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PDB: 272 results

3C6E
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BU of 3c6e by Molmil
Crystal structure of the precursor membrane protein- envelope protein heterodimer from the dengue 2 virus at neutral pH
Descriptor: 2-acetamido-2-deoxy-alpha-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope protein E, ...
Authors:Li, L.
Deposit date:2008-02-04
Release date:2008-04-08
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:The flavivirus precursor membrane-envelope protein complex: structure and maturation.
Science, 319, 2008
5EUL
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BU of 5eul by Molmil
Structure of the SecA-SecY complex with a translocating polypeptide substrate
Descriptor: ADENOSINE-5'-DIPHOSPHATE, AYC08, BERYLLIUM TRIFLUORIDE ION, ...
Authors:Li, L, Park, E, Ling, J, Ingram, J, Ploegh, H, Rapoport, T.A.
Deposit date:2015-11-18
Release date:2016-03-09
Last modified:2019-12-25
Method:X-RAY DIFFRACTION (3.7 Å)
Cite:Crystal structure of a substrate-engaged SecY protein-translocation channel.
Nature, 531, 2016
8E13
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BU of 8e13 by Molmil
Structures of HLA-B8E76C loaded with long peptides reveal novel features at the N-terminus of the groove
Descriptor: Beta-2-microglobulin, MHC class I antigen, PHE-ALA-LYS-LYS-LYS-TYR-CYS-LEU
Authors:Li, L, Bouvier, M.
Deposit date:2022-08-09
Release date:2023-07-26
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.37 Å)
Cite:Crystal structures of MHC class I complexes reveal the elusive intermediate conformations explored during peptide editing.
Nat Commun, 14, 2023
8E8I
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BU of 8e8i by Molmil
Structures of HLA-B8E76C loaded with long peptides reveal novel features at the N-terminus of the groove
Descriptor: Beta-2-microglobulin, MHC class I antigen, PHE-VAL-LYS-LYS-LYS-TYR-CYS-LEU
Authors:Li, L, Bouvier, M.
Deposit date:2022-08-25
Release date:2023-07-26
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.49 Å)
Cite:Crystal structures of MHC class I complexes reveal the elusive intermediate conformations explored during peptide editing.
Nat Commun, 14, 2023
8EC5
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BU of 8ec5 by Molmil
Structures of HLA-B8E76C loaded with long peptides reveal novel features at the N-terminus of the groove
Descriptor: Beta-2-microglobulin, MHC class I antigen, peptide RARARARARARAFVKKKYCL
Authors:Li, L, Bouvier, M.
Deposit date:2022-09-01
Release date:2023-07-26
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:Crystal structures of MHC class I complexes reveal the elusive intermediate conformations explored during peptide editing.
Nat Commun, 14, 2023
8E2Z
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BU of 8e2z by Molmil
Structures of HLA-B8E76C loaded with long peptides reveal novel features at the N-terminus of the groove
Descriptor: ALA-PHE-ALA-LYS-LYS-LYS-TYR-CYS-LEU, Beta-2-microglobulin, MHC class I protein (Fragment)
Authors:Li, L, Bouvier, M.
Deposit date:2022-08-16
Release date:2023-08-02
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.13 Å)
Cite:Crystal structures of MHC class I complexes reveal the elusive intermediate conformations explored during peptide editing.
Nat Commun, 14, 2023
8ELC
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BU of 8elc by Molmil
Human JNK2 bound to covalent inhibitor YL2056
Descriptor: 4-(dimethylamino)-N-{4-[(3S)-3-({4-[(8R)-2-phenylpyrazolo[1,5-a]pyridin-3-yl]pyrimidin-2-yl}amino)pyrrolidine-1-carbonyl]phenyl}butanamide, Mitogen-activated protein kinase 9
Authors:Li, L, Gurbani, D, Westover, K.D.
Deposit date:2022-09-23
Release date:2023-06-28
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.072 Å)
Cite:Development of a Covalent Inhibitor of c-Jun N-Terminal Protein Kinase (JNK) 2/3 with Selectivity over JNK1.
J.Med.Chem., 66, 2023
3MUU
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BU of 3muu by Molmil
Crystal structure of the Sindbis virus E2-E1 heterodimer at low pH
Descriptor: Structural polyprotein, alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Li, L, Jose, J, Xiang, Y, Kuhn, R.J, Rossmann, M.G.
Deposit date:2010-05-03
Release date:2010-11-24
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (3.29 Å)
Cite:Structural changes of envelope proteins during alphavirus fusion.
Nature, 468, 2010
3DAM
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BU of 3dam by Molmil
Crystal Structure of Allene oxide synthase
Descriptor: Cytochrome P450 74A2, PROTOPORPHYRIN IX CONTAINING FE
Authors:Li, L, Wang, X.
Deposit date:2008-05-29
Release date:2008-09-23
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Modes of heme binding and substrate access for cytochrome P450 CYP74A revealed by crystal structures of allene oxide synthase.
Proc.Natl.Acad.Sci.Usa, 105, 2008
5DXY
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BU of 5dxy by Molmil
Crystal structure of Dbr2
Descriptor: Artemisinic aldehyde Delta(11(13)) reductase, FLAVIN MONONUCLEOTIDE, [[(2R,3S,4R,5R)-5-(5-aminocarbonyl-3,4-dihydro-2H-pyridin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-3-oxidanyl-4-phosphonooxy-oxolan-2-yl]methyl hydrogen phosphate
Authors:Li, L, Chen, T.T, Xu, Y.C.
Deposit date:2015-09-24
Release date:2016-10-05
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:The Crystal structure of Dbr2
to be published
5DY3
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BU of 5dy3 by Molmil
Crystal structure of Dbr2
Descriptor: Artemisinic aldehyde Delta(11(13)) reductase, DI(HYDROXYETHYL)ETHER, FLAVIN MONONUCLEOTIDE, ...
Authors:Li, L, Chen, T.T, Xu, Y.C.
Deposit date:2015-09-24
Release date:2016-10-05
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.82 Å)
Cite:The Crystal structure of Dbr2
to be published
5DXX
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BU of 5dxx by Molmil
Crystal structure of Dbr2
Descriptor: Artemisinic aldehyde Delta(11(13)) reductase, FLAVIN MONONUCLEOTIDE
Authors:Li, L, Chen, T.T, Xu, Y.C.
Deposit date:2015-09-24
Release date:2016-10-05
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:The Crystal structure of Dbr2
to be published
5DY2
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BU of 5dy2 by Molmil
Crystal structure of Dbr2 with mutation M27L
Descriptor: 1,6-DIHYDROXY NAPHTHALENE, Artemisinic aldehyde Delta(11(13)) reductase, FLAVIN MONONUCLEOTIDE
Authors:Li, L, Chen, T.T, Xu, Y.C.
Deposit date:2015-09-24
Release date:2016-10-05
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:The Crystal structure of Dbr2
to be published
8W8N
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BU of 8w8n by Molmil
Thermus thermophilus initiation transcription complex in the pre-translocated state
Descriptor: DNA (21-MER), DNA (27-MER), DNA-directed RNA polymerase subunit alpha, ...
Authors:Li, L, Zhang, Y.
Deposit date:2023-09-04
Release date:2024-07-24
Method:X-RAY DIFFRACTION (2.693 Å)
Cite:Nanopore tweezers show fractional-nucleotide translocation in sequence-dependent pausing by RNA polymerase.
Proc.Natl.Acad.Sci.USA, 121, 2024
8W8P
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BU of 8w8p by Molmil
Thermus thermophilus initiation transcription complex containing CMPcPP in the post-translocated state
Descriptor: 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]cytidine, DNA (21-MER), DNA (27-MER), ...
Authors:Li, L, Zhang, Y.
Deposit date:2023-09-04
Release date:2024-07-24
Method:X-RAY DIFFRACTION (3.165 Å)
Cite:Nanopore tweezers show fractional-nucleotide translocation in sequence-dependent pausing by RNA polymerase.
Proc.Natl.Acad.Sci.USA, 121, 2024
3MUW
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BU of 3muw by Molmil
Pseudo-atomic structure of the E2-E1 protein shell in Sindbis virus
Descriptor: Structural polyprotein
Authors:Li, L, Jose, J, Xiang, Y, Kuhn, R.J, Rossmann, M.G.
Deposit date:2010-05-03
Release date:2010-11-24
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (9 Å)
Cite:Structural changes of envelope proteins during alphavirus fusion.
Nature, 468, 2010
8WOY
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BU of 8woy by Molmil
Cryo-EM structure of SARS-CoV-2 Omicron BA.4/5 RBD in complex with rabbit ACE2 (local refinement)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme, Spike protein S1, ...
Authors:Li, L.J, Shi, K.Y, Yu, G.H, Gao, G.F.
Deposit date:2023-10-08
Release date:2023-12-13
Last modified:2024-02-28
Method:ELECTRON MICROSCOPY (3.14 Å)
Cite:Structural basis of increased binding affinities of spikes from SARS-CoV-2 Omicron variants to rabbit and hare ACE2s reveals the expanding host tendency.
Mbio, 15, 2024
8WOZ
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BU of 8woz by Molmil
Cryo-EM structure of SARS-CoV RBD in complex with rabbit ACE2
Descriptor: Angiotensin-converting enzyme, Spike protein S1, ZINC ION
Authors:Li, L.J, Shi, K.Y, Yu, G.H, Gao, G.F.
Deposit date:2023-10-08
Release date:2023-12-13
Last modified:2024-10-30
Method:ELECTRON MICROSCOPY (3.25 Å)
Cite:Structural basis of increased binding affinities of spikes from SARS-CoV-2 Omicron variants to rabbit and hare ACE2s reveals the expanding host tendency.
Mbio, 15, 2024
8WOX
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BU of 8wox by Molmil
Cryo-EM structure of SARS-CoV-2 prototype RBD in complex with rabbit ACE2 (local refinement)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme, Spike protein S1, ...
Authors:Li, L.J, Shi, K.Y, Yu, G.H, Gao, G.F.
Deposit date:2023-10-08
Release date:2023-12-13
Last modified:2024-02-28
Method:ELECTRON MICROSCOPY (2.75 Å)
Cite:Structural basis of increased binding affinities of spikes from SARS-CoV-2 Omicron variants to rabbit and hare ACE2s reveals the expanding host tendency.
Mbio, 15, 2024
8W8O
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BU of 8w8o by Molmil
Thermus thermophilus initiation complex in the half-translocated state
Descriptor: DNA (21-MER), DNA (27-MER), DNA-directed RNA polymerase subunit alpha, ...
Authors:Li, L, Zhang, Y.
Deposit date:2023-09-04
Release date:2024-07-24
Method:X-RAY DIFFRACTION (2.512 Å)
Cite:Nanopore tweezers show fractional-nucleotide translocation in sequence-dependent pausing by RNA polymerase.
Proc.Natl.Acad.Sci.USA, 121, 2024
3DAN
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BU of 3dan by Molmil
Crystal Structure of Allene oxide synthase
Descriptor: Cytochrome P450 74A2, PROTOPORPHYRIN IX CONTAINING FE
Authors:Li, L, Wang, X.
Deposit date:2008-05-29
Release date:2008-09-23
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Modes of heme binding and substrate access for cytochrome P450 CYP74A revealed by crystal structures of allene oxide synthase.
Proc.Natl.Acad.Sci.Usa, 105, 2008
3DBM
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BU of 3dbm by Molmil
Crystal Structure of Allene oxide synthase
Descriptor: (9E,11E,13S)-13-hydroxyoctadeca-9,11-dienoic acid, Cytochrome P450 74A2, PROTOPORPHYRIN IX CONTAINING FE
Authors:Li, L, Wang, X.
Deposit date:2008-06-01
Release date:2008-09-23
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Modes of heme binding and substrate access for cytochrome P450 CYP74A revealed by crystal structures of allene oxide synthase.
Proc.Natl.Acad.Sci.Usa, 105, 2008
3IPZ
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BU of 3ipz by Molmil
Crystal structure of Arabidopsis monothiol glutaredoxin AtGRXcp
Descriptor: Monothiol glutaredoxin-S14, chloroplastic
Authors:Li, L, Cheng, N, Wang, X.
Deposit date:2009-08-18
Release date:2010-06-16
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of Arabidopsis chloroplastic monothiol glutaredoxin AtGRXcp.
Acta Crystallogr.,Sect.D, 66, 2010
5VNQ
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BU of 5vnq by Molmil
Neutron crystallographic structure of perdeuterated T4 lysozyme cysteine-free pseudo-wild type at cryogenic temperature
Descriptor: CHLORIDE ION, Endolysin
Authors:Li, L, Shukla, S, Meilleur, F, Standaert, R.F, Pierce, J, Myles, D.A.A, Cuneo, M.J.
Deposit date:2017-05-01
Release date:2017-07-26
Last modified:2023-10-04
Method:NEUTRON DIFFRACTION (2.2 Å)
Cite:Neutron crystallographic studies of T4 lysozyme at cryogenic temperature.
Protein Sci., 26, 2017
5VNR
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BU of 5vnr by Molmil
X-ray structure of perdeuterated T4 lysozyme cysteine-free pseudo-wild type at cryogenic temperature
Descriptor: 2-HYDROXYETHYL DISULFIDE, CHLORIDE ION, Endolysin, ...
Authors:Li, L, Shukla, S, Meilleur, F, Standaert, R.F, Pierce, J, Myles, D.A.A, Cuneo, M.J.
Deposit date:2017-05-01
Release date:2017-07-26
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.631 Å)
Cite:Neutron crystallographic studies of T4 lysozyme at cryogenic temperature.
Protein Sci., 26, 2017

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