Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 51964 results

5LSO
DownloadVisualize
BU of 5lso by Molmil
Crystal structure of SPF45 UHM domain with cyclic peptide inhibitor
Descriptor: LYS-SER-ARG-TRP-ASP-GLU, Splicing factor 45
Authors:Jagtap, P.K.A, Garg, D, Sattler, M.
Deposit date:2016-09-05
Release date:2016-10-26
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.22 Å)
Cite:Rational Design of Cyclic Peptide Inhibitors of U2AF Homology Motif (UHM) Domains To Modulate Pre-mRNA Splicing.
J. Med. Chem., 59, 2016
5LTH
DownloadVisualize
BU of 5lth by Molmil
Crystal structure of the alpha subunit of heme dependent oxidative N-demethylase (HODM) in complex with the dimethylamine substrate
Descriptor: DI(HYDROXYETHYL)ETHER, DIMETHYLAMINE, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Ortmayer, M, Leys, D.
Deposit date:2016-09-06
Release date:2016-11-09
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:An oxidative N-demethylase reveals PAS transition from ubiquitous sensor to enzyme.
Nature, 539, 2016
5AUW
DownloadVisualize
BU of 5auw by Molmil
Crystal structure of DAPK1 in complex with quercetin.
Descriptor: 3,5,7,3',4'-PENTAHYDROXYFLAVONE, Death-associated protein kinase 1
Authors:Yokoyama, T, Mizuguchi, M.
Deposit date:2015-06-10
Release date:2015-10-07
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural Insight into the Interactions between Death-Associated Protein Kinase 1 and Natural Flavonoids.
J.Med.Chem., 58, 2015
7C6F
DownloadVisualize
BU of 7c6f by Molmil
Crystal structure of beta-glycosides-binding protein (W177X) of ABC transporter in an open state
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, CHLORIDE ION, ...
Authors:Kanaujia, S.P, Chandravanshi, M, Samanta, R.
Deposit date:2020-05-21
Release date:2020-09-16
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Conformational Trapping of a beta-Glucosides-Binding Protein Unveils the Selective Two-Step Ligand-Binding Mechanism of ABC Importers.
J.Mol.Biol., 432, 2020
3OZR
DownloadVisualize
BU of 3ozr by Molmil
Rat catechol O-methyltransferase in complex with a catechol-type, bisubstrate inhibitor, no substituent in the adenine site - humanized form
Descriptor: CHLORIDE ION, Catechol O-methyltransferase, MAGNESIUM ION, ...
Authors:Ehler, A, Schlatter, D, Stihle, M, Benz, J, Rudolph, M.G.
Deposit date:2010-09-27
Release date:2011-03-16
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Molecular Recognition at the Active Site of Catechol-O-methyltransferase (COMT): Adenine Replacements in Bisubstrate Inhibitors
Chemistry, 17, 2011
7C6M
DownloadVisualize
BU of 7c6m by Molmil
Crystal structure of beta-glycosides-binding protein (W177X) of ABC transporter in a closed state bound to cellotetraose (Form I)
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, CHLORIDE ION, GLYCEROL, ...
Authors:Kanaujia, S.P, Chandravanshi, M, Samanta, R.
Deposit date:2020-05-21
Release date:2020-09-16
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Conformational Trapping of a beta-Glucosides-Binding Protein Unveils the Selective Two-Step Ligand-Binding Mechanism of ABC Importers.
J.Mol.Biol., 432, 2020
5BSE
DownloadVisualize
BU of 5bse by Molmil
Crystal structure of Medicago truncatula (delta)1-Pyrroline-5-Carboxylate Reductase (MtP5CR)
Descriptor: 3[N-MORPHOLINO]PROPANE SULFONIC ACID, CHLORIDE ION, Pyrroline-5-carboxylate reductase
Authors:Ruszkowski, M, Nocek, B, Forlani, G, Dauter, Z.
Deposit date:2015-06-02
Release date:2015-11-11
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:The structure of Medicago truncatula delta (1)-pyrroline-5-carboxylate reductase provides new insights into regulation of proline biosynthesis in plants.
Front Plant Sci, 6, 2015
7CCU
DownloadVisualize
BU of 7ccu by Molmil
Crystal structure of death-associated protein kinase 1 in complex with resveratrol
Descriptor: Death-associated protein kinase 1, RESVERATROL, SULFATE ION
Authors:Yokoyama, T, Suzuki, R, Mizuguchi, M.
Deposit date:2020-06-18
Release date:2021-01-20
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.649 Å)
Cite:Crystal structure of death-associated protein kinase 1 in complex with the dietary compound resveratrol.
Iucrj, 8, 2020
5LXX
DownloadVisualize
BU of 5lxx by Molmil
High-resolution structure of human collapsin response mediator protein 2
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Dihydropyrimidinase-related protein 2, SULFATE ION
Authors:Myllykoski, M, Hensley, K, Kursula, P.
Deposit date:2016-09-23
Release date:2017-01-11
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Collapsin response mediator protein 2: high-resolution crystal structure sheds light on small-molecule binding, post-translational modifications, and conformational flexibility.
Amino Acids, 49, 2017
5LP2
DownloadVisualize
BU of 5lp2 by Molmil
Adhesin domain of the type 1 HopQ of Helicobacter pylori strain G27
Descriptor: HopQ
Authors:Moonens, K, Kruse, T, Gerhard, M, Remaut, H.
Deposit date:2016-08-11
Release date:2016-10-12
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Helicobacter pylori adhesin HopQ engages in a virulence-enhancing interaction with human CEACAMs.
Nat Microbiol, 2, 2016
5LPF
DownloadVisualize
BU of 5lpf by Molmil
Kallikrein-related peptidase 10
Descriptor: Kallikrein-10, SULFATE ION
Authors:Goettig, P, Debela, M, Magdolen, V, Bode, W, Brandstetter, H.
Deposit date:2016-08-12
Release date:2016-10-05
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural basis for the Zn2+ inhibition of the zymogen-like kallikrein-related peptidase 10.
Biol.Chem., 397, 2016
5B1N
DownloadVisualize
BU of 5b1n by Molmil
DHp domain structure of EnvZ from Escherichia coli
Descriptor: Osmolarity sensor protein EnvZ
Authors:Okajima, T, Eguchi, Y, Tochio, N, Inukai, Y, Shimizu, R, Ueda, S, Shinya, S, Kigawa, T, Fukamizo, T, Igarashi, M, Utsumi, R.
Deposit date:2015-12-09
Release date:2016-12-14
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.33 Å)
Cite:Angucycline antibiotic waldiomycin recognizes common structural motif conserved in bacterial histidine kinases
J. Antibiot., 70, 2017
5AYH
DownloadVisualize
BU of 5ayh by Molmil
Structure of the entire dynein stalk region
Descriptor: Cytoplasmic dynein 1 heavy chain 1
Authors:Kurisu, G, Nishikawa, Y, Inatomi, M.
Deposit date:2015-08-21
Release date:2015-12-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3.011 Å)
Cite:Structural Change in the Dynein Stalk Region Associated with Two Different Affinities for the Microtubule
J.Mol.Biol., 428, 2016
5AYT
DownloadVisualize
BU of 5ayt by Molmil
Crystal structure of transthyretin in complex with L6
Descriptor: 2-oxidanyl-6-(phenylcarbonyl)benzo[de]isoquinoline-1,3-dione, Transthyretin
Authors:Yokoyama, T, Mizuguchi, M, Kai, H.
Deposit date:2015-09-03
Release date:2016-01-20
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Structural stabilization of transthyretin by a new compound, 6-benzoyl-2-hydroxy-1H-benzo[de]isoquinoline-1,3(2H)-dione
J. Pharmacol. Sci., 129, 2015
5B22
DownloadVisualize
BU of 5b22 by Molmil
Dimer structure of murine Nectin-3 D1D2
Descriptor: Nectin-3, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Takebe, K, Sangawa, T, Katsutani, T, Narita, H, Suzuki, M.
Deposit date:2015-12-28
Release date:2016-12-28
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.58 Å)
Cite:Dimer structure of murine Nectin-3 D1D2
To Be Published
5LU7
DownloadVisualize
BU of 5lu7 by Molmil
Heptose isomerase GmhA mutant - D61A
Descriptor: 1,2-ETHANEDIOL, 7-O-phosphono-D-glycero-alpha-D-manno-heptopyranose, Phosphoheptose isomerase, ...
Authors:Vivoli, M, Harmer, N.J, Pang, J.
Deposit date:2016-09-08
Release date:2017-12-06
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:A half-site multimeric enzyme achieves its cooperativity without conformational changes.
Sci Rep, 7, 2017
5AZ1
DownloadVisualize
BU of 5az1 by Molmil
Crystal structure of aldo-keto reductase (AKR2E5) complexed with NADPH
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, CALCIUM ION, ...
Authors:Yamamoto, K, Higashiura, A, Suzuki, M, Nakagawa, A.
Deposit date:2015-09-15
Release date:2016-02-10
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural characterization of an aldo-keto reductase (AKR2E5) from the silkworm Bombyx mori
Biochem.Biophys.Res.Commun., 474, 2016
5B2K
DownloadVisualize
BU of 5b2k by Molmil
A crucial role of Cys218 in the stabilization of an unprecedented auto-inhibition form of MAP2K7
Descriptor: Dual specificity mitogen-activated protein kinase kinase 7
Authors:Sogabe, Y, Hashimoto, T, Matsumoto, T, Kirii, Y, Sawa, M, Kinoshita, T.
Deposit date:2016-01-19
Release date:2016-04-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:A crucial role of Cys218 in configuring an unprecedented auto-inhibition form of MAP2K7
Biochem.Biophys.Res.Commun., 473, 2016
2LLJ
DownloadVisualize
BU of 2llj by Molmil
Structure of a bis-naphthalene bound to a thymine-thymine DNA mismatch
Descriptor: 6,22-dioxa-3,9,19,25-tetraazoniapentacyclo[25.5.3.3~11,17~.0~14,37~.0~30,34~]octatriaconta-1(33),11(38),12,14(37),15,17(36),27,29,31,34-decaene, DNA (5'-D(*CP*GP*TP*CP*GP*TP*AP*GP*TP*GP*C)-3'), DNA (5'-D(*GP*CP*AP*CP*TP*TP*CP*GP*AP*CP*G)-3')
Authors:Jourdan, M, Granzhan, A, Guillot, R, Dumy, P, Teulade-Fichou, M.
Deposit date:2011-11-10
Release date:2013-02-20
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Double threading through DNA: NMR structural study of a bis-naphthalene macrocycle bound to a thymine-thymine mismatch.
Nucleic Acids Res., 40, 2012
7CJG
DownloadVisualize
BU of 7cjg by Molmil
Structural and kinetic characterization of Porphyromonas gingivalis glutaminyl cyclase
Descriptor: 5,6-DIMETHYLBENZIMIDAZOLE, GLYCEROL, Glutamine cyclotransferase-related protein, ...
Authors:Ruiz-Carrillo, D, Lamers, S, Feng, Q, Yu, S, Sun, B, Jiang, J, Lukman, M.
Deposit date:2020-07-10
Release date:2021-05-05
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural and kinetic characterization of Porphyromonas gingivalis glutaminyl cyclase.
Biol.Chem., 402, 2021
5M2A
DownloadVisualize
BU of 5m2a by Molmil
Structure of a bacterial light-regulated adenylyl cylcase
Descriptor: Beta subunit of photoactivated adenylyl cyclase, CHLORIDE ION, FLAVIN MONONUCLEOTIDE, ...
Authors:Lindner, R, Hartmann, E, Tarnawski, M, Winkler, A, Frey, D, Reinstein, J, Meinhart, A, Schlichting, I.
Deposit date:2016-10-12
Release date:2017-04-05
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Photoactivation Mechanism of a Bacterial Light-Regulated Adenylyl Cyclase.
J. Mol. Biol., 429, 2017
1TJ1
DownloadVisualize
BU of 1tj1 by Molmil
Crystal structure of E. coli PutA proline dehydrogenase domain (residues 86-669) complexed with L-lactate
Descriptor: (2S)-2-HYDROXYPROPANOIC ACID, Bifunctional putA protein, FLAVIN-ADENINE DINUCLEOTIDE
Authors:Tanner, J.J, Zhang, M, White, T.A, Schuermann, J.P, Baban, B.A, Becker, D.F.
Deposit date:2004-06-03
Release date:2004-10-26
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structures of the Escherichia coli PutA proline dehydrogenase domain in complex with competitive inhibitors
Biochemistry, 43, 2004
5B0U
DownloadVisualize
BU of 5b0u by Molmil
Crystal structure of the mutated 19 kDa protein of Oplophorus luciferase (nanoKAZ)
Descriptor: Oplophorus-luciferin 2-monooxygenase catalytic subunit
Authors:Tomabechi, Y, Ehara, H, Sekine, S.I, Shirouzu, M.
Deposit date:2015-11-04
Release date:2016-01-13
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:Crystal structure of nanoKAZ: The mutated 19 kDa component of Oplophorus luciferase catalyzing the bioluminescent reaction with coelenterazine
Biochem.Biophys.Res.Commun., 470, 2016
5B1J
DownloadVisualize
BU of 5b1j by Molmil
Crystal structure of the electron-transfer complex of copper nitrite reductase with a cupredoxin
Descriptor: Blue copper protein, COPPER (II) ION, Copper-containing nitrite reductase
Authors:Nojiri, M, Koteishi, H, Yoneda, R, Hira, D.
Deposit date:2015-12-04
Release date:2016-11-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structure and Function of Copper Nitrite Reductase
Metalloenzymes in denitrification: Applications and Environmental impacts, 2016
5LZ3
DownloadVisualize
BU of 5lz3 by Molmil
Crystal structure of human ACBD3 GOLD domain in complex with 3A protein of Aichivirus A
Descriptor: 3A, Golgi resident protein GCP60
Authors:Klima, M, Boura, E.
Deposit date:2016-09-29
Release date:2016-12-14
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3 Å)
Cite:Kobuviral Non-structural 3A Proteins Act as Molecular Harnesses to Hijack the Host ACBD3 Protein.
Structure, 25, 2017

225946

數據於2024-10-09公開中

PDB statisticsPDBj update infoContact PDBjnumon