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PDB: 417 件

3DMX
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Benzene binding in the hydrophobic cavity of T4 lysozyme L99A mutant
分子名称: 2-HYDROXYETHYL DISULFIDE, BENZENE, CHLORIDE ION, ...
著者Liu, L, Matthews, B.W.
登録日2008-07-01
公開日2009-01-27
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Halogenated benzenes bound within a non-polar cavity in T4 lysozyme provide examples of I...S and I...Se halogen-bonding
J.Mol.Biol., 385, 2009
3DN3
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BU of 3dn3 by Molmil
Iodopentafluorobenzene binding in the hydrophobic cavity of T4 lysozyme L99A mutant
分子名称: 1,2,3,4,5-pentafluoro-6-iodobenzene, 2-HYDROXYETHYL DISULFIDE, Lysozyme, ...
著者Liu, L, Matthews, B.W.
登録日2008-07-01
公開日2008-11-11
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Halogenated benzenes bound within a non-polar cavity in T4 lysozyme provide examples of I...S and I...Se halogen-bonding.
J.Mol.Biol., 385, 2009
3DN0
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BU of 3dn0 by Molmil
Pentafluorobenzene binding in the hydrophobic cavity of T4 lysozyme L99A mutant
分子名称: 1,2,3,4,5-pentafluorobenzene, 2-HYDROXYETHYL DISULFIDE, CHLORIDE ION, ...
著者Liu, L, Matthews, B.W.
登録日2008-07-01
公開日2008-11-11
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Halogenated benzenes bound within a non-polar cavity in T4 lysozyme provide examples of I...S and I...Se halogen-bonding.
J.Mol.Biol., 385, 2009
3DMV
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BU of 3dmv by Molmil
Free of ligand binding in the hydrophobic cavity of T4 lysozyme L99A mutant
分子名称: 2-HYDROXYETHYL DISULFIDE, BETA-MERCAPTOETHANOL, CHLORIDE ION, ...
著者Liu, L, Matthews, B.W.
登録日2008-07-01
公開日2008-11-11
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Halogenated benzenes bound within a non-polar cavity in T4 lysozyme provide examples of I...S and I...Se halogen-bonding.
J.Mol.Biol., 385, 2009
3DN2
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BU of 3dn2 by Molmil
Bromopentafluorobenzene binding in the hydrophobic cavity of T4 lysozyme L99A mutant
分子名称: 1-bromo-2,3,4,5,6-pentafluorobenzene, 2-HYDROXYETHYL DISULFIDE, Lysozyme, ...
著者Liu, L, Matthews, B.W.
登録日2008-07-01
公開日2008-11-11
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Halogenated benzenes bound within a non-polar cavity in T4 lysozyme provide examples of I...S and I...Se halogen-bonding.
J.Mol.Biol., 385, 2009
3DN8
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BU of 3dn8 by Molmil
Iodopentafluorobenzene binding in the hydrophobic cavity of T4 lysozyme L99A mutant (seleno version)
分子名称: 1,2,3,4,5-pentafluoro-6-iodobenzene, 2-HYDROXYETHYL DISULFIDE, BETA-MERCAPTOETHANOL, ...
著者Liu, L, Matthews, B.W.
登録日2008-07-01
公開日2008-11-11
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Halogenated benzenes bound within a non-polar cavity in T4 lysozyme provide examples of I...S and I...Se halogen-bonding.
J.Mol.Biol., 385, 2009
3DNA
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BU of 3dna by Molmil
Iodobenzene binding in the hydrophobic cavity of T4 lysozyme L99A mutant (seleno version)
分子名称: 2-HYDROXYETHYL DISULFIDE, BETA-MERCAPTOETHANOL, CHLORIDE ION, ...
著者Liu, L, Matthews, B.W.
登録日2008-07-01
公開日2008-11-11
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Halogenated benzenes bound within a non-polar cavity in T4 lysozyme provide examples of I...S and I...Se halogen-bonding.
J.Mol.Biol., 385, 2009
3GUP
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BU of 3gup by Molmil
T4 lysozyme M102E/L99A mutant with buried charge in apolar cavity--pyridine binding
分子名称: CARBONATE ION, CHLORIDE ION, Lysozyme, ...
著者Liu, L, Matthews, B.W.
登録日2009-03-30
公開日2009-08-25
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Use of stabilizing mutations to engineer a charged group within a ligand-binding hydrophobic cavity in T4 lysozyme.
Biochemistry, 48, 2009
3GUN
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BU of 3gun by Molmil
T4 lysozyme M102E/L99A mutant with buried charge in apolar cavity--aniline binding
分子名称: ANILINE, CALCIUM ION, CHLORIDE ION, ...
著者Liu, L, Matthews, B.W.
登録日2009-03-30
公開日2009-08-25
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Use of stabilizing mutations to engineer a charged group within a ligand-binding hydrophobic cavity in T4 lysozyme.
Biochemistry, 48, 2009
5WYB
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BU of 5wyb by Molmil
Structure of Pseudomonas aeruginosa DspI
分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, ACETATE ION, Probable enoyl-CoA hydratase/isomerase
著者Liu, L, Peng, C, Li, T, Li, C, He, L, Song, Y, Zhu, Y, Shen, Y, Bao, R.
登録日2017-01-12
公開日2018-01-17
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Structural and functional studies on Pseudomonas aeruginosa DspI: implications for its role in DSF biosynthesis.
Sci Rep, 8, 2018
6A73
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BU of 6a73 by Molmil
Complex structure of CSN2 with IP6
分子名称: COP9 signalosome complex subunit 2,Endolysin, INOSITOL HEXAKISPHOSPHATE, SULFATE ION
著者Liu, L, Li, D, Rao, F, Wang, T.
登録日2018-07-02
公開日2019-07-03
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.447 Å)
主引用文献Basis for metabolite-dependent Cullin-RING ligase deneddylation by the COP9 signalosome.
Proc.Natl.Acad.Sci.USA, 117, 2020
6JW4
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BU of 6jw4 by Molmil
Degenerate RVD RG forms a distinct loop conformation
分子名称: DNA (5'-D(*AP*GP*AP*GP*AP*CP*GP*CP*GP*AP*AP*GP*GP*GP*AP*CP*A)-3'), DNA (5'-D(*TP*GP*TP*CP*CP*CP*TP*TP*(5HC)P*GP*CP*GP*TP*CP*TP*CP*T)-3'), TAL effector
著者Liu, L, Yi, C.
登録日2019-04-18
公開日2020-04-22
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.09 Å)
主引用文献Structural Insights into the Specific Recognition of 5-methylcytosine and 5-hydroxymethylcytosine by TAL Effectors.
J.Mol.Biol., 432, 2020
6JW5
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BU of 6jw5 by Molmil
RVD Q* recognizes 5hmC through water-mediated H bonds
分子名称: DNA (5'-D(*AP*GP*AP*GP*AP*CP*GP*CP*GP*AP*AP*GP*GP*GP*AP*CP*A)-3'), DNA (5'-D(*TP*GP*TP*CP*CP*CP*TP*TP*(5HC)P*GP*CP*GP*TP*CP*TP*CP*T)-3'), TAL effector
著者Liu, L, Yi, C.
登録日2019-04-18
公開日2020-04-22
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.99 Å)
主引用文献Structural Insights into the Specific Recognition of 5-methylcytosine and 5-hydroxymethylcytosine by TAL Effectors.
J.Mol.Biol., 432, 2020
6JW0
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BU of 6jw0 by Molmil
Universal RVD R* accommodates cytosine via water-mediated interactions
分子名称: DNA (5'-D(*AP*GP*AP*GP*AP*CP*GP*CP*GP*AP*AP*GP*GP*GP*AP*CP*A)-3'), DNA (5'-D(*TP*GP*TP*CP*CP*CP*TP*TP*CP*GP*CP*GP*TP*CP*TP*CP*T)-3'), TAL effector
著者Liu, L, Yi, C.
登録日2019-04-18
公開日2020-04-22
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Structural Insights into the Specific Recognition of 5-methylcytosine and 5-hydroxymethylcytosine by TAL Effectors.
J.Mol.Biol., 432, 2020
6JW3
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BU of 6jw3 by Molmil
Degenerate RVD RG forms a distinct loop conformation
分子名称: DNA (5'-D(*AP*GP*AP*GP*AP*CP*GP*CP*GP*AP*AP*GP*GP*GP*AP*CP*A)-3'), DNA (5'-D(*TP*GP*TP*CP*CP*CP*TP*TP*(5CM)P*GP*CP*GP*TP*CP*TP*CP*T)-3'), TAL effector
著者Liu, L, Yi, C.
登録日2019-04-18
公開日2020-04-22
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献Structural Insights into the Specific Recognition of 5-methylcytosine and 5-hydroxymethylcytosine by TAL Effectors.
J.Mol.Biol., 432, 2020
6JW1
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BU of 6jw1 by Molmil
Universal RVD R* accommodates 5mC via water-mediated interactions
分子名称: DNA (5'-D(*AP*GP*AP*GP*AP*CP*GP*CP*GP*AP*AP*GP*GP*GP*AP*CP*A)-3'), DNA (5'-D(*TP*GP*TP*CP*CP*CP*TP*TP*(5CM)P*GP*CP*GP*TP*CP*TP*CP*T)-3'), TAL effector
著者Liu, L, Yi, C.
登録日2019-04-18
公開日2020-04-22
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.49 Å)
主引用文献Structural Insights into the Specific Recognition of 5-methylcytosine and 5-hydroxymethylcytosine by TAL Effectors.
J.Mol.Biol., 432, 2020
6JW2
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BU of 6jw2 by Molmil
Universal RVD R* accommodates 5hmC via water-mediated interactions
分子名称: DNA (5'-D(*AP*GP*AP*GP*AP*CP*GP*CP*GP*AP*AP*GP*GP*GP*AP*CP*A)-3'), DNA (5'-D(*TP*GP*TP*CP*CP*CP*TP*TP*(5HC)P*GP*CP*GP*TP*CP*TP*CP*T)-3'), TAL effector
著者Liu, L, Yi, C.
登録日2019-04-18
公開日2020-04-22
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.03 Å)
主引用文献Structural Insights into the Specific Recognition of 5-methylcytosine and 5-hydroxymethylcytosine by TAL Effectors.
J.Mol.Biol., 432, 2020
2PL5
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BU of 2pl5 by Molmil
Crystal Structure of Homoserine O-acetyltransferase from Leptospira interrogans
分子名称: GLYCEROL, Homoserine O-acetyltransferase
著者Liu, L, Wang, M, Wang, Y, Wei, Z, Xu, H, Gong, W.
登録日2007-04-19
公開日2007-11-20
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of homoserine O-acetyltransferase from Leptospira interrogans
Biochem.Biophys.Res.Commun., 363, 2007
5Z34
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BU of 5z34 by Molmil
The structure of a chitin deacetylase from Bombyx mori provide the first insight into insect chitin deacetylation mechanism
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Chitin deacetylase, ZINC ION
著者Liu, L, Zhou, Y, Yang, Q.
登録日2018-01-05
公開日2019-02-20
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.399 Å)
主引用文献The structure of a chitin deacetylase from Bombyx mori provide the first insight into insect chitin deacetylation mechanism
To Be Published
5XWP
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BU of 5xwp by Molmil
Crystal structure of LbuCas13a-crRNA-target RNA ternary complex
分子名称: RNA (30-MER), RNA (59-MER), Uncharacterized protein
著者Liu, L, Li, X, Li, Z, Wang, Y.
登録日2017-06-30
公開日2017-09-13
最終更新日2017-10-18
実験手法X-RAY DIFFRACTION (3.086 Å)
主引用文献The Molecular Architecture for RNA-Guided RNA Cleavage by Cas13a.
Cell, 170, 2017
5WYD
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BU of 5wyd by Molmil
Structural of Pseudomonas aeruginosa DspI
分子名称: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, ISOPROPYL ALCOHOL, ...
著者Liu, L, Peng, C, Li, T, Li, C, He, L, Song, Y, Zhu, Y, Shen, Y, Bao, R.
登録日2017-01-12
公開日2018-01-31
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.101 Å)
主引用文献Structural and functional studies on Pseudomonas aeruginosa DspI: implications for its role in DSF biosynthesis.
Sci Rep, 8, 2018
8HE4
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BU of 8he4 by Molmil
The structure of chitin deacetylase Pst_13661 from Puccinia striiformis f. sp. tritici
分子名称: Chitin deacetylase, ZINC ION, ~{N}-oxidanylnaphthalene-1-carboxamide
著者Liu, L, Li, Y.C, Zhou, Y, Yang, Q.
登録日2022-11-07
公開日2023-05-31
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.93 Å)
主引用文献Inhibition of chitin deacetylases to attenuate plant fungal diseases.
Nat Commun, 14, 2023
8HE2
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BU of 8he2 by Molmil
The structure of chitin deacetylase Pst_13661 from Puccinia striiformis f. sp. tritici
分子名称: Chitin deacetylase, ZINC ION, tert-butyl N-[3-[[4-(oxidanylcarbamoyl)phenyl]methylamino]-3-oxidanylidene-propyl]carbamate
著者Liu, L, Li, Y.C, Zhou, Y, Yang, Q.
登録日2022-11-07
公開日2023-05-31
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.61 Å)
主引用文献Inhibition of chitin deacetylases to attenuate plant fungal diseases.
Nat Commun, 14, 2023
8HE1
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BU of 8he1 by Molmil
The structure of chitin deacetylase Pst_13661 from Puccinia striiformis f. sp. tritici
分子名称: BENZHYDROXAMIC ACID, Chitin deacetylase, ZINC ION
著者Liu, L, Li, Y.C, Zhou, Y, Yang, Q.
登録日2022-11-07
公開日2023-05-31
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.61 Å)
主引用文献Inhibition of chitin deacetylases to attenuate plant fungal diseases.
Nat Commun, 14, 2023
8HFA
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BU of 8hfa by Molmil
The structure of chitin deacetylase VdPDA1 from Verticillium dahliae
分子名称: NodB homology domain-containing protein, ZINC ION
著者Liu, L, Zhou, Y, Yang, Q.
登録日2022-11-10
公開日2023-05-31
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.64 Å)
主引用文献Inhibition of chitin deacetylases to attenuate plant fungal diseases.
Nat Commun, 14, 2023

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件を2024-08-21に公開中

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