Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 234 results

3DD7
DownloadVisualize
BU of 3dd7 by Molmil
Structure of DocH66Y in complex with the C-terminal domain of Phd
Descriptor: BROMIDE ION, Death on curing protein, Prevent host death protein
Authors:Garcia-Pino, A, Loris, R.
Deposit date:2008-06-05
Release date:2008-09-16
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Doc of Prophage P1 Is Inhibited by Its Antitoxin Partner Phd through Fold Complementation
J.Biol.Chem., 283, 2008
1LUL
DownloadVisualize
BU of 1lul by Molmil
DB58, A LEGUME LECTIN FROM DOLICHOS BIFLORUS
Descriptor: CALCIUM ION, LECTIN DB58, MANGANESE (II) ION
Authors:Hamelryck, T.W, Bouckaert, J, Dao-Thi, M.H, Wyns, L, Etzler, M, Loris, R.
Deposit date:1998-06-30
Release date:1998-12-30
Last modified:2024-05-22
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Carbohydrate binding, quaternary structure and a novel hydrophobic binding site in two legume lectin oligomers from Dolichos biflorus.
J.Mol.Biol., 286, 1999
7R5A
DownloadVisualize
BU of 7r5a by Molmil
Vibrio cholera ParD2:ParE2 antitoxin:toxin complex
Descriptor: Antitoxin ParD, Toxin
Authors:Garcia-Rodriguez, G, Loris, R.
Deposit date:2022-02-10
Release date:2022-04-27
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Toxin:antitoxin ratio sensing autoregulation of the Vibrio cholerae parDE2 module.
Sci Adv, 10, 2024
7NKV
DownloadVisualize
BU of 7nkv by Molmil
PaaR2 regulator N-terminal domain
Descriptor: Phage repressor protein CI
Authors:Prolic-Kalinsek, M, Loris, R, Volkov, A.N.
Deposit date:2021-02-19
Release date:2022-03-02
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Regulation of the Escherichia coli paaR2-paaA2-ParD2 toxin-antitoxin system
To Be Published
3TCJ
DownloadVisualize
BU of 3tcj by Molmil
CcdB dimer from V. fisheri in complex with one C-terminal domain of F-plasmid CcdA
Descriptor: ACETATE ION, CcdB, Protein CcdA
Authors:De Jonge, N, Loris, R.
Deposit date:2011-08-09
Release date:2012-08-15
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Energetic basis of uncoupling folding from binding for an intrinsically disordered protein.
J.Am.Chem.Soc., 135, 2013
4QO1
DownloadVisualize
BU of 4qo1 by Molmil
p53 DNA binding domain in complex with Nb139
Descriptor: Cellular tumor antigen p53, Nb139 Nanobody against the DNA-binding domain of p53, ZINC ION
Authors:De Gieter, S, Bethuyne, J, Gettemans, J, Garcia-Pino, A, Loris, R.
Deposit date:2014-06-19
Release date:2014-10-29
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.924 Å)
Cite:A nanobody modulates the p53 transcriptional program without perturbing its functional architecture.
Nucleic Acids Res., 42, 2014
6F8S
DownloadVisualize
BU of 6f8s by Molmil
Toxin-Antitoxin complex GraTA
Descriptor: DI(HYDROXYETHYL)ETHER, Putative Killer protein, SULFATE ION, ...
Authors:Talavera, A, Loris, R.
Deposit date:2017-12-13
Release date:2018-07-11
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:A dual role in regulation and toxicity for the disordered N-terminus of the toxin GraT.
Nat Commun, 10, 2019
6F8H
DownloadVisualize
BU of 6f8h by Molmil
antitoxin GraA
Descriptor: XRE family transcriptional regulator
Authors:Talavera, A, Loris, R.
Deposit date:2017-12-13
Release date:2019-01-30
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.002 Å)
Cite:A dual role in regulation and toxicity for the disordered N-terminus of the toxin GraT.
Nat Commun, 10, 2019
6FIX
DownloadVisualize
BU of 6fix by Molmil
antitoxin GraA in complex with its operator
Descriptor: DNA (30-MER), XRE family transcriptional regulator
Authors:Talavera, A, Loris, R.
Deposit date:2018-01-19
Release date:2019-01-30
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:A dual role in regulation and toxicity for the disordered N-terminus of the toxin GraT.
Nat Commun, 10, 2019
4MZP
DownloadVisualize
BU of 4mzp by Molmil
MazF from S. aureus crystal form III, C2221, 2.7 A
Descriptor: MazF mRNA interferase
Authors:Zorzini, V, Loris, R, van Nuland, N.A.J, Cheung, A.
Deposit date:2013-09-30
Release date:2014-05-21
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.702 Å)
Cite:Structural and biophysical characterization of Staphylococcus aureus SaMazF shows conservation of functional dynamics.
Nucleic Acids Res., 42, 2014
4MZM
DownloadVisualize
BU of 4mzm by Molmil
MazF from S. aureus crystal form I, P212121, 2.1 A
Descriptor: mRNA interferase MazF
Authors:Zorzini, V, Loris, R, van Nuland, N.A.J, Cheung, A.
Deposit date:2013-09-30
Release date:2014-05-28
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structural and biophysical characterization of Staphylococcus aureus SaMazF shows conservation of functional dynamics.
Nucleic Acids Res., 42, 2014
4MZT
DownloadVisualize
BU of 4mzt by Molmil
MazF from S. aureus crystal form II, C2221, 2.3 A
Descriptor: MazF mRNA interferase
Authors:Zorzini, V, Loris, R, van Nuland, N.A.J, Cheung, A.
Deposit date:2013-09-30
Release date:2014-05-21
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.303 Å)
Cite:Structural and biophysical characterization of Staphylococcus aureus SaMazF shows conservation of functional dynamics.
Nucleic Acids Res., 42, 2014
3ZBE
DownloadVisualize
BU of 3zbe by Molmil
E. coli O157 ParE2-associated antitoxin 2 (PaaA2)
Descriptor: PAAA2
Authors:Sterckx, Y.G.J, Van Nuland, N.A.J, Vranken, W.F, Loris, R.
Deposit date:2012-11-08
Release date:2014-01-15
Last modified:2024-01-31
Method:SOLUTION NMR
Cite:Small-Angle X-Ray Scattering- and Nuclear Magnetic Resonance-Derived Conformational Ensemble of the Highly Flexible Antitoxin Paaa2.
Structure, 22, 2014
8OJQ
DownloadVisualize
BU of 8ojq by Molmil
Arabidopsis thaliana Phosphoenolpyruvate carboxylase PPC1 T778 mutant with bound phosphate
Descriptor: PHOSPHATE ION, Phosphoenolpyruvate carboxylase 1
Authors:Haesaerts, S, Loris, R, Larsen, P.
Deposit date:2023-03-24
Release date:2024-04-03
Method:X-RAY DIFFRACTION (3.04938388 Å)
Cite:Amino acid changes that deregulate PHOSPHOENOLPYRUVATE CARBOXYLASE in plants
To Be Published
8OJ9
DownloadVisualize
BU of 8oj9 by Molmil
Arabidopsis thaliana Phosphoenolpyruvate carboxylase PPC1 free form
Descriptor: Phosphoenolpyruvate carboxylase 1
Authors:Haesaerts, S, Loris, R, Larsen, P.B.
Deposit date:2023-03-24
Release date:2023-04-12
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (3.246383 Å)
Cite:Amino acid changes that deregulate PHOSPHOENOLPYRUVATE CARBOXYLASE in plants
To Be Published
8OJE
DownloadVisualize
BU of 8oje by Molmil
Arabidopsis thaliana Phosphoenolpyruvate carboxylase PPC1 in complex with L-malate
Descriptor: (2S)-2-hydroxybutanedioic acid, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Haesaerts, S, Loris, R, Larsen, P.B.
Deposit date:2023-03-24
Release date:2023-05-31
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.142399 Å)
Cite:Amino acid changes that deregulate PHOSPHOENOLPYRUVATE CARBOXYLASE in plants
To Be Published
8OJF
DownloadVisualize
BU of 8ojf by Molmil
Arabidopsis thaliana Phosphoenolpyruvate carboxylase PPC1 with bound phosphate
Descriptor: CHLORIDE ION, PHOSPHATE ION, Phosphoenolpyruvate carboxylase 1
Authors:Haesaerts, S, Loris, R, Larsen, P.B.
Deposit date:2023-03-24
Release date:2023-05-31
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (3.03683758 Å)
Cite:Amino acid changes that deregulate PHOSPHOENOLPYRUVATE CARBOXYLASE in plants
To Be Published
2Z70
DownloadVisualize
BU of 2z70 by Molmil
E.coli RNase 1 in complex with d(CGCGATCGCG)
Descriptor: CALCIUM ION, DNA (5'-D(*DCP*DGP*DCP*DGP*DAP*DTP*DCP*DGP*DCP*DG)-3'), Ribonuclease I
Authors:Martinez-Rodriguez, S, Loris, R, Messens, J.
Deposit date:2007-08-09
Release date:2008-06-24
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Nonspecific base recognition mediated by water bridges and hydrophobic stacking in ribonuclease I from Escherichia coli
Protein Sci., 17, 2008
8BT1
DownloadVisualize
BU of 8bt1 by Molmil
YdaT transcription regulator (CII functional analog)
Descriptor: CHLORIDE ION, GLYCEROL, SULFATE ION, ...
Authors:Prolic-Kalinsek, M, Loris, R.
Deposit date:2022-11-27
Release date:2023-02-22
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.39788437 Å)
Cite:Structural basis of DNA binding by YdaT, a functional equivalent of the CII repressor in the cryptic prophage CP-933P from Escherichia coli O157:H7.
Acta Crystallogr D Struct Biol, 79, 2023
8C7K
DownloadVisualize
BU of 8c7k by Molmil
YdaS from E. coli O157:H7 cryptic prophage CP-933P
Descriptor: Phage antirepressor protein Cro
Authors:Prolic-Kalinsek, M, Volkov, A.N, Loris, R.
Deposit date:2023-01-16
Release date:2023-01-25
Last modified:2024-06-19
Method:SOLUTION NMR
Cite:Structural basis of DNA binding by YdaT, a functional equivalent of the CII repressor in the cryptic prophage CP-933P from Escherichia coli O157:H7.
Acta Crystallogr D Struct Biol, 79, 2023
4GC2
DownloadVisualize
BU of 4gc2 by Molmil
Crystal structure of the bacteriocin LLPA from pseudomonas sp. in complex with GlcNAc beta(1-2)Man alpha(1-3)[GlcNAc beta(1-2)Man alpha(1-6)]Man
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose, Putidacin L1
Authors:Garcia-Pino, A, Loris, R.
Deposit date:2012-07-29
Release date:2013-04-10
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.1201 Å)
Cite:Structural Determinants for Activity and Specificity of the Bacterial Toxin LlpA.
Plos Pathog., 9, 2013
4GC1
DownloadVisualize
BU of 4gc1 by Molmil
Crystal structure of the bacteriocin LLPA from pseudomonas sp. in complex with Man alpha(1-2)Man
Descriptor: Putidacin L1, alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose
Authors:Garcia-Pino, A, Loris, R.
Deposit date:2012-07-29
Release date:2013-04-10
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.0801 Å)
Cite:Structural Determinants for Activity and Specificity of the Bacterial Toxin LlpA.
Plos Pathog., 9, 2013
4HOH
DownloadVisualize
BU of 4hoh by Molmil
RIBONUCLEASE T1 (THR93ALA MUTANT) COMPLEXED WITH 2'GMP
Descriptor: CALCIUM ION, GUANOSINE-2'-MONOPHOSPHATE, PROTEIN (RIBONUCLEASE T1)
Authors:Langhorst, U, Loris, R, Denisov, V.P, Doumen, J, Roose, P, Maes, D, Halle, B, Steyaert, J.
Deposit date:1998-09-14
Release date:1998-09-23
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Dissection of the structural and functional role of a conserved hydration site in RNase T1.
Protein Sci., 8, 1999
4ELY
DownloadVisualize
BU of 4ely by Molmil
CCDBVFI:GYRA14EC
Descriptor: CHLORIDE ION, CcdB, DNA gyrase subunit A, ...
Authors:De Jonge, N, Simic, R, Buts, L, Haesaerts, S, Roelants, K, Garcia-Pino, A, Sterckx, Y, De Greve, H, Lah, J, Loris, R.
Deposit date:2012-04-11
Release date:2012-05-30
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.932 Å)
Cite:Alternative interactions define gyrase specificity in the CcdB family.
Mol.Microbiol., 84, 2012
5J9I
DownloadVisualize
BU of 5j9i by Molmil
Crystal structure of the HigA2 antitoxin C-terminal domain
Descriptor: Antitoxin igA-2
Authors:Hadzi, S, Loris, R.
Deposit date:2016-04-10
Release date:2017-04-05
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.797 Å)
Cite:Ribosome-dependent Vibrio cholerae mRNAse HigB2 is regulated by a beta-strand sliding mechanism.
Nucleic Acids Res., 45, 2017

222624

数据于2024-07-17公开中

PDB statisticsPDBj update infoContact PDBjnumon