Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 518 件

5KY8
DownloadVisualize
BU of 5ky8 by Molmil
mouse POFUT1 in complex with O-glucosylated mouse Notch1 EGF12 mutant (D464G) and GDP
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, GDP-fucose protein O-fucosyltransferase 1, GUANOSINE-5'-DIPHOSPHATE, ...
著者Li, Z, Rini, J.M.
登録日2016-07-21
公開日2017-05-17
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Recognition of EGF-like domains by the Notch-modifying O-fucosyltransferase POFUT1.
Nat. Chem. Biol., 13, 2017
5KY3
DownloadVisualize
BU of 5ky3 by Molmil
mouse POFUT1 in complex with mouse Factor VII EGF1 mutant (T101A) and GDP-fucose
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Coagulation factor VII, GDP-fucose protein O-fucosyltransferase 1, ...
著者Li, Z, Rini, J.M.
登録日2016-07-21
公開日2017-05-17
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (1.53 Å)
主引用文献Recognition of EGF-like domains by the Notch-modifying O-fucosyltransferase POFUT1.
Nat. Chem. Biol., 13, 2017
5L0R
DownloadVisualize
BU of 5l0r by Molmil
human POGLUT1 in complex with Notch1 EGF12 and UDP
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, CHLORIDE ION, ...
著者Li, Z, Rini, J.M.
登録日2016-07-28
公開日2017-08-09
最終更新日2021-03-24
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structural basis of Notch O-glucosylation and O-xylosylation by mammalian protein-O-glucosyltransferase 1 (POGLUT1).
Nat Commun, 8, 2017
5KY7
DownloadVisualize
BU of 5ky7 by Molmil
mouse POFUT1 in complex with O-glucosylated EGF(+) and GDP
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, EGF(+), GDP-fucose protein O-fucosyltransferase 1, ...
著者Li, Z, Rini, J.M.
登録日2016-07-21
公開日2017-05-17
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Recognition of EGF-like domains by the Notch-modifying O-fucosyltransferase POFUT1.
Nat. Chem. Biol., 13, 2017
8JZE
DownloadVisualize
BU of 8jze by Molmil
PSI-AcpPCI supercomplex from Symbiodinium
分子名称: (3S,3'R,5R,6S,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol, 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, ...
著者Li, Z.H, Li, X.Y, Wang, W.D.
登録日2023-07-05
公開日2024-02-28
実験手法ELECTRON MICROSCOPY (2.99 Å)
主引用文献Structures and organizations of PSI-AcpPCI supercomplexes from red tidal and coral symbiotic photosynthetic dinoflagellates.
Proc.Natl.Acad.Sci.USA, 121, 2024
8JW0
DownloadVisualize
BU of 8jw0 by Molmil
PSI-AcpPCI supercomplex from Amphidinium carterae
分子名称: (3S,3'R,5R,6S,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol, 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, ...
著者Li, Z.H, Li, X.Y, Wang, W.D.
登録日2023-06-28
公開日2024-02-28
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Structures and organizations of PSI-AcpPCI supercomplexes from red tidal and coral symbiotic photosynthetic dinoflagellates.
Proc.Natl.Acad.Sci.USA, 121, 2024
6JMK
DownloadVisualize
BU of 6jmk by Molmil
Ribosomal protein S7 from Mycobacterium tuberculosis
分子名称: 1,2-ETHANEDIOL, 30S ribosomal protein S7, GLYCEROL
著者Li, Z, Li, J.
登録日2019-03-11
公開日2019-03-20
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural insights into the complex of trigger factor chaperone and ribosomal protein S7 from Mycobacterium tuberculosis.
Biochem. Biophys. Res. Commun., 512, 2019
1YW5
DownloadVisualize
BU of 1yw5 by Molmil
Peptidyl-prolyl isomerase ESS1 from Candida albicans
分子名称: peptidyl prolyl cis/trans isomerase
著者Li, Z, Li, H, Devasahayam, G, Gemmill, T, Chaturvedi, V, Hanes, S.D, Van Roey, P.
登録日2005-02-17
公開日2005-04-26
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献The Structure of the Candida albicans Ess1 Prolyl Isomerase Reveals a Well-Ordered Linker that Restricts Domain Mobility
Biochemistry, 44, 2005
6U7H
DownloadVisualize
BU of 6u7h by Molmil
Cryo-EM structure of the HCoV-229E spike glycoprotein
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Li, Z, Benlekbir, S, Rubinstein, J.L, Rini, J.M.
登録日2019-09-02
公開日2019-11-13
最終更新日2020-07-29
実験手法ELECTRON MICROSCOPY (3.1 Å)
主引用文献The human coronavirus HCoV-229E S-protein structure and receptor binding.
Elife, 8, 2019
8W9Q
DownloadVisualize
BU of 8w9q by Molmil
Structure of partial Banna virus
分子名称: VP10, VP2, VP4, ...
著者Li, Z, Cao, S.
登録日2023-09-05
公開日2024-03-27
実験手法ELECTRON MICROSCOPY (5.7 Å)
主引用文献Cryo-EM structures of Banna virus in multiple states reveal stepwise detachment of viral spikes.
Nat Commun, 15, 2024
7KXK
DownloadVisualize
BU of 7kxk by Molmil
SARS-CoV-2 spike protein in complex with Fab 15033-7, 2-"up"-1-"down" conformation
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Fab 15033-7 heavy chain, ...
著者Li, Z, Rini, J.
登録日2020-12-04
公開日2021-02-03
最終更新日2021-08-25
実験手法ELECTRON MICROSCOPY (5 Å)
主引用文献Tetravalent SARS-CoV-2 Neutralizing Antibodies Show Enhanced Potency and Resistance to Escape Mutations.
J.Mol.Biol., 433, 2021
6AG0
DownloadVisualize
BU of 6ag0 by Molmil
The X-ray Crystallographic Structure of Maltooligosaccharide-forming Amylase from Bacillus stearothermophilus STB04
分子名称: 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, Alpha-amylase, CALCIUM ION
著者Li, Z.F, Li, Y.L, Ban, X.F, Zhang, C.Y, Jin, T.C, Xie, X.F, Gu, Z.B, Li, C.M.
登録日2018-08-09
公開日2018-10-10
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of a maltooligosaccharide-forming amylase from Bacillus stearothermophilus STB04.
Int.J.Biol.Macromol., 138, 2019
7BSI
DownloadVisualize
BU of 7bsi by Molmil
Epstein-Barr virus, one asymmetric unit structure of the icosahedral tegumented capsid
分子名称: Major capsid protein, Small capsomere-interacting protein, Triplex capsid protein 1, ...
著者Li, Z, Yu, X.
登録日2020-03-30
公開日2020-09-30
最終更新日2020-10-14
実験手法ELECTRON MICROSCOPY (4.1 Å)
主引用文献CryoEM structure of the tegumented capsid of Epstein-Barr virus.
Cell Res., 30, 2020
7BQX
DownloadVisualize
BU of 7bqx by Molmil
Epstein-Barr virus, C5 portal vertex
分子名称: Capsid vertex component 1, Capsid vertex component 2, Large tegument protein deneddylase, ...
著者Li, Z, Yu, X.
登録日2020-03-25
公開日2020-09-30
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (4.2 Å)
主引用文献CryoEM structure of the tegumented capsid of Epstein-Barr virus.
Cell Res., 30, 2020
3QII
DownloadVisualize
BU of 3qii by Molmil
Crystal structure of tudor domain 2 of human PHD finger protein 20
分子名称: PHD finger protein 20, UNKNOWN ATOM OR ION
著者Li, Z, Tempel, W, Wernimont, A.K, Chao, X, Bian, C, Lam, R, Crombet, L, Bountra, C, Weigelt, J, Arrowsmith, C.H, Edwards, A.M, Bochkarev, A, Min, J, Structural Genomics Consortium (SGC)
登録日2011-01-27
公開日2011-02-09
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structures of the Tudor domains of human PHF20 reveal novel structural variations on the Royal Family of proteins.
Febs Lett., 586, 2012
7BR8
DownloadVisualize
BU of 7br8 by Molmil
Epstein-Barr virus, C5 penton vertex, CATC absent.
分子名称: Major capsid protein, Small capsomere-interacting protein, Triplex capsid protein 1, ...
著者Li, Z, Yu, X.
登録日2020-03-26
公開日2020-09-30
最終更新日2020-10-14
実験手法ELECTRON MICROSCOPY (3.8 Å)
主引用文献CryoEM structure of the tegumented capsid of Epstein-Barr virus.
Cell Res., 30, 2020
7BR7
DownloadVisualize
BU of 7br7 by Molmil
Epstein-Barr virus, C1 portal-proximal penton vertex, CATC binding
分子名称: Capsid vertex component 1, Capsid vertex component 2, Large tegument protein deneddylase, ...
著者Li, Z, Yu, X.
登録日2020-03-26
公開日2020-09-30
最終更新日2024-03-27
実験手法ELECTRON MICROSCOPY (4.3 Å)
主引用文献CryoEM structure of the tegumented capsid of Epstein-Barr virus.
Cell Res., 30, 2020
8EWG
DownloadVisualize
BU of 8ewg by Molmil
Cryo-EM structure of a riboendonclease
分子名称: CRISPR-associated endonuclease Cas9, RNA (56-MER)
著者Li, Z, Wang, F.
登録日2022-10-23
公開日2023-08-30
最終更新日2024-05-01
実験手法ELECTRON MICROSCOPY (2.9 Å)
主引用文献Structural Basis for the Ribonuclease Activity of a Thermostable CRISPR-Cas13a from Thermoclostridium caenicola.
J.Mol.Biol., 435, 2023
3LWE
DownloadVisualize
BU of 3lwe by Molmil
The crystal structure of MPP8
分子名称: M-phase phosphoprotein 8
著者Li, Z, Li, Z, Ruan, J, Xu, C, Tong, Y, Pan, P.W, Tempel, W, Crombet, L, Min, J, Zang, J, Structural Genomics Consortium (SGC)
登録日2010-02-23
公開日2010-03-02
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.05 Å)
主引用文献Structural basis for specific binding of human MPP8 chromodomain to histone H3 methylated at lysine 9.
Plos One, 6, 2011
1QBY
DownloadVisualize
BU of 1qby by Molmil
THE SOLUTION STRUCTURE OF A BAY-REGION 1R-BENZ[A]ANTHRACENE OXIDE ADDUCT AT THE N6 POSITION OF ADENINE OF AN OLIGODEOXYNUCLEOTIDE CONTAINING THE HUMAN N-RAS CODON 61 SEQUENCE
分子名称: 1R,2S,3R,4S-TETRAHYDRO-BENZO[A]ANTHRACENE-2,3,4-TRIOL, 5'-D(*CP*GP*GP*AP*CP*(BZA)AP*AP*GP*AP*AP*G)-3', 5'-D(*CP*TP*TP*CP*TP*TP*GP*TP*CP*CP* G)-3'
著者Li, Z, Mao, H, Kim, H.-Y, Tamura, P.J, Harris, C.M, Harris, T.M, Stone, M.P.
登録日1999-04-27
公開日1999-05-06
最終更新日2022-03-02
実験手法SOLUTION NMR
主引用文献Intercalation of the (-)-(1R,2S,3R, 4S)-N6-[1-benz[a]anthracenyl]-2'-deoxyadenosyl adduct in an oligodeoxynucleotide containing the human N-ras codon 61 sequence.
Biochemistry, 38, 1999
5I0A
DownloadVisualize
BU of 5i0a by Molmil
RecA mini intein in complex with cisplatin
分子名称: 3,3',3''-phosphanetriyltripropanoic acid, Cisplatin, Intein, ...
著者Li, Z, Zhang, J, Li, H.M.
登録日2016-02-03
公開日2016-09-21
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structural insights into protein splicing inhibition by platinum therapeutics as potential anti-microbials
To be published
7KXJ
DownloadVisualize
BU of 7kxj by Molmil
SARS-CoV-2 spike protein in complex with Fab 15033-7, 3-"up", asymmetric
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Fab 15033-7 heavy chain, ...
著者Li, Z, Rini, J.
登録日2020-12-04
公開日2021-02-03
最終更新日2021-08-25
実験手法ELECTRON MICROSCOPY (6.4 Å)
主引用文献Tetravalent SARS-CoV-2 Neutralizing Antibodies Show Enhanced Potency and Resistance to Escape Mutations.
J.Mol.Biol., 433, 2021
7CZJ
DownloadVisualize
BU of 7czj by Molmil
The Crystal Structure of Family 20 CBM of Maltotetraose-forming Amylase from Pseudomonas Saccharophila STB07
分子名称: Glucan 1,4-alpha-maltotetraohydrolase, SULFATE ION
著者Li, Z.F, Ban, X.F, Zhang, Z.Q, Li, C.M.
登録日2020-09-08
公開日2021-09-08
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.495 Å)
主引用文献The Crystal Structure of Family 20 CBM of Maltotetraose-forming Amylase from Pseudomonas Saccharophila STB07
To Be Published
8HFR
DownloadVisualize
BU of 8hfr by Molmil
NPC-trapped pre-60S particle
分子名称: 25S ribosomal RNA, 5.8S ribosomal RNA, 5S ribosomal RNA, ...
著者Li, Z.Q, Chen, S.J, Sui, S.F.
登録日2022-11-12
公開日2023-04-12
最終更新日2023-06-28
実験手法ELECTRON MICROSCOPY (2.64 Å)
主引用文献Nuclear export of pre-60S particles through the nuclear pore complex.
Nature, 618, 2023
7EAV
DownloadVisualize
BU of 7eav by Molmil
The X-ray crystallographic structure of glycogen debranching enzyme from Sulfolobus solfataricus STB09
分子名称: Glycogen debranching enzyme
著者Li, Z.F, Ban, X.F, Tian, Y.X, Li, C.M, Cheng, L, Hong, Y, Gu, Z.B.
登録日2021-03-08
公開日2022-03-09
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.803 Å)
主引用文献The X-ray Crystallographic Structure of Debranching Enzyme from Sulfolobus solfataricus STB09
To Be Published

219869

件を2024-05-15に公開中

PDB statisticsPDBj update infoContact PDBjnumon