Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 272 件

3C6E
DownloadVisualize
BU of 3c6e by Molmil
Crystal structure of the precursor membrane protein- envelope protein heterodimer from the dengue 2 virus at neutral pH
分子名称: 2-acetamido-2-deoxy-alpha-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, Envelope protein E, ...
著者Li, L.
登録日2008-02-04
公開日2008-04-08
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献The flavivirus precursor membrane-envelope protein complex: structure and maturation.
Science, 319, 2008
5EUL
DownloadVisualize
BU of 5eul by Molmil
Structure of the SecA-SecY complex with a translocating polypeptide substrate
分子名称: ADENOSINE-5'-DIPHOSPHATE, AYC08, BERYLLIUM TRIFLUORIDE ION, ...
著者Li, L, Park, E, Ling, J, Ingram, J, Ploegh, H, Rapoport, T.A.
登録日2015-11-18
公開日2016-03-09
最終更新日2019-12-25
実験手法X-RAY DIFFRACTION (3.7 Å)
主引用文献Crystal structure of a substrate-engaged SecY protein-translocation channel.
Nature, 531, 2016
8E13
DownloadVisualize
BU of 8e13 by Molmil
Structures of HLA-B8E76C loaded with long peptides reveal novel features at the N-terminus of the groove
分子名称: Beta-2-microglobulin, MHC class I antigen, PHE-ALA-LYS-LYS-LYS-TYR-CYS-LEU
著者Li, L, Bouvier, M.
登録日2022-08-09
公開日2023-07-26
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.37 Å)
主引用文献Crystal structures of MHC class I complexes reveal the elusive intermediate conformations explored during peptide editing.
Nat Commun, 14, 2023
8E8I
DownloadVisualize
BU of 8e8i by Molmil
Structures of HLA-B8E76C loaded with long peptides reveal novel features at the N-terminus of the groove
分子名称: Beta-2-microglobulin, MHC class I antigen, PHE-VAL-LYS-LYS-LYS-TYR-CYS-LEU
著者Li, L, Bouvier, M.
登録日2022-08-25
公開日2023-07-26
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.49 Å)
主引用文献Crystal structures of MHC class I complexes reveal the elusive intermediate conformations explored during peptide editing.
Nat Commun, 14, 2023
8EC5
DownloadVisualize
BU of 8ec5 by Molmil
Structures of HLA-B8E76C loaded with long peptides reveal novel features at the N-terminus of the groove
分子名称: Beta-2-microglobulin, MHC class I antigen, peptide RARARARARARAFVKKKYCL
著者Li, L, Bouvier, M.
登録日2022-09-01
公開日2023-07-26
最終更新日2024-10-23
実験手法X-RAY DIFFRACTION (1.22 Å)
主引用文献Crystal structures of MHC class I complexes reveal the elusive intermediate conformations explored during peptide editing.
Nat Commun, 14, 2023
8E2Z
DownloadVisualize
BU of 8e2z by Molmil
Structures of HLA-B8E76C loaded with long peptides reveal novel features at the N-terminus of the groove
分子名称: ALA-PHE-ALA-LYS-LYS-LYS-TYR-CYS-LEU, Beta-2-microglobulin, MHC class I protein (Fragment)
著者Li, L, Bouvier, M.
登録日2022-08-16
公開日2023-08-02
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.13 Å)
主引用文献Crystal structures of MHC class I complexes reveal the elusive intermediate conformations explored during peptide editing.
Nat Commun, 14, 2023
8ELC
DownloadVisualize
BU of 8elc by Molmil
Human JNK2 bound to covalent inhibitor YL2056
分子名称: 4-(dimethylamino)-N-{4-[(3S)-3-({4-[(8R)-2-phenylpyrazolo[1,5-a]pyridin-3-yl]pyrimidin-2-yl}amino)pyrrolidine-1-carbonyl]phenyl}butanamide, Mitogen-activated protein kinase 9
著者Li, L, Gurbani, D, Westover, K.D.
登録日2022-09-23
公開日2023-06-28
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.072 Å)
主引用文献Development of a Covalent Inhibitor of c-Jun N-Terminal Protein Kinase (JNK) 2/3 with Selectivity over JNK1.
J.Med.Chem., 66, 2023
3MUU
DownloadVisualize
BU of 3muu by Molmil
Crystal structure of the Sindbis virus E2-E1 heterodimer at low pH
分子名称: Structural polyprotein, alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Li, L, Jose, J, Xiang, Y, Kuhn, R.J, Rossmann, M.G.
登録日2010-05-03
公開日2010-11-24
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (3.29 Å)
主引用文献Structural changes of envelope proteins during alphavirus fusion.
Nature, 468, 2010
3DAM
DownloadVisualize
BU of 3dam by Molmil
Crystal Structure of Allene oxide synthase
分子名称: Cytochrome P450 74A2, PROTOPORPHYRIN IX CONTAINING FE
著者Li, L, Wang, X.
登録日2008-05-29
公開日2008-09-23
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Modes of heme binding and substrate access for cytochrome P450 CYP74A revealed by crystal structures of allene oxide synthase.
Proc.Natl.Acad.Sci.Usa, 105, 2008
5DXY
DownloadVisualize
BU of 5dxy by Molmil
Crystal structure of Dbr2
分子名称: Artemisinic aldehyde Delta(11(13)) reductase, FLAVIN MONONUCLEOTIDE, [[(2R,3S,4R,5R)-5-(5-aminocarbonyl-3,4-dihydro-2H-pyridin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-3-oxidanyl-4-phosphonooxy-oxolan-2-yl]methyl hydrogen phosphate
著者Li, L, Chen, T.T, Xu, Y.C.
登録日2015-09-24
公開日2016-10-05
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.77 Å)
主引用文献The Crystal structure of Dbr2
to be published
5DY3
DownloadVisualize
BU of 5dy3 by Molmil
Crystal structure of Dbr2
分子名称: Artemisinic aldehyde Delta(11(13)) reductase, DI(HYDROXYETHYL)ETHER, FLAVIN MONONUCLEOTIDE, ...
著者Li, L, Chen, T.T, Xu, Y.C.
登録日2015-09-24
公開日2016-10-05
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.82 Å)
主引用文献The Crystal structure of Dbr2
to be published
5DXX
DownloadVisualize
BU of 5dxx by Molmil
Crystal structure of Dbr2
分子名称: Artemisinic aldehyde Delta(11(13)) reductase, FLAVIN MONONUCLEOTIDE
著者Li, L, Chen, T.T, Xu, Y.C.
登録日2015-09-24
公開日2016-10-05
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献The Crystal structure of Dbr2
to be published
5DY2
DownloadVisualize
BU of 5dy2 by Molmil
Crystal structure of Dbr2 with mutation M27L
分子名称: 1,6-DIHYDROXY NAPHTHALENE, Artemisinic aldehyde Delta(11(13)) reductase, FLAVIN MONONUCLEOTIDE
著者Li, L, Chen, T.T, Xu, Y.C.
登録日2015-09-24
公開日2016-10-05
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.57 Å)
主引用文献The Crystal structure of Dbr2
to be published
8W8N
DownloadVisualize
BU of 8w8n by Molmil
Thermus thermophilus initiation transcription complex in the pre-translocated state
分子名称: DNA (21-MER), DNA (27-MER), DNA-directed RNA polymerase subunit alpha, ...
著者Li, L, Zhang, Y.
登録日2023-09-04
公開日2024-07-24
実験手法X-RAY DIFFRACTION (2.693 Å)
主引用文献Nanopore tweezers show fractional-nucleotide translocation in sequence-dependent pausing by RNA polymerase.
Proc.Natl.Acad.Sci.USA, 121, 2024
8W8P
DownloadVisualize
BU of 8w8p by Molmil
Thermus thermophilus initiation transcription complex containing CMPcPP in the post-translocated state
分子名称: 5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]cytidine, DNA (21-MER), DNA (27-MER), ...
著者Li, L, Zhang, Y.
登録日2023-09-04
公開日2024-07-24
実験手法X-RAY DIFFRACTION (3.165 Å)
主引用文献Nanopore tweezers show fractional-nucleotide translocation in sequence-dependent pausing by RNA polymerase.
Proc.Natl.Acad.Sci.USA, 121, 2024
3MUW
DownloadVisualize
BU of 3muw by Molmil
Pseudo-atomic structure of the E2-E1 protein shell in Sindbis virus
分子名称: Structural polyprotein
著者Li, L, Jose, J, Xiang, Y, Kuhn, R.J, Rossmann, M.G.
登録日2010-05-03
公開日2010-11-24
最終更新日2024-02-21
実験手法ELECTRON MICROSCOPY (9 Å)
主引用文献Structural changes of envelope proteins during alphavirus fusion.
Nature, 468, 2010
8WOY
DownloadVisualize
BU of 8woy by Molmil
Cryo-EM structure of SARS-CoV-2 Omicron BA.4/5 RBD in complex with rabbit ACE2 (local refinement)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme, Spike protein S1, ...
著者Li, L.J, Shi, K.Y, Yu, G.H, Gao, G.F.
登録日2023-10-08
公開日2023-12-13
最終更新日2024-02-28
実験手法ELECTRON MICROSCOPY (3.14 Å)
主引用文献Structural basis of increased binding affinities of spikes from SARS-CoV-2 Omicron variants to rabbit and hare ACE2s reveals the expanding host tendency.
Mbio, 15, 2024
8WOZ
DownloadVisualize
BU of 8woz by Molmil
Cryo-EM structure of SARS-CoV RBD in complex with rabbit ACE2
分子名称: Angiotensin-converting enzyme, Spike protein S1, ZINC ION
著者Li, L.J, Shi, K.Y, Yu, G.H, Gao, G.F.
登録日2023-10-08
公開日2023-12-13
最終更新日2024-10-30
実験手法ELECTRON MICROSCOPY (3.25 Å)
主引用文献Structural basis of increased binding affinities of spikes from SARS-CoV-2 Omicron variants to rabbit and hare ACE2s reveals the expanding host tendency.
Mbio, 15, 2024
8WOX
DownloadVisualize
BU of 8wox by Molmil
Cryo-EM structure of SARS-CoV-2 prototype RBD in complex with rabbit ACE2 (local refinement)
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme, Spike protein S1, ...
著者Li, L.J, Shi, K.Y, Yu, G.H, Gao, G.F.
登録日2023-10-08
公開日2023-12-13
最終更新日2024-02-28
実験手法ELECTRON MICROSCOPY (2.75 Å)
主引用文献Structural basis of increased binding affinities of spikes from SARS-CoV-2 Omicron variants to rabbit and hare ACE2s reveals the expanding host tendency.
Mbio, 15, 2024
8W8O
DownloadVisualize
BU of 8w8o by Molmil
Thermus thermophilus initiation complex in the half-translocated state
分子名称: DNA (21-MER), DNA (27-MER), DNA-directed RNA polymerase subunit alpha, ...
著者Li, L, Zhang, Y.
登録日2023-09-04
公開日2024-07-24
実験手法X-RAY DIFFRACTION (2.512 Å)
主引用文献Nanopore tweezers show fractional-nucleotide translocation in sequence-dependent pausing by RNA polymerase.
Proc.Natl.Acad.Sci.USA, 121, 2024
3DAN
DownloadVisualize
BU of 3dan by Molmil
Crystal Structure of Allene oxide synthase
分子名称: Cytochrome P450 74A2, PROTOPORPHYRIN IX CONTAINING FE
著者Li, L, Wang, X.
登録日2008-05-29
公開日2008-09-23
最終更新日2024-02-21
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Modes of heme binding and substrate access for cytochrome P450 CYP74A revealed by crystal structures of allene oxide synthase.
Proc.Natl.Acad.Sci.Usa, 105, 2008
3DBM
DownloadVisualize
BU of 3dbm by Molmil
Crystal Structure of Allene oxide synthase
分子名称: (9E,11E,13S)-13-hydroxyoctadeca-9,11-dienoic acid, Cytochrome P450 74A2, PROTOPORPHYRIN IX CONTAINING FE
著者Li, L, Wang, X.
登録日2008-06-01
公開日2008-09-23
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Modes of heme binding and substrate access for cytochrome P450 CYP74A revealed by crystal structures of allene oxide synthase.
Proc.Natl.Acad.Sci.Usa, 105, 2008
3IPZ
DownloadVisualize
BU of 3ipz by Molmil
Crystal structure of Arabidopsis monothiol glutaredoxin AtGRXcp
分子名称: Monothiol glutaredoxin-S14, chloroplastic
著者Li, L, Cheng, N, Wang, X.
登録日2009-08-18
公開日2010-06-16
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structure of Arabidopsis chloroplastic monothiol glutaredoxin AtGRXcp.
Acta Crystallogr.,Sect.D, 66, 2010
5VNQ
DownloadVisualize
BU of 5vnq by Molmil
Neutron crystallographic structure of perdeuterated T4 lysozyme cysteine-free pseudo-wild type at cryogenic temperature
分子名称: CHLORIDE ION, Endolysin
著者Li, L, Shukla, S, Meilleur, F, Standaert, R.F, Pierce, J, Myles, D.A.A, Cuneo, M.J.
登録日2017-05-01
公開日2017-07-26
最終更新日2023-10-04
実験手法NEUTRON DIFFRACTION (2.2 Å)
主引用文献Neutron crystallographic studies of T4 lysozyme at cryogenic temperature.
Protein Sci., 26, 2017
5VNR
DownloadVisualize
BU of 5vnr by Molmil
X-ray structure of perdeuterated T4 lysozyme cysteine-free pseudo-wild type at cryogenic temperature
分子名称: 2-HYDROXYETHYL DISULFIDE, CHLORIDE ION, Endolysin, ...
著者Li, L, Shukla, S, Meilleur, F, Standaert, R.F, Pierce, J, Myles, D.A.A, Cuneo, M.J.
登録日2017-05-01
公開日2017-07-26
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.631 Å)
主引用文献Neutron crystallographic studies of T4 lysozyme at cryogenic temperature.
Protein Sci., 26, 2017

226707

件を2024-10-30に公開中

PDB statisticsPDBj update infoContact PDBjnumon