, I, Mir, B, Cupellini, L, Colizzi, F, Orozco, M, Escaja, N, Gonzalez, C.
Deposit date:2022-12-01
Release date:2023-02-22
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:pH-Dependent Capping Interactions Induce Large-Scale Structural Transitions in i-Motifs.
J.Am.Chem.Soc., 145, 2023
4JET
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BU of 4jet by Molmil
2.2A resolution structure of Holo hemophore HasA from Yersinia pestis
Descriptor: CHLORIDE ION, Hemophore HasA, PROTOPORPHYRIN IX CONTAINING FE
Authors:Kumar, R, Lovell, S, Battaile, K.P, Rivera, M.
Deposit date:2013-02-27
Release date:2013-04-24
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The Hemophore HasA from Yersinia pestis (HasAyp) Coordinates Hemin with a Single Residue, Tyr75, and with Minimal Conformational Change.
Biochemistry, 52, 2013
2XF4
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BU of 2xf4 by Molmil
Crystal structure of Salmonella enterica serovar typhimurium YcbL
Descriptor: HYDROXYACYLGLUTATHIONE HYDROLASE, TETRAETHYLENE GLYCOL, ZINC ION
Authors:Stamp, A, Owen, P, El Omari, K, Nichols, C, Lockyer, M, Lamb, H, Charles, I, Hawkins, A.R, Stammers, D.K.
Deposit date:2010-05-20
Release date:2010-07-28
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural and Functional Characterization of Salmonella Enterica Serovar Typhimurium Ycbl: An Unusual Type II Glyoxalase
Protein Sci., 19, 2010
1Z6A
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BU of 1z6a by Molmil
Sulfolobus solfataricus SWI2/SNF2 ATPase core domain
Descriptor: Helicase of the snf2/rad54 family, MERCURY (II) ION, PHOSPHATE ION
Authors:Duerr, H, Koerner, C, Mueller, M, Hickmann, V, Hopfner, K.P.
Deposit date:2005-03-22
Release date:2005-05-03
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (3 Å)
Cite:X-ray structures of the Sulfolobus solfataricus SWI2/SNF2 ATPase core and its complex with DNA
Cell(Cambridge,Mass.), 121, 2005
3NDF
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BU of 3ndf by Molmil
Cleaved antitrypsin with P8-P6 Asp
Descriptor: Alpha-1-antitrypsin
Authors:Huntington, J.A, Sendall, T.J, Yamasaki, M.
Deposit date:2010-06-07
Release date:2010-07-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Loop-sheet mechanism of serpin polymerization tested by reactive center loop mutations
J. Biol. Chem., 285, 2010
8BXA
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BU of 8bxa by Molmil
Crystal structure of ribosome binding factor A (RbfA) from S. aureus
Descriptor: Ribosome-binding factor A
Authors:Fatkhullin, B, Bikmullin, A, Gabdulkhakov, A, Khusainov, I, Validov, S, Usachev, K, Yusupov, M.
Deposit date:2022-12-08
Release date:2023-02-22
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.22 Å)
Cite:Yet Another Similarity between Mitochondrial and Bacterial Ribosomal Small Subunit Biogenesis Obtained by Structural Characterization of RbfA from S. aureus.
Int J Mol Sci, 24, 2023

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