PDB Search results for query - Protein Data Bank Japan

PDB: 100 results

Structure of a rare, non-standard sequence k-turn bound by L7Ae protein
Descriptor:	50S RIBOSOMAL PROTEIN L7AE, DIHYDROGENPHOSPHATE ION, TSKT-23, ...
Authors:	Huang, L, Lilley, D.M.J.
Deposit date:	2013-09-09
Release date:	2014-02-12
Last modified:	2023-12-20
Method:	X-RAY DIFFRACTION (2.95 Å)
Cite:	Structure of a Rare, Non-Standard Sequence K-Turn Bound by L7Ae Protein Nucleic Acids Res., 42, 2014

4BW0

The molecular recognition of kink turn structure by the L7Ae class of proteins
Descriptor:	50S RIBOSOMAL PROTEIN L7AE, HMKT-7, SULFATE ION
Authors:	Huang, L, Lilley, D.M.J.
Deposit date:	2013-06-29
Release date:	2013-11-06
Last modified:	2023-12-20
Method:	X-RAY DIFFRACTION (2.33 Å)
Cite:	The Molecular Recognition of Kink-Turn Structure by the L7Ae Class of Proteins. RNA, 19, 2013

4CS1

Crystal structure of a simple duplex kink turn, HmKt-7 with 2 Mg bound.
Descriptor:	5'-(GPGPCPGPAPAPGPAPAPCPCPGPGPGP GPAPGPCP*CP)-3', MAGNESIUM ION
Authors:	Huang, L, Lilley, D.M.J.
Deposit date:	2014-03-03
Release date:	2014-11-19
Last modified:	2023-12-20
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	A Critical Base Pair in K-Turns that Confers Folding Characteristics and Correlates with Biological Function. Nat.Commun., 5, 2014

2XO1

xpt-pbuX C74U Riboswitch from B. subtilis bound to N6-methyladenine
Descriptor:	ACETATE ION, COBALT HEXAMMINE(III), Guanine riboswitch, ...
Authors:	Daldrop, P, Reyes, F.E, Robinson, D.A, Hammond, C.M, Lilley, D.M.J, Batey, R.T, Brenk, R.
Deposit date:	2010-08-09
Release date:	2011-04-06
Last modified:	2024-05-08
Method:	X-RAY DIFFRACTION (1.6 Å)
Cite:	Novel ligands for a purine riboswitch discovered by RNA-ligand docking. Chem. Biol., 18, 2011

2XO0

xpt-pbuX C74U Riboswitch from B. subtilis bound to 24-diamino-1,3,5- triazine identified by virtual screening
Descriptor:	1,3,5-TRIAZINE-2,4-DIAMINE, ACETATE ION, COBALT HEXAMMINE(III), ...
Authors:	Daldrop, P, Reyes, F.E, Robinson, D.A, Hammond, C.M, Lilley, D.M.J, Batey, R.T, Brenk, R.
Deposit date:	2010-08-09
Release date:	2011-04-06
Last modified:	2023-12-20
Method:	X-RAY DIFFRACTION (1.7 Å)
Cite:	Novel ligands for a purine riboswitch discovered by RNA-ligand docking. Chem. Biol., 18, 2011

2XNW

XPT-PBUX C74U RIBOSWITCH FROM B. SUBTILIS BOUND TO A TRIAZOLO- TRIAZOLE-DIAMINE LIGAND IDENTIFIED BY VIRTUAL SCREENING
Descriptor:	3,6-diamino-1,5-dihydro[1,2,4]triazolo[4,3-b][1,2,4]triazol-4-ium, ACETATE ION, COBALT HEXAMMINE(III), ...
Authors:	Daldrop, P, Reyes, F.E, Robinson, D.A, Hammond, C.M, Lilley, D.M.J, Brenk, R.
Deposit date:	2010-08-06
Release date:	2011-04-06
Last modified:	2023-12-20
Method:	X-RAY DIFFRACTION (1.5 Å)
Cite:	Novel ligands for a purine riboswitch discovered by RNA-ligand docking. Chem. Biol., 18, 2011

2XNZ

xpt-pbuX C74U Riboswitch from B. subtilis bound to acetoguanamine identified by virtual screening
Descriptor:	6-METHYL-1,3,5-TRIAZINE-2,4-DIAMINE, ACETATE ION, COBALT HEXAMMINE(III), ...
Authors:	Daldrop, P, Reyes, F.E, Robinson, D.A, Hammond, C.M, Lilley, D.M.J, Batey, R.T, Brenk, R.
Deposit date:	2010-08-06
Release date:	2011-04-06
Last modified:	2023-12-20
Method:	X-RAY DIFFRACTION (1.59 Å)
Cite:	Novel ligands for a purine riboswitch discovered by RNA-ligand docking. Chem. Biol., 18, 2011

5FKF

SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UC
Descriptor:	BARIUM ION, POTASSIUM ION, S-ADENOSYLMETHIONINE, ...
Authors:	Huang, L, Lilley, D.M.J.
Deposit date:	2015-10-15
Release date:	2016-05-25
Last modified:	2024-01-10
Method:	X-RAY DIFFRACTION (2.8 Å)
Cite:	A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function. Nucleic Acids Res., 44, 2016

5FK1

SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UG
Descriptor:	BARIUM ION, S-ADENOSYLMETHIONINE, SAM-I RIBOSWITCH, ...
Authors:	Huang, L, Lilley, D.M.J.
Deposit date:	2015-10-14
Release date:	2016-05-25
Last modified:	2024-01-10
Method:	X-RAY DIFFRACTION (2.5 Å)
Cite:	A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function. Nucleic Acids Res., 44, 2016

5FKH

SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CU
Descriptor:	BARIUM ION, POTASSIUM ION, S-ADENOSYLMETHIONINE, ...
Authors:	Huang, L, Lilley, D.M.J.
Deposit date:	2015-10-15
Release date:	2016-05-25
Last modified:	2024-01-10
Method:	X-RAY DIFFRACTION (2.65 Å)
Cite:	A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function. Nucleic Acids Res., 44, 2016

5FKE

SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is GU
Descriptor:	BARIUM ION, POTASSIUM ION, S-ADENOSYLMETHIONINE, ...
Authors:	Huang, L, Lilley, D.M.J.
Deposit date:	2015-10-15
Release date:	2016-05-25
Last modified:	2024-01-10
Method:	X-RAY DIFFRACTION (2.8 Å)
Cite:	A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function. Nucleic Acids Res., 44, 2016

5FK5

SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is AA
Descriptor:	BARIUM ION, POTASSIUM ION, S-ADENOSYLMETHIONINE, ...
Authors:	Huang, L, Lilley, D.M.J.
Deposit date:	2015-10-14
Release date:	2016-05-25
Last modified:	2024-01-10
Method:	X-RAY DIFFRACTION (3.315 Å)
Cite:	A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function. Nucleic Acids Res., 44, 2016

5FK3

SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CC
Descriptor:	BARIUM ION, POTASSIUM ION, S-ADENOSYLMETHIONINE, ...
Authors:	Huang, L, Lilley, D.M.J.
Deposit date:	2015-10-14
Release date:	2016-05-25
Last modified:	2024-01-10
Method:	X-RAY DIFFRACTION (2.5 Å)
Cite:	A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function. Nucleic Acids Res., 44, 2016

5G4V

Association of four two-k-turn units based on Kt-7 3bG,3nC, forming a square-shaped structure
Descriptor:	50S RIBOSOMAL PROTEIN L7AE, HMKT-7
Authors:	Huang, L, Lilley, D.M.J.
Deposit date:	2016-05-17
Release date:	2016-09-28
Last modified:	2024-01-10
Method:	X-RAY DIFFRACTION (2.87 Å)
Cite:	A Quasi-Cyclic RNA Nano-Scale Molecular Object Constructed Using Kink Turns. Nanoscale, 8, 2016

5FKG

SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CG
Descriptor:	BARIUM ION, POTASSIUM ION, S-ADENOSYLMETHIONINE, ...
Authors:	Huang, L, Lilley, D.M.J.
Deposit date:	2015-10-15
Release date:	2016-05-25
Last modified:	2024-01-10
Method:	X-RAY DIFFRACTION (2.95 Å)
Cite:	A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function. Nucleic Acids Res., 44, 2016

5FK4

SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UU
Descriptor:	BARIUM ION, S-ADENOSYLMETHIONINE, SAM-I RIBOSWITCH
Authors:	Huang, L, Lilley, D.M.J.
Deposit date:	2015-10-14
Release date:	2016-05-25
Last modified:	2024-01-10
Method:	X-RAY DIFFRACTION (2.43 Å)
Cite:	A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function. Nucleic Acids Res., 44, 2016

5FJ0

Structure of the standard kink turn HmKt-7 as simple duplex in P4222 space group
Descriptor:	HMKT-7, MAGNESIUM ION
Authors:	Huang, L, Lilley, D.M.J.
Deposit date:	2015-10-05
Release date:	2016-09-28
Last modified:	2024-01-10
Method:	X-RAY DIFFRACTION (2.2 Å)
Cite:	A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function. Nucleic Acids Res., 44, 2016

5FK2

SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is GG
Descriptor:	BARIUM ION, S-ADENOSYLMETHIONINE, SAM-I RIBOSWITCH
Authors:	Huang, L, Lilley, D.M.J.
Deposit date:	2015-10-14
Release date:	2016-05-25
Last modified:	2024-01-10
Method:	X-RAY DIFFRACTION (2.6 Å)
Cite:	A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function. Nucleic Acids Res., 44, 2016

5G4T

The structure of a quasi-cyclic six k-turn duplex RNA species
Descriptor:	HMKT-7
Authors:	Huang, L, Lilley, D.M.J.
Deposit date:	2016-05-17
Release date:	2016-09-28
Last modified:	2024-01-10
Method:	X-RAY DIFFRACTION (2.751 Å)
Cite:	A Quasi-Cyclic RNA Nano-Scale Molecular Object Constructed Using Kink Turns. Nanoscale, 8, 2016

5G4U

Association of three two-k-turn units based on Kt-7 3bU,3nU, forming a triangular-shaped structure
Descriptor:	50S RIBOSOMAL PROTEIN L7AE, HMKT-7
Authors:	Huang, L, Lilley, D.M.J.
Deposit date:	2016-05-17
Release date:	2016-09-28
Last modified:	2024-01-10
Method:	X-RAY DIFFRACTION (2.65 Å)
Cite:	A Quasi-Cyclic RNA Nano-Scale Molecular Object Constructed Using Kink Turns. Nanoscale, 8, 2016

5FJ4

Structure of the standard kink turn HmKt-7 as stem loop bound with U1A and L7Ae proteins
Descriptor:	50S RIBOSOMAL PROTEIN L7AE, HMKT-7, U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A
Authors:	Huang, L, Lilley, D.M.J.
Deposit date:	2015-10-06
Release date:	2016-05-25
Last modified:	2024-01-10
Method:	X-RAY DIFFRACTION (2.95 Å)
Cite:	A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function. Nucleic Acids Res., 44, 2016

5FJ1

Structure of the standard kink turn HmKt-7 as stem loop in P212121 space group
Descriptor:	HMKT-7, MAGNESIUM ION, SODIUM ION
Authors:	Huang, L, Lilley, D.M.J.
Deposit date:	2015-10-05
Release date:	2016-05-25
Last modified:	2024-01-10
Method:	X-RAY DIFFRACTION (2.75 Å)
Cite:	A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function. Nucleic Acids Res., 44, 2016

5FKD

SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UA
Descriptor:	BARIUM ION, POTASSIUM ION, S-ADENOSYLMETHIONINE, ...
Authors:	Huang, L, Lilley, D.M.J.
Deposit date:	2015-10-15
Release date:	2016-05-25
Last modified:	2024-01-10
Method:	X-RAY DIFFRACTION (3 Å)
Cite:	A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function. Nucleic Acids Res., 44, 2016

5FJC

SAM-I riboswitch bearing the H. marismortui Kt-7 variant C-2bU
Descriptor:	BARIUM ION, MAGNESIUM ION, POTASSIUM ION, ...
Authors:	Huang, L, Lilley, D.M.J.
Deposit date:	2015-10-07
Release date:	2016-05-25
Last modified:	2024-01-10
Method:	X-RAY DIFFRACTION (1.71 Å)
Cite:	A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function. Nucleic Acids Res., 44, 2016

5FK6

SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CA
Descriptor:	BARIUM ION, POTASSIUM ION, S-ADENOSYLMETHIONINE, ...
Authors:	Huang, L, Lilley, D.M.J.
Deposit date:	2015-10-14
Release date:	2016-05-25
Last modified:	2024-01-10
Method:	X-RAY DIFFRACTION (2.5 Å)
Cite:	A Critical Base Pair in K-Turns Determines the Conformational Class Adopted, and Correlates with Biological Function. Nucleic Acids Res., 44, 2016

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Total results:	100
Displayed results:	25
Sorted by:	Hit score (from highest)
Deposition authors:	"Lilley, D.M."