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PDB: 101 results

4E5B
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BU of 4e5b by Molmil
Structure of p38a MAP kinase without BOG
Descriptor: Mitogen-activated protein kinase 14
Authors:Livnah, O, Eisenberg-Domovich, Y, Tzarum, N.
Deposit date:2012-03-14
Release date:2012-10-31
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:Lipid Molecules Induce p38 alpha Activation via a Novel Molecular Switch.
J.Mol.Biol., 424, 2012
6QDI
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BU of 6qdi by Molmil
anti-sigma factor domain-containing protein from Clostridium clariflavum
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, PA14 domain-containing protein
Authors:Voronov, M, Bayer, E.A, Livnah, O.
Deposit date:2019-01-01
Release date:2019-06-12
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.13 Å)
Cite:Distinctive ligand-binding specificities of tandem PA14 biomass-sensory elements from Clostridium thermocellum and Clostridium clariflavum.
Proteins, 87, 2019
6QE7
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BU of 6qe7 by Molmil
anti-sigma factor domain-containing protein
Descriptor: Anti-sigma-I factor RsgI3, CALCIUM ION
Authors:Voronov, M, Livnah, O, Bayer, E.A.
Deposit date:2019-01-07
Release date:2019-06-12
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:Distinctive ligand-binding specificities of tandem PA14 biomass-sensory elements from Clostridium thermocellum and Clostridium clariflavum.
Proteins, 87, 2019
1RFK
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BU of 1rfk by Molmil
Crystal Structure of 2Fe2S Ferredoxin from Thermophilic Cyanobacterium Mastigocladus Laminosus
Descriptor: FE2/S2 (INORGANIC) CLUSTER, Ferredoxin
Authors:Fish, A, Nechushtai, R, Livnah, O.
Deposit date:2003-11-10
Release date:2005-04-12
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Structural basis for the thermostability of ferredoxin from the cyanobacterium Mastigocladus laminosus.
J.Mol.Biol., 350, 2005
1RXH
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BU of 1rxh by Molmil
Crystal structure of streptavidin mutant L124R (M1) complexed with biotinyl p-nitroanilide (BNI)
Descriptor: 5-(2-OXO-HEXAHYDRO-THIENO[3,4-D]IMIDAZOL-6-YL)-PENTANOIC ACID (4-NITRO-PHENYL)-AMIDE, Streptavidin
Authors:Eisenberg-Domovich, Y, Pazy, Y, Nir, O, Raboy, B, Bayer, E.A, Wilchek, M, Livnah, O.
Deposit date:2003-12-18
Release date:2004-05-11
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural elements responsible for conversion of streptavidin to a pseudoenzyme
Proc.Natl.Acad.Sci.USA, 101, 2004
1RXK
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crystal structure of streptavidin mutant (M3) a combination of M1+M2
Descriptor: 5-(2-OXO-HEXAHYDRO-THIENO[3,4-D]IMIDAZOL-6-YL)-PENTANOIC ACID (4-NITRO-PHENYL)-AMIDE, Streptavidin
Authors:Eisenberg-Domovich, Y, Pazy, Y, Nir, O, Raboy, B, Bayer, E.A, Wilchek, M, Livnah, O.
Deposit date:2003-12-18
Release date:2004-05-11
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural elements responsible for conversion of streptavidin to a pseudoenzyme.
Proc.Natl.Acad.Sci.USA, 101, 2004
1RXJ
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BU of 1rxj by Molmil
Crystal structure of streptavidin mutant (M2) where the L3,4 loop was replace by that of avidin
Descriptor: 5-(2-OXO-HEXAHYDRO-THIENO[3,4-D]IMIDAZOL-6-YL)-PENTANOIC ACID (4-NITRO-PHENYL)-AMIDE, Streptavidin
Authors:Eisenberg-Domovich, Y, Pazy, Y, Nir, O, Raboy, B, Bayer, E.A, Wilchek, M, Livnah, O.
Deposit date:2003-12-18
Release date:2004-05-11
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.14 Å)
Cite:Structural elements responsible for conversion of streptavidin to a pseudoenzyme
Proc.Natl.Acad.Sci.USA, 101, 2004
4OOA
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BU of 4ooa by Molmil
CRYSTAL STRUCTURE of NAF1 (MINER1): H114C THE REDOX-ACTIVE 2FE-2S PROTEIN
Descriptor: CDGSH iron-sulfur domain-containing protein 2, FE2/S2 (INORGANIC) CLUSTER
Authors:Tamir, S, Eisenberg-Domovich, Y, Conlan, A.R, Stofleth, J.T, Lipper, C.H, Paddock, M.L, Mittler, R, Jennings, P.A, Livnah, O, Nechushtai, R.
Deposit date:2014-01-31
Release date:2014-07-02
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:A point mutation in the [2Fe-2S] cluster binding region of the NAF-1 protein (H114C) dramatically hinders the cluster donor properties.
Acta Crystallogr.,Sect.D, 70, 2014
4OO7
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THE 1.55A CRYSTAL STRUCTURE of NAF1 (MINER1): THE REDOX-ACTIVE 2FE-2S PROTEIN
Descriptor: CDGSH iron-sulfur domain-containing protein 2, FE2/S2 (INORGANIC) CLUSTER
Authors:Tamir, S, Eisenberg-Domovich, Y, Colman, A.R, Stofleth, J.T, Lipper, C.H, Paddock, M.L, Jenning, P.A, Livnah, O, Nechushtai, R.
Deposit date:2014-01-31
Release date:2014-07-02
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:A point mutation in the [2Fe-2S] cluster binding region of the NAF-1 protein (H114C) dramatically hinders the cluster donor properties.
Acta Crystallogr.,Sect.D, 70, 2014
1Y53
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BU of 1y53 by Molmil
Crystal structure of bacterial expressed avidin related protein 4 (AVR4) C122S
Descriptor: Avidin-related protein 4/5, FORMIC ACID
Authors:Eisenberg-Domovich, Y, Hytonen, V.P, Wilchek, M, Bayer, E.A, Kulomaa, M.S, Livnah, O.
Deposit date:2004-12-02
Release date:2005-05-24
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:High-resolution crystal structure of an avidin-related protein: insight into high-affinity biotin binding and protein stability.
Acta Crystallogr.,Sect.D, 61, 2005
1Y52
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BU of 1y52 by Molmil
structure of insect cell (Baculovirus) expressed AVR4 (C122S)-biotin complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Avidin-related protein 4/5, BIOTIN
Authors:Eisenberg-Domovich, Y, Hytonen, V.P, Wilchek, M, Bayer, E.A, Kulomaa, M.S, Livnah, O.
Deposit date:2004-12-02
Release date:2005-05-24
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:High-resolution crystal structure of an avidin-related protein: insight into high-affinity biotin binding and protein stability.
Acta Crystallogr.,Sect.D, 61, 2005
1Y55
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BU of 1y55 by Molmil
Crystal structure of the C122S mutant of E. Coli expressed avidin related protein 4 (AVR4)-biotin complex
Descriptor: Avidin-related protein 4/5, BIOTIN, FORMIC ACID
Authors:Eisenberg-Domovich, Y, Hytonen, V.P, Wilchek, M, Bayer, E.A, Kulomaa, M.S, Livnah, O.
Deposit date:2004-12-02
Release date:2005-05-24
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1 Å)
Cite:High-resolution crystal structure of an avidin-related protein: insight into high-affinity biotin binding and protein stability.
Acta Crystallogr.,Sect.D, 61, 2005
7P8Z
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BU of 7p8z by Molmil
Short wilavidin biotin complex
Descriptor: 1,2-ETHANEDIOL, 3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL, BIOTIN, ...
Authors:Avraham, O, Livnah, O.
Deposit date:2021-07-23
Release date:2021-11-17
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Wilavidin - a novel member of the avidin family that forms unique biotin-binding hexamers.
Febs J., 289, 2022
7P8Y
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BU of 7p8y by Molmil
Short wilavidin apo form
Descriptor: DI(HYDROXYETHYL)ETHER, HEXAETHYLENE GLYCOL, PENTAETHYLENE GLYCOL, ...
Authors:Avraham, O, Livnah, O.
Deposit date:2021-07-23
Release date:2021-11-17
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.18 Å)
Cite:Wilavidin - a novel member of the avidin family that forms unique biotin-binding hexamers.
Febs J., 289, 2022
7OUQ
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BU of 7ouq by Molmil
wilavidin biotin complex
Descriptor: BIOTIN, GLYCEROL, wilavidin
Authors:Avraham, O, Livnah, O.
Deposit date:2021-06-13
Release date:2021-11-17
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.63 Å)
Cite:Wilavidin - a novel member of the avidin family that forms unique biotin-binding hexamers.
Febs J., 289, 2022
7OUR
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BU of 7our by Molmil
Wilavidin apo form (P1 form)
Descriptor: wilavidin
Authors:Avraham, O, Livnah, O.
Deposit date:2021-06-13
Release date:2021-11-17
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Wilavidin - a novel member of the avidin family that forms unique biotin-binding hexamers.
Febs J., 289, 2022
1LEL
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BU of 1lel by Molmil
The avidin BCAP complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Avidin, E-AMINO BIOTINYL CAPROIC ACID
Authors:Pazy, Y, Kulik, T, Bayer, E.A, Wilchek, M, Livnah, O.
Deposit date:2002-04-10
Release date:2002-11-06
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Ligand exchange between proteins: exchange of biotin and biotin derivatives between avidin and streptavidin
J.Biol.Chem., 277, 2002
1LDO
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BU of 1ldo by Molmil
avidin-norbioitn complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, NORBIOTIN, avidin
Authors:Pazy, Y, Kulik, T, Bayer, E.A, Wilchek, M, Livnah, O.
Deposit date:2002-04-09
Release date:2002-11-06
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Ligand exchange between proteins: exchange of biotin and biotin derivatives between avidin and streptavidin
J.Biol.Chem., 277, 2002
1LDQ
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BU of 1ldq by Molmil
avidin-homobiotin complex
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Avidin, HOMOBIOTIN
Authors:Pazy, Y, Kulik, T, Bayer, E.A, Wilchek, M, Livnah, O.
Deposit date:2002-04-09
Release date:2002-11-06
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Ligand exchange between proteins: exchange of biotin and biotin derivatives between avidin and streptavidin
J.Biol.Chem., 277, 2002
2NPQ
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BU of 2npq by Molmil
A Novel Lipid Binding Site in the p38 alpha MAP Kinase
Descriptor: Mitogen-activated protein kinase 14, octyl beta-D-glucopyranoside
Authors:Diskin, R, Engelberg, D, Livnah, O.
Deposit date:2006-10-29
Release date:2007-10-16
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A novel lipid binding site formed by the MAP kinase insert in p38 alpha.
J.Mol.Biol., 375, 2008
2FSM
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BU of 2fsm by Molmil
mitogen activated protein kinase p38alpha (D176A+F327S) activating mutant form-B
Descriptor: Mitogen-activated protein kinase 14, octyl beta-D-glucopyranoside
Authors:Diskin, R, Livnah, O.
Deposit date:2006-01-23
Release date:2006-12-05
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Structures of p38alpha Active Mutants Reveal Conformational Changes in L16 Loop that Induce Autophosphorylation and Activation
J.Mol.Biol., 365, 2007
2FST
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BU of 2fst by Molmil
mitogen activated protein kinase p38alpha (D176A+F327L) activating mutant
Descriptor: Mitogen-activated protein kinase 14, octyl beta-D-glucopyranoside
Authors:Diskin, R, Livnah, O.
Deposit date:2006-01-23
Release date:2006-12-05
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structures of p38alpha Active Mutants Reveal Conformational Changes in L16 Loop that Induce Autophosphorylation and Activation
J.Mol.Biol., 365, 2007
2FSO
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BU of 2fso by Molmil
mitogen activated protein kinase p38alpha (D176A) activating mutant
Descriptor: Mitogen-activated protein kinase 14, octyl beta-D-glucopyranoside
Authors:Diskin, R, Livnah, O.
Deposit date:2006-01-23
Release date:2006-12-05
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:Structures of p38alpha Active Mutants Reveal Conformational Changes in L16 Loop that Induce Autophosphorylation and Activation
J.Mol.Biol., 365, 2007
2FSL
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BU of 2fsl by Molmil
mitogen activated protein kinase p38alpha (D176A+F327S) activating mutant form-A
Descriptor: Mitogen-activated protein kinase 14, octyl beta-D-glucopyranoside
Authors:Diskin, R, Livnah, O.
Deposit date:2006-01-23
Release date:2006-12-05
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structures of p38alpha Active Mutants Reveal Conformational Changes in L16 Loop that Induce Autophosphorylation and Activation
J.Mol.Biol., 365, 2007
1NQN
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Structure of Avm-W110K (W110K mutant of avidin)
Descriptor: Avidin
Authors:Pazy, Y, Eisenberg-Domovich, Y, Laitinen, O.H, Kulomaa, M.S, Bayer, E.A, Wilchek, M, Livnah, O.
Deposit date:2003-01-22
Release date:2003-07-15
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Dimer-Tetramer Transition between Solution and Crystalline States of Streptavidin and Avidin Mutants.
J.Bacteriol., 185, 2003

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