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PDB: 51964 results

1KWS
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CRYSTAL STRUCTURE OF BETA1,3-GLUCURONYLTRANSFERASE I IN COMPLEX WITH THE ACTIVE UDP-GLCUA DONOR
Descriptor: BETA-1,3-GLUCURONYLTRANSFERASE 3, MANGANESE (II) ION, URIDINE-5'-DIPHOSPHATE-GLUCURONIC ACID
Authors:Pedersen, L.C, Darden, T.A, Negishi, M.
Deposit date:2002-01-30
Release date:2002-06-19
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of beta 1,3-glucuronyltransferase I in complex with active donor substrate UDP-GlcUA.
J.Biol.Chem., 277, 2002
2YWR
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Crystal structure of GAR transformylase from Aquifex aeolicus
Descriptor: COBALT (II) ION, MAGNESIUM ION, Phosphoribosylglycinamide formyltransferase
Authors:Kanagawa, M, Baba, S, Kuramitsu, S, Yokoyama, S, Kawai, G, Sampei, G, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-23
Release date:2007-10-23
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Structures and reaction mechanisms of the two related enzymes, PurN and PurU.
J.Biochem., 154, 2013
5L2L
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Nab2 Zn fingers 5-7 bound to A11G RNA
Descriptor: Nab2p, RNA (5'-R(*AP*AP*AP*AP*AP*AP*AP*AP*AP*G)-3'), ZINC ION
Authors:Stewart, M, Aibara, S.
Deposit date:2016-08-02
Release date:2016-12-21
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structural basis for the dimerization of Nab2 generated by RNA binding provides insight into its contribution to both poly(A) tail length determination and transcript compaction in Saccharomyces cerevisiae.
Nucleic Acids Res., 45, 2017
5L93
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An atomic model of HIV-1 CA-SP1 reveals structures regulating assembly and maturation
Descriptor: Capsid protein p24
Authors:Schur, F.K.M, Obr, M, Hagen, W.J.H, Wan, W, Arjen, J.J, Kirkpatrick, J.M, Sachse, C, Kraeusslich, H.-G, Briggs, J.A.G.
Deposit date:2016-06-09
Release date:2016-07-13
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.9 Å)
Cite:An atomic model of HIV-1 capsid-SP1 reveals structures regulating assembly and maturation.
Science, 353, 2016
4QGK
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Structure of the Human Sjogren Larsson Syndrome enzyme fatty aldehyde dehydrogenase (FALDH)
Descriptor: Fatty aldehyde dehydrogenase
Authors:Zander, U, Keller, M, Marquez, J.A.
Deposit date:2014-05-23
Release date:2014-07-30
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:A gatekeeper helix determines the substrate specificity of Sjogren-Larsson Syndrome enzyme fatty aldehyde dehydrogenase.
Nat Commun, 5, 2014
5L3F
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LSD1-CoREST1 in complex with polymyxin B
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Lysine-specific histone demethylase 1A, Polmyxin B, ...
Authors:Speranzini, V, Rotili, D, Ciossani, G, Pilotto, S, Forgione, M, Lucidi, A, Forneris, F, Velankar, S, Mai, A, Mattevi, A.
Deposit date:2016-04-10
Release date:2016-09-21
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Polymyxins and quinazolines are LSD1/KDM1A inhibitors with unusual structural features.
Sci Adv, 2, 2016
2YXZ
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Crystal structure of tt0281 from Thermus thermophilus HB8
Descriptor: Thiamin-monophosphate kinase
Authors:Goto, M.
Deposit date:2007-04-27
Release date:2008-04-29
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of tt0281 from Thermus thermophilus HB8
to be published
5L3T
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BU of 5l3t by Molmil
Structure of the Saccharomyces cerevisiae TREX-2 complex
Descriptor: 26S proteasome complex subunit SEM1, Nuclear mRNA export protein SAC3, Nuclear mRNA export protein THP1, ...
Authors:Stewart, M, Aibara, S.
Deposit date:2016-05-24
Release date:2016-07-27
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (4.927 Å)
Cite:The Sac3 TPR-like region in the Saccharomyces cerevisiae TREX-2 complex is more extensive but independent of the CID region.
J. Struct. Biol., 195, 2016
5L4L
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polyketide ketoreductase SimC7 - ternary complex with NADP+ and 7-oxo-SD8
Descriptor: 7-oxo-simocyclinone D8, GLYCEROL, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Schafer, M, Stevenson, C.E.M, Wilkinson, B, Lawson, D.M, Buttner, M.J.
Deposit date:2016-05-25
Release date:2016-10-05
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Substrate-Assisted Catalysis in Polyketide Reduction Proceeds via a Phenolate Intermediate.
Cell Chem Biol, 23, 2016
2Z0V
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Crystal structure of BAR domain of Endophilin-III
Descriptor: SH3-containing GRB2-like protein 3
Authors:Murayama, K, Kato-Murayama, M, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-05-07
Release date:2008-05-13
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Crystal structure of BAR domain of Endophilin-III
To be Published
5I27
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Crystal structure of non-myristoylated MMTV matrix protein
Descriptor: Matrix protein
Authors:Brynda, J, Dostal, J, Zabransky, A, Dolezal, M.
Deposit date:2016-02-08
Release date:2017-06-28
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystal structure non-myristoylated MMTV matrix protein
To Be Published
5L5B
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Yeast 20S proteasome with human beta5i (1-138) and human beta6 (97-111; 118-133)
Descriptor: CHLORIDE ION, MAGNESIUM ION, Probable proteasome subunit alpha type-7, ...
Authors:Groll, M, Huber, E.M.
Deposit date:2016-05-28
Release date:2016-11-09
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:A humanized yeast proteasome identifies unique binding modes of inhibitors for the immunosubunit beta 5i.
EMBO J., 35, 2016
5KRV
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1-deoxy-D-xylulose 5-phosphate reductoisomerase from Vibrio vulnificus in complex Arginine
Descriptor: 1,2-ETHANEDIOL, 1-deoxy-D-xylulose 5-phosphate reductoisomerase, ARGININE, ...
Authors:Ussin, N, Abdulsalam, R.W, Magee, P, Chruszcz, M.
Deposit date:2016-07-07
Release date:2017-07-12
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural characterization of 1-deoxy-D-xylulose 5-phosphate Reductoisomerase from Vibrio vulnificus.
Biochim Biophys Acta Proteins Proteom, 1866, 2018
5I39
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High resolution structure of L-amino acid deaminase from Proteus vulgaris with the deletion of the specific insertion sequence
Descriptor: 1,2-ETHANEDIOL, FLAVIN-ADENINE DINUCLEOTIDE, L-amino acid deaminase
Authors:Zhou, H, Ju, Y, Niu, L, Teng, M.
Deposit date:2016-02-10
Release date:2016-08-03
Last modified:2016-08-24
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Crystal structure of a membrane-bound l-amino acid deaminase from Proteus vulgaris
J.Struct.Biol., 195, 2016
5L5W
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Yeast 20S proteasome with human beta5c (1-138) and human beta6 (97-111; 118-133)
Descriptor: CHLORIDE ION, MAGNESIUM ION, Probable proteasome subunit alpha type-7, ...
Authors:Groll, M, Huber, E.M.
Deposit date:2016-05-28
Release date:2016-11-09
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:A humanized yeast proteasome identifies unique binding modes of inhibitors for the immunosubunit beta 5i.
EMBO J., 35, 2016
2YQ4
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BU of 2yq4 by Molmil
Crystal Structure of D-isomer specific 2-hydroxyacid dehydrogenase from Lactobacillus delbrueckii ssp. bulgaricus
Descriptor: D-ISOMER SPECIFIC 2-HYDROXYACID DEHYDROGENASE
Authors:Holton, S.J, Anandhakrishnan, M, Geerlof, A, Wilmanns, M.
Deposit date:2012-11-05
Release date:2012-11-21
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (3.45 Å)
Cite:Structural Characterization of D-Isomer Specific 2-Hydroxyacid Dehydrogenase from Lactobacillus Delbrueckii Ssp. Bulgaricus
J.Struct.Biol., 181, 2013
5L6E
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Crystal structure of the human METTL3-METTL14 complex bound to SAM
Descriptor: ACETATE ION, MAGNESIUM ION, N6-adenosine-methyltransferase 70 kDa subunit, ...
Authors:Sledz, P, Jinek, M.
Deposit date:2016-05-29
Release date:2016-10-12
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.901 Å)
Cite:Structural insights into the molecular mechanism of the m(6)A writer complex.
Elife, 5, 2016
3TSQ
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BU of 3tsq by Molmil
Crystal structure of E. coli HypF with ATP and Carbamoyl phosphate
Descriptor: 5'-O-[(S)-(carbamoyloxy)(hydroxy)phosphoryl]adenosine, MAGNESIUM ION, Transcriptional regulatory protein, ...
Authors:Petkun, S, Shi, R, Li, Y, Cygler, M.
Deposit date:2011-09-13
Release date:2011-12-28
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of Hydrogenase Maturation Protein HypF with Reaction Intermediates Shows Two Active Sites.
Structure, 19, 2011
5I4K
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BU of 5i4k by Molmil
Metal ABC transporter from Listeria monocytogenes with manganese
Descriptor: CHLORIDE ION, MANGANESE (II) ION, Manganese-binding lipoprotein MntA
Authors:Osipiuk, J, Zhou, M, Grimshaw, S, Anderson, W.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2016-02-12
Release date:2016-02-24
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Metal ABC transporter from Listeria monocytogenes with manganese
to be published
5IEH
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BU of 5ieh by Molmil
Structure of HLA-B*40:02 in complex with the phosphorylated endogenous peptide REF(p)SKEPEL
Descriptor: 1,2-ETHANEDIOL, Beta-2-microglobulin, HLA class I histocompatibility antigen, ...
Authors:Alpizar, A, Marcilla, M, Santiago, C.
Deposit date:2016-02-25
Release date:2016-12-07
Last modified:2019-10-16
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure of HLA-B*40:02 in complex with the phosphorilated endogenous peptide REFpSKEPEL
To Be Published
5I6J
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BU of 5i6j by Molmil
Crystal Structure of SRGAP2 F-BARx
Descriptor: SLIT-ROBO Rho GTPase-activating protein 2
Authors:Sporny, M, Guez-Haddad, J, Isupov, M.N, Opatowsky, Y.
Deposit date:2016-02-16
Release date:2017-03-08
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural History of Human SRGAP2 Proteins.
Mol. Biol. Evol., 34, 2017
4JM5
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Crystal structure of Cytochrome C Peroxidase W191G-Gateless in complex with 2-Amino-5-methylthiazole
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 2-AMINO-5-METHYLTHIAZOLE, Cytochrome c peroxidase, ...
Authors:Boyce, S.E, Fischer, M, Fish, I, Shoichet, B.K.
Deposit date:2013-03-13
Release date:2013-05-01
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.26 Å)
Cite:Blind prediction of charged ligand binding affinities in a model binding site.
J.Mol.Biol., 425, 2013
5KWL
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expanded poliovirus in complex with VHH 10E
Descriptor: VHH 10E, VP1, VP2, ...
Authors:Strauss, M, Schotte, L, Filman, D.J, Hogle, J.M.
Deposit date:2016-07-18
Release date:2016-11-02
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (4.5 Å)
Cite:Cryo-electron Microscopy Structures of Expanded Poliovirus with VHHs Sample the Conformational Repertoire of the Expanded State.
J. Virol., 91, 2017
1L7Z
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Crystal structure of Ca2+/Calmodulin complexed with myristoylated CAP-23/NAP-22 peptide
Descriptor: CALCIUM ION, CALMODULIN, CAP-23/NAP-22, ...
Authors:Matsubara, M, Nakatsu, T, Yamauchi, E, Kato, H, Taniguchi, H, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-03-18
Release date:2003-09-16
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of a myristoylated CAP-23/NAP-22 N-terminal domain complexed with Ca2+/calmodulin
EMBO J., 23, 2004
5KWE
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Thermostable mutant of halohydrin dehalogenase HheC - C153N
Descriptor: CHLORIDE ION, Halohydrin dehalogenase, SODIUM ION
Authors:Dal Lago, M, Terwisschavvan Scheltinga, A.C.
Deposit date:2016-07-18
Release date:2017-01-11
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.684 Å)
Cite:A robust cosolvent-compatible halohydrin dehalogenase by computational library design.
Protein Eng. Des. Sel., 30, 2017

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PDB entries from 2024-10-09

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