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PDB: 27 results

1WKQ
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BU of 1wkq by Molmil
Crystal Structure of Bacillus subtilis Guanine Deaminase. The first domain-swapped structure in the cytidine deaminase superfamily
Descriptor: Guanine deaminase, IMIDAZOLE, ZINC ION
Authors:Liaw, S.H, Chang, Y.J, Lai, C.T.
Deposit date:2004-06-01
Release date:2004-07-13
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.17 Å)
Cite:Crystal Structure of Bacillus subtilis Guanine Deaminase: THE FIRST DOMAIN-SWAPPED STRUCTURE IN THE CYTIDINE DEAMINASE SUPERFAMILY
J.Biol.Chem., 279, 2004
2ZJO
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BU of 2zjo by Molmil
Crystal structure of hepatitis C virus NS3 helicase with a novel inhibitor
Descriptor: Genome polyprotein, N-[4-(BIS{4-[(3-SULFOPHENYL)AMINO]PHENYL}METHYLENE)CYCLOHEXA-2,5-DIEN-1-YLIDENE]-4-SULFOBENZENAMINIUM
Authors:Liaw, S.H, Chen, S.J, Hu, C.Y, Chi, W.K, Chu, I.D, Hwang, L.H, Chern, J.W, Chen, D.S.
Deposit date:2008-03-07
Release date:2009-03-10
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structure-Based Discovery of Triphenylmethane Derivatives as Novel Inhibitors of Hepatitis C Virus Helicase
To be Published
2D5N
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BU of 2d5n by Molmil
Crystal structure of a bifunctional deaminase and reductase involved in riboflavin biosynthesis
Descriptor: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Riboflavin biosynthesis protein ribD, ZINC ION
Authors:Liaw, S.H, Chen, S.J, Chang, Y.C.
Deposit date:2005-11-02
Release date:2005-11-29
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.97 Å)
Cite:Crystal structure of a bifunctional deaminase and reductase involved in riboflavin biosynthesis
To be Published
1VF8
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BU of 1vf8 by Molmil
The Crystal Structure of Ym1 at 1.31 A Resolution
Descriptor: secretory protein
Authors:Liaw, S.H, Tsai, M.L, Chang, N.C.
Deposit date:2004-04-09
Release date:2005-03-15
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.31 Å)
Cite:The crystal structure of Ym1 at 1.31 A resolution
J.Struct.Biol., 148, 2004
4G3M
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BU of 4g3m by Molmil
Complex Structure of Bacillus subtilis RibG: The Deamination Process in Riboflavin Biosynthesis
Descriptor: N-(5-amino-2,6-dioxo-1,2,3,6-tetrahydropyrimidin-4-yl)-5-O-phosphono-beta-D-ribofuranosylamine, Riboflavin biosynthesis protein RibD, ZINC ION, ...
Authors:Chen, S.C, Shen, C.Y, Yen, T.M, Yu, H.C, Chang, T.H, Lai, W.L, Liaw, S.H.
Deposit date:2012-07-15
Release date:2013-02-20
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.56 Å)
Cite:Evolution of vitamin B(2) biosynthesis: eubacterial RibG and fungal Rib2 deaminases.
Acta Crystallogr.,Sect.D, 69, 2013
5XV5
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BU of 5xv5 by Molmil
Crystal structure of Rib7 mutant S88E from Methanosarcina mazei
Descriptor: Conserved protein
Authors:Yeh, T.M, Chen, S.C, Chang, T.H, Huang, M.F, Liaw, S.H.
Deposit date:2017-06-26
Release date:2018-07-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Evolution of archaeal Rib7 and eubacterial RibG reductases in riboflavin biosynthesis: Substrate specificity and cofactor preference.
Biochem. Biophys. Res. Commun., 503, 2018
5XV0
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BU of 5xv0 by Molmil
Crystal structure of Rib7 mutant D33N from Methanosarcina mazei
Descriptor: Conserved protein, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Yeh, T.M, Chen, S.C, Chang, T.H, Huang, M.F, Liaw, S.H.
Deposit date:2017-06-26
Release date:2018-07-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Evolution of archaeal Rib7 and eubacterial RibG reductases in riboflavin biosynthesis: Substrate specificity and cofactor preference.
Biochem. Biophys. Res. Commun., 503, 2018
5XV2
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BU of 5xv2 by Molmil
Crystal structure of Rib7 mutant D33A from Methanosarcina mazei
Descriptor: Conserved protein, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Yeh, T.M, Chen, S.C, Chang, T.H, Huang, M.F, Liaw, S.H.
Deposit date:2017-06-26
Release date:2018-07-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2 Å)
Cite:Evolution of archaeal Rib7 and eubacterial RibG reductases in riboflavin biosynthesis: Substrate specificity and cofactor preference.
Biochem. Biophys. Res. Commun., 503, 2018
3EX8
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BU of 3ex8 by Molmil
Complex structure of bacillus subtilis RibG reduction mechanism in riboflavin biosynthesis
Descriptor: Riboflavin biosynthesis protein ribD, ZINC ION, [(2R,3S,4R,5E)-5-[(5-amino-2,6-dioxo-3H-pyrimidin-4-yl)imino]-2,3,4-trihydroxy-pentyl] dihydrogen phosphate
Authors:Chen, S.C, Lin, Y.H, Yu, H.C, Liaw, S.H.
Deposit date:2008-10-16
Release date:2008-11-04
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.56 Å)
Cite:Complex structure of Bacillus subtilis RibG: the reduction mechanism during riboflavin biosynthesis.
J.Biol.Chem., 284, 2009
4TVU
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BU of 4tvu by Molmil
Crystal structure of trehalose synthase from Deinococcus radiodurans reveals a closed conformation for catalysis of the intramolecular isomerization
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, MAGNESIUM ION, ...
Authors:Wang, Y.L, Chow, S.Y, Lin, Y.T, Liaw, S.H.
Deposit date:2014-06-28
Release date:2014-12-17
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structures of trehalose synthase from Deinococcus radiodurans reveal that a closed conformation is involved in catalysis of the intramolecular isomerization.
Acta Crystallogr.,Sect.D, 70, 2014
7DS1
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BU of 7ds1 by Molmil
Crystal structure of Aspergillus oryzae Rib2 deaminase in complex with DARIPP (C-terminal deletion mutant at pH 6.5)
Descriptor: CMP/dCMP-type deaminase domain-containing protein, ZINC ION, [(2~{R},3~{S},4~{S})-5-[[2,5-bis(azanyl)-6-oxidanylidene-1~{H}-pyrimidin-4-yl]amino]-2,3,4-tris(oxidanyl)pentyl] dihydrogen phosphate
Authors:Chen, S.C, Liaw, S.H, Hsu, C.H.
Deposit date:2020-12-30
Release date:2021-07-14
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Crystal structures of Aspergillus oryzae Rib2 deaminase: the functional mechanism involved in riboflavin biosynthesis.
Iucrj, 8, 2021
7DRZ
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BU of 7drz by Molmil
Crystal structure of Aspergillus oryzae Rib2 deaminase (C-terminal deletion mutant) at pH 4.6
Descriptor: CMP/dCMP-type deaminase domain-containing protein, ZINC ION
Authors:Chen, S.C, Liaw, S.H, Hsu, C.H.
Deposit date:2020-12-30
Release date:2021-07-14
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structures of Aspergillus oryzae Rib2 deaminase: the functional mechanism involved in riboflavin biosynthesis.
Iucrj, 8, 2021
7DS0
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BU of 7ds0 by Molmil
Crystal structure of Aspergillus oryzae Rib2 deaminase (C-terminal deletion mutant) at pH 6.5
Descriptor: CMP/dCMP-type deaminase domain-containing protein, SULFATE ION, ZINC ION
Authors:Chen, S.C, Liaw, S.H, Hsu, C.H.
Deposit date:2020-12-30
Release date:2021-07-14
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Crystal structures of Aspergillus oryzae Rib2 deaminase: the functional mechanism involved in riboflavin biosynthesis.
Iucrj, 8, 2021
7DRY
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BU of 7dry by Molmil
Crystal structure of Aspergillus oryzae Rib2 deaminase
Descriptor: CMP/dCMP-type deaminase domain-containing protein, SULFATE ION, ZINC ION
Authors:Chen, S.C, Liaw, S.H, Hsu, C.H.
Deposit date:2020-12-30
Release date:2021-07-14
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.44 Å)
Cite:Crystal structures of Aspergillus oryzae Rib2 deaminase: the functional mechanism involved in riboflavin biosynthesis.
Iucrj, 8, 2021
4DNS
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BU of 4dns by Molmil
Crystal structure of Bermuda grass isoallergen BG60 provides insight into the various cross-allergenicity of the pollen group 4 allergens
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, FAD-linked oxidoreductase BG60, ...
Authors:Huang, T.H, Peng, H.J, Su, S.N, Liaw, S.H.
Deposit date:2012-02-08
Release date:2012-12-05
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Various cross-reactivity of the grass pollen group 4 allergens: crystallographic study of the Bermuda grass isoallergen Cyn d 4.
Acta Crystallogr.,Sect.D, 68, 2012
5YKB
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BU of 5ykb by Molmil
The N253F mutant structure of trehalose synthase from Deinococcus radiodurans reveals an open active-site conformation
Descriptor: CALCIUM ION, MAGNESIUM ION, Trehalose synthase
Authors:Chow, S.Y, Hsieh, Y.C, Liaw, S.H.
Deposit date:2017-10-13
Release date:2017-10-25
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.76 Å)
Cite:The N253F mutant structure of trehalose synthase from Deinococcus radiodurans reveals an open active-site topology
Acta Crystallogr F Struct Biol Commun, 73, 2017
4WF7
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BU of 4wf7 by Molmil
Crystal structures of trehalose synthase from Deinococcus radiodurans reveal that a closed conformation is involved in the intramolecular isomerization catalysis
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, MAGNESIUM ION, ...
Authors:Wang, Y.L, Chow, S.Y, Lin, Y.T, Hsieh, Y.C, Lee, G.C, Liaw, S.H.
Deposit date:2014-09-13
Release date:2014-12-24
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.21 Å)
Cite:Structures of trehalose synthase from Deinococcus radiodurans reveal that a closed conformation is involved in catalysis of the intramolecular isomerization.
Acta Crystallogr.,Sect.D, 70, 2014
2B3Z
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BU of 2b3z by Molmil
Crystal structure of a bifunctional deaminase and reductase involved in riboflavin biosynthesis
Descriptor: Riboflavin biosynthesis protein ribD, ZINC ION
Authors:Chen, S.J, Chang, Y.C, Liaw, S.H.
Deposit date:2005-09-22
Release date:2005-11-29
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.41 Å)
Cite:Crystal structure of a bifunctional deaminase and reductase involved in riboflavin biosynthesis
To be Published
5XUX
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BU of 5xux by Molmil
Crystal structure of Rib7 from Methanosarcina mazei
Descriptor: Conserved protein, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
Authors:Yeh, T.M, Chen, S.C, Chang, T.H, Huang, M.F, Liaw, S.H.
Deposit date:2017-06-26
Release date:2018-07-04
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.27 Å)
Cite:Evolution of archaeal Rib7 and eubacterial RibG reductases in riboflavin biosynthesis: Substrate specificity and cofactor preference.
Biochem. Biophys. Res. Commun., 503, 2018
1RJP
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BU of 1rjp by Molmil
Crystal structure of D-aminoacylase in complex with 100mM CuCl2
Descriptor: ACETATE ION, COPPER (II) ION, D-aminoacylase, ...
Authors:Lai, W.L, Chou, L.Y, Ting, C.Y, Tsai, Y.C, Liaw, S.H.
Deposit date:2003-11-20
Release date:2004-04-20
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The functional role of the binuclear metal center in D-aminoacylase: one-metal activation and second-metal attenuation.
J.Biol.Chem., 279, 2004
1RK6
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BU of 1rk6 by Molmil
The enzyme in complex with 50mM CdCl2
Descriptor: ACETATE ION, CADMIUM ION, D-aminoacylase, ...
Authors:Lai, W.L, Chou, L.Y, Ting, C.Y, Tsai, Y.C, Liaw, S.H.
Deposit date:2003-11-20
Release date:2004-04-20
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:The functional role of the binuclear metal center in D-aminoacylase: one-metal activation and second-metal attenuation.
J.Biol.Chem., 279, 2004
1RK5
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BU of 1rk5 by Molmil
The D-aminoacylase mutant D366A in complex with 100mM CuCl2
Descriptor: ACETATE ION, COPPER (II) ION, D-aminoacylase, ...
Authors:Lai, W.L, Chou, L.Y, Ting, C.Y, Tsai, Y.C, Liaw, S.H.
Deposit date:2003-11-20
Release date:2004-04-20
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The functional role of the binuclear metal center in D-aminoacylase: one-metal activation and second-metal attenuation.
J.Biol.Chem., 279, 2004
1RJR
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BU of 1rjr by Molmil
The crystal structure of the D-aminoacylase D366A mutant in complex with 100mM ZnCl2
Descriptor: ACETATE ION, D-aminoacylase, ZINC ION
Authors:Lai, W.L, Chou, L.Y, Ting, C.Y, Tsai, Y.C, Liaw, S.H.
Deposit date:2003-11-20
Release date:2004-04-20
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The functional role of the binuclear metal center in D-aminoacylase: one-metal activation and second-metal attenuation.
J.Biol.Chem., 279, 2004
1RJQ
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BU of 1rjq by Molmil
The crystal structure of the D-aminoacylase mutant D366A
Descriptor: ACETATE ION, D-aminoacylase, ZINC ION
Authors:Lai, W.L, Chou, L.Y, Ting, C.Y, Tsai, Y.C, Liaw, S.H.
Deposit date:2003-11-20
Release date:2004-04-20
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:The functional role of the binuclear metal center in D-aminoacylase: one-metal activation and second-metal attenuation.
J.Biol.Chem., 279, 2004
1V51
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BU of 1v51 by Molmil
The functional role of the binuclear metal center in D-aminoacylase. One-metal activation and second-metal attenuation
Descriptor: ACETATE ION, D-aminoacylase, ZINC ION
Authors:Lai, W.L, Chou, L.Y, Ting, C.Y, Tsai, Y.C, Liaw, S.H.
Deposit date:2003-11-20
Release date:2004-04-20
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The functional role of the binuclear metal center in D-aminoacylase: one-metal activation and second-metal attenuation.
J.Biol.Chem., 279, 2004

 

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