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PDB: 51964 results

6IR9
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BU of 6ir9 by Molmil
RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-1) of the nucleosome
Descriptor: DNA (198-MER), DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, ...
Authors:Ehara, H, Kujirai, T, Fujino, Y, Shirouzu, M, Kurumizaka, H, Sekine, S.
Deposit date:2018-11-12
Release date:2019-02-20
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structural insight into nucleosome transcription by RNA polymerase II with elongation factors.
Science, 363, 2019
6R6N
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BU of 6r6n by Molmil
Recombinantly produced Kusta0087/Kusta0088 Complex, C32M/C101M mutant
Descriptor: HEME C, KustA0088, Small soluble cyt c
Authors:Akram, M, Barends, T.
Deposit date:2019-03-27
Release date:2019-10-02
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:A nitric oxide-binding heterodimeric cytochromeccomplex from the anammox bacteriumKuenenia stuttgartiensisbinds to hydrazine synthase.
J.Biol.Chem., 294, 2019
3DD0
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BU of 3dd0 by Molmil
Use of Carbonic Anhydrase II, IX Active-Site Mimic, for the Purpose of Screening Inhibitors for Possible Anti-Cancer Properties
Descriptor: 6-ethoxy-1,3-benzothiazole-2-sulfonamide, Carbonic anhydrase 2, ZINC ION
Authors:Genis, C, Sippel, K.H, Case, N, Govindasamy, L, Agbandje-Mckenna, M, Mckenna, R.
Deposit date:2008-06-04
Release date:2009-03-03
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Design of a carbonic anhydrase IX active-site mimic to screen inhibitors for possible anticancer properties
Biochemistry, 48, 2009
1HV5
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BU of 1hv5 by Molmil
CRYSTAL STRUCTURE OF THE STROMELYSIN-3 (MMP-11) CATALYTIC DOMAIN COMPLEXED WITH A PHOSPHINIC INHIBITOR
Descriptor: 1-BENZYLOXYCARBONYLAMINO-2-PHENYL-ETHYL)-{2-[1-CARBAMOYL-2-(1H-INDOL-3-YL)-ETHYLCARBAMOYL]-5-PHENYL-PENTYL}-PHOSPHINIC ACID, 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE, CALCIUM ION, ...
Authors:Gall, A.L, Ruff, M, Kannan, R, Cuniasse, P, Yiotakis, A, Dive, V, Rio, M.C, Basset, P, Moras, D.
Deposit date:2001-01-08
Release date:2001-03-28
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure of the stromelysin-3 (MMP-11) catalytic domain complexed with a phosphinic inhibitor mimicking the transition-state.
J.Mol.Biol., 307, 2001
4I29
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BU of 4i29 by Molmil
Binary complex of mouse TdT with ssDNA and Mn++
Descriptor: 5'-D(*AP*AP*(8BA)P*AP*A)-3', DNA nucleotidylexotransferase, MANGANESE (II) ION, ...
Authors:Gouge, J, Delarue, M.
Deposit date:2012-11-21
Release date:2013-07-24
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structures of Intermediates along the Catalytic Cycle of Terminal Deoxynucleotidyltransferase: Dynamical Aspects of the Two-Metal Ion Mechanism.
J.Mol.Biol., 425, 2013
6E16
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BU of 6e16 by Molmil
Ternary structure of c-Myc-TBP-TAF1
Descriptor: Transcription initiation factor TFIID subunit 1,Myc proto-oncogene protein,TATA-box-binding protein
Authors:Wei, Y, Dong, A, Sunnerhagen, M, Penn, L, Tong, Y, Edwards, A.M, Arrowsmith, C.H, Structural Genomics Consortium (SGC)
Deposit date:2018-07-09
Release date:2019-10-02
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Multiple direct interactions of TBP with the MYC oncoprotein.
Nat.Struct.Mol.Biol., 26, 2019
3DFS
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BU of 3dfs by Molmil
Dihydroxyacetone phosphate Schiff base intermediate in D33S mutant fructose-1,6-bisphosphate aldolase from rabbit muscle
Descriptor: 1,3-DIHYDROXYACETONEPHOSPHATE, Fructose-bisphosphate aldolase A
Authors:St-Jean, M, Sygusch, J.
Deposit date:2008-06-12
Release date:2009-04-28
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Charge stabilization and entropy reduction of central lysine residues in fructose-bisphosphate aldolase
Biochemistry, 48, 2009
3P13
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BU of 3p13 by Molmil
Complex Structure of D-ribose Pyranase Sa240 with D-ribose
Descriptor: D-ribose pyranase, beta-D-ribopyranose
Authors:Wu, M, Wang, L, Zang, J.
Deposit date:2010-09-29
Release date:2011-05-25
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Crystal structure of Sa240: A ribose pyranase homolog with partial active site from Staphylococcus aureus
J.Struct.Biol., 174, 2011
6ITF
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BU of 6itf by Molmil
Icosahedral asymmetric unit (iASU) model of the less refined, coarse part of FHV eluted particle
Descriptor: CAPSID PROTEIN BETA
Authors:Banerjee, M, Azad, K.
Deposit date:2018-11-22
Release date:2019-08-28
Last modified:2024-03-27
Method:ELECTRON MICROSCOPY (4.7 Å)
Cite:Structural Dynamics of Nonenveloped Virus Disassembly Intermediates.
J.Virol., 93, 2019
1HZO
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BU of 1hzo by Molmil
STRUCTURE OF CLASS A CEPHALOSPORINASE FROM PROTEUS VULGARIS K1
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, BETA-LACTAMASE
Authors:Nukaga, M, Crichlow, G.V, Kuzin, A.P, Mayama, K, Knox, J.R.
Deposit date:2001-01-25
Release date:2002-04-03
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structure of an extended-spectrum class A beta-lactamase from Proteus vulgaris K1.
J.Mol.Biol., 317, 2002
4I49
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BU of 4i49 by Molmil
Structure of ngNAGS bound with bisubstrate analog CoA-NAG
Descriptor: (2S)-2-({(3S,5R,9R)-1-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9-trihydroxy-8,8-dimethyl-3,5-dioxido-10,14,20-trioxo-2,4,6-trioxa-18-thia-11,15-diaza-3lambda~5~,5lambda~5~-diphosphaicosan-20-yl}amino)pentanedioic acid (non-preferred name), Amino-acid acetyltransferase, SULFATE ION
Authors:Shi, D, Zhao, G, Allewell, N.M, Tuchman, M.
Deposit date:2012-11-27
Release date:2013-01-09
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Structure of the complex of Neisseria gonorrhoeae N-acetyl-l-glutamate synthase with a bound bisubstrate analog.
Biochem.Biophys.Res.Commun., 430, 2013
3DHZ
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BU of 3dhz by Molmil
Apo (iron free) structure of C. ammoniagenes R2 protein
Descriptor: FE (II) ION, Ribonucleotide reductase subunit R2F
Authors:Hogbom, M, Nordlund, P.
Deposit date:2008-06-19
Release date:2008-07-01
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Structural and mutational studies of the carboxylate cluster in Iron-free Ribonucleotide Reductase R2.
Biochemistry, 43, 2004
6E1R
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BU of 6e1r by Molmil
Crystal structure of the Acinetobacter phage vB_ApiP_P1 tailspike protein
Descriptor: CHLORIDE ION, SODIUM ION, Tailspike protein
Authors:Plattner, M, Shneider, M.M, Oliveira, H, Azeredo, J, Leiman, P.G.
Deposit date:2018-07-10
Release date:2019-07-17
Method:X-RAY DIFFRACTION (2.693 Å)
Cite:Crystal structure of the Acinetobacter phage vB_ApiP_P1 tailspike protein
To Be Published
3OP3
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BU of 3op3 by Molmil
Crystal Structure of Cell Division Cycle 25C Protein Isoform A from Homo sapiens
Descriptor: M-phase inducer phosphatase 3, SULFATE ION
Authors:Kim, Y, Weger, A, Hatzos, C, Savitsky, P, Johansson, C, Ball, L, Barr, A, Vollmar, M, Muniz, J, Weigelt, J, Arrowsmith, C.H, Edwards, A, Bountra, C, Gileadi, O, von Delft, F, Knapp, S, Joachimiak, A, Structural Genomics Consortium (SGC)
Deposit date:2010-08-31
Release date:2010-09-29
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.63 Å)
Cite:Crystal Structure of Cell Division Cycle 25C Protein Isoform A from Homo sapiens
TO BE PUBLISHED
4MLS
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BU of 4mls by Molmil
Crystal structure of the SpyTag and SpyCatcher-deltaN1 complex
Descriptor: Fibronectin binding protein, SpyTag
Authors:Li, L, Fierer, J.O, Rapoport, T.A, Howarth, M.
Deposit date:2013-09-06
Release date:2013-11-13
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.984 Å)
Cite:Structural Analysis and Optimization of the Covalent Association between SpyCatcher and a Peptide Tag.
J.Mol.Biol., 426, 2014
3OP9
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BU of 3op9 by Molmil
Crystal structure of transcriptional regulator from Listeria innocua
Descriptor: CHLORIDE ION, Pli0006 protein
Authors:Michalska, K, Li, H, Gu, M, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2010-08-31
Release date:2010-09-15
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.898 Å)
Cite:Crystal structure of transcriptional regulator from Listeria innocua
To be Published
4MLZ
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BU of 4mlz by Molmil
Crystal structure of periplasmic binding protein from Jonesia denitrificans
Descriptor: CALCIUM ION, POTASSIUM ION, Periplasmic binding protein
Authors:Chang, C, Chhor, G, Endres, M, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2013-09-06
Release date:2013-09-18
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:Crystal structure of periplasmic binding protein from Jonesia denitrificans
To be Published
6QZ0
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BU of 6qz0 by Molmil
The cryo-EM structure of the head of the genome empited bacteriophage phi29
Descriptor: Capsid fiber protein, Major capsid protein
Authors:Xu, J, Wang, D, Gui, M, Xiang, Y.
Deposit date:2019-03-10
Release date:2019-06-12
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structural assembly of the tailed bacteriophage φ29.
Nat Commun, 10, 2019
6I1K
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BU of 6i1k by Molmil
Crystal structure of catalytically inactive FnCas12a in complex with a crRNA guide and a dsDNA target
Descriptor: 1,2-ETHANEDIOL, CRISPR-associated endonuclease Cas12a, DNA non-target strand (33-MER), ...
Authors:Jinek, M, Swarts, D.C.
Deposit date:2018-10-29
Release date:2019-01-23
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Mechanistic Insights into the cis- and trans-Acting DNase Activities of Cas12a.
Mol. Cell, 73, 2019
6I19
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BU of 6i19 by Molmil
Crystal structure of Chlamydomonas reinhardtii thioredoxin h1
Descriptor: Thioredoxin H-type
Authors:Lemaire, S.D, Tedesco, D, Crozet, P, Michelet, L, Fermani, S, Zaffagnini, M, Henri, J.
Deposit date:2018-10-27
Release date:2018-12-05
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.378 Å)
Cite:Crystal Structure of Chloroplastic Thioredoxin f2 fromChlamydomonas reinhardtiiReveals Distinct Surface Properties.
Antioxidants (Basel), 7, 2018
6RB9
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BU of 6rb9 by Molmil
The pore structure of Clostridium perfringens epsilon toxin
Descriptor: Epsilon-toxin type B
Authors:Savva, C.G, Clark, A.R, Naylor, C.E, Popoff, M.R, Moss, D.S, Basak, A.K, Titball, R.W, Bokori-Brown, M.
Deposit date:2019-04-09
Release date:2019-06-19
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:The pore structure of Clostridium perfringens epsilon toxin.
Nat Commun, 10, 2019
6I2S
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BU of 6i2s by Molmil
Crystal structure of the SucA domain of Mycobacterium smegmatis KGD (R802A) in complex with GarA, following 2-oxoglutarate soak
Descriptor: (4S)-4-{3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-5-(2-{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-4-methyl-1,3lambda~5~-thiazol-2-yl}-4-hydroxybutanoic acid, CALCIUM ION, Glycogen accumulation regulator GarA, ...
Authors:Wagner, T, Bellinzoni, M, Alzari, P.M.
Deposit date:2018-11-01
Release date:2019-05-22
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structural insights into the functional versatility of an FHA domain protein in mycobacterial signaling.
Sci.Signal., 12, 2019
3P4E
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BU of 3p4e by Molmil
Phosphoribosylformylglycinamidine cyclo-ligase from Vibrio cholerae
Descriptor: 1,2-ETHANEDIOL, ADENOSINE MONOPHOSPHATE, CITRIC ACID, ...
Authors:Osipiuk, J, Zhou, M, Papazisi, L, Anderson, W.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2010-10-06
Release date:2010-10-20
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Phosphoribosylformylglycinamidine cyclo-ligase from Vibrio cholerae.
To be Published
4I2D
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BU of 4i2d by Molmil
Binary complex of mouse TdT with AMPcPP
Descriptor: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, DNA nucleotidylexotransferase, MAGNESIUM ION, ...
Authors:Gouge, J, Delarue, M.
Deposit date:2012-11-21
Release date:2013-07-24
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structures of Intermediates along the Catalytic Cycle of Terminal Deoxynucleotidyltransferase: Dynamical Aspects of the Two-Metal Ion Mechanism.
J.Mol.Biol., 425, 2013
6RBT
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BU of 6rbt by Molmil
Crystal structure of NAD kinase 1 from Listeria monocytogenes in complexe with an adenine derivative
Descriptor: 8-bromanyl-9-(4-bromanylbutyl)purin-6-amine, CITRIC ACID, NAD kinase 1
Authors:Gelin, M, Labesse, G.
Deposit date:2019-04-11
Release date:2020-02-19
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:From Substrate to Fragments to Inhibitor ActiveIn VivoagainstStaphylococcus aureus.
Acs Infect Dis., 6, 2020

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