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PDB: 178 件

3M6R
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BU of 3m6r by Molmil
Crystal structure of Arabidopsis thaliana peptide deformylase 1B (AtPDF1B) G41M mutant in complex with actinonin
分子名称: ACTINONIN, Peptide deformylase 1B, ZINC ION
著者Fieulaine, S, Meinnel, T, Giglione, C.
登録日2010-03-16
公開日2011-03-30
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Trapping conformational states along ligand-binding dynamics of peptide deformylase: the impact of induced fit on enzyme catalysis
Plos Biol., 9, 2011
3M6Q
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BU of 3m6q by Molmil
Crystal structure of Arabidopsis thaliana peptide deformylase 1B (AtPDF1B) G41Q mutant in complex with actinonin
分子名称: ACTINONIN, Peptide deformylase 1B, ZINC ION
著者Fieulaine, S, Meinnel, T, Giglione, C.
登録日2010-03-16
公開日2011-03-30
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Trapping conformational states along ligand-binding dynamics of peptide deformylase: the impact of induced fit on enzyme catalysis
Plos Biol., 9, 2011
3M6O
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BU of 3m6o by Molmil
Crystal structure of Arabidopsis thaliana peptide deformylase 1B (AtPDF1B)
分子名称: Peptide deformylase 1B, ZINC ION
著者Fieulaine, S, Meinnel, T, Giglione, C.
登録日2010-03-16
公開日2011-03-30
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Trapping conformational states along ligand-binding dynamics of peptide deformylase: the impact of induced fit on enzyme catalysis
Plos Biol., 9, 2011
7NQC
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BU of 7nqc by Molmil
Calmodulin extracts the Ras family protein RalA from lipid bilayers by engagement with two membrane targeting motifs
分子名称: CALCIUM ION, Calmodulin-1, PRO-ASN-GLY-LYS-LYS-LYS-ARG-LYS-SER-LEU-ALA-LYS-ARG-ILE-ARG-GLU-ARG-CMF, ...
著者Chamberlain, S.G, Owen, D, Mott, H.R.
登録日2021-03-01
公開日2021-09-22
実験手法SOLUTION NMR
主引用文献Calmodulin extracts the Ras family protein RalA from lipid bilayers by engagement with two membrane-targeting motifs.
Proc.Natl.Acad.Sci.USA, 118, 2021
6YPT
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BU of 6ypt by Molmil
X-ray structure of Turnip Yellow Mosaic Virus PRO/DUB in complex with Ubiquitin
分子名称: METHYL 4-AMINOBUTANOATE, Polyubiquitin-C, RNA replicase polyprotein
著者Fieulaine, S, Bressanelli, S.
登録日2020-04-16
公開日2020-08-05
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (3.663 Å)
主引用文献X-ray structure of Turnip Yellow Mosaic Virus PRO/DUB in complex with Ubiquitin
J.Biol.Chem., 2020
5MTE
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Crystal structure of PDF from the Vibrio parahaemolyticus bacteriophage VP16T in complex with actinonin - crystal form II
分子名称: ACTINONIN, NICKEL (II) ION, Putative uncharacterized protein orf60T, ...
著者Fieulaine, S, Grzela, R, Giglione, C, Meinnel, T.
登録日2017-01-09
公開日2017-11-29
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Peptide deformylases from Vibrio parahaemolyticus phage and bacteria display similar deformylase activity and inhibitor binding clefts.
Biochim. Biophys. Acta, 1866, 2018
5JF0
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BU of 5jf0 by Molmil
Crystal structure of type 2 PDF from Streptococcus agalactiae in complex with tripeptide Met-Ala-Arg
分子名称: ACETATE ION, MET-ALA-ARG, NICKEL (II) ION, ...
著者Fieulaine, S, Giglione, C, Meinnel, T.
登録日2016-04-19
公開日2016-11-30
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献A unique peptide deformylase platform to rationally design and challenge novel active compounds.
Sci Rep, 6, 2016
3I73
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Structural characterization for the nucleotide binding ability of subunit A with ADP of the A1AO ATP synthase
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, A-TYPE ATP SYNTHASE CATALYTIC SUBUNIT A, ...
著者Manimekalai, S.M.S, Kumar, A, Balakrishna, A.M, Gruber, G.
登録日2009-07-08
公開日2010-01-12
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Nucleotide binding states of subunit A of the A-ATP synthase and the implication of P-loop switch in evolution.
J.Mol.Biol., 396, 2010
3I72
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BU of 3i72 by Molmil
Structural characterization for the nucleotide binding ability of subunit A with SO4 of the A1AO ATP synthase
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, A-TYPE ATP SYNTHASE CATALYTIC SUBUNIT A, ...
著者Manimekalai, S.M.S, Kumar, A, Balakrishna, A.M, Gruber, G.
登録日2009-07-07
公開日2010-01-12
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.47 Å)
主引用文献Nucleotide binding states of subunit A of the A-ATP synthase and the implication of P-loop switch in evolution.
J.Mol.Biol., 396, 2010
5JF4
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Crystal structure of type 2 PDF from Streptococcus agalactiae in complex with inhibitor AT019
分子名称: (3R)-3-{3-[(1-benzofuran-3-yl)methyl]-1,2,4-oxadiazol-5-yl}-4-cyclopentyl-N-hydroxybutanamide, ACETATE ION, IMIDAZOLE, ...
著者Fieulaine, S, Giglione, C, Meinnel, T.
登録日2016-04-19
公開日2016-11-30
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献A unique peptide deformylase platform to rationally design and challenge novel active compounds.
Sci Rep, 6, 2016
5JEX
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BU of 5jex by Molmil
Crystal structure of type 2 PDF from Streptococcus agalactiae, crystallized in imidazole buffer
分子名称: IMIDAZOLE, Peptide deformylase, ZINC ION
著者Fieulaine, S, Giglione, C, Meinnel, T.
登録日2016-04-19
公開日2016-11-30
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献A unique peptide deformylase platform to rationally design and challenge novel active compounds.
Sci Rep, 6, 2016
5JF3
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BU of 5jf3 by Molmil
Crystal structure of type 2 PDF from Streptococcus agalactiae in complex with inhibitor AT018
分子名称: ACETATE ION, IMIDAZOLE, Peptide deformylase, ...
著者Fieulaine, S, Giglione, C, Meinnel, T.
登録日2016-04-19
公開日2016-11-30
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献A unique peptide deformylase platform to rationally design and challenge novel active compounds.
Sci Rep, 6, 2016
5JEY
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BU of 5jey by Molmil
Crystal structure of type 2 PDF from Streptococcus agalactiae, crystallized in cacodylate buffer
分子名称: NICKEL (II) ION, Peptide deformylase
著者Fieulaine, S, Giglione, C, Meinnel, T.
登録日2016-04-19
公開日2016-11-30
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献A unique peptide deformylase platform to rationally design and challenge novel active compounds.
Sci Rep, 6, 2016
5JF6
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BU of 5jf6 by Molmil
Crystal structure of type 2 PDF from Streptococcus agalactiae in complex with inhibitor 6b (AB47)
分子名称: 2-(5-bromo-1H-indol-3-yl)-N-hydroxyacetamide, ACETATE ION, Peptide deformylase, ...
著者Fieulaine, S, Giglione, C, Meinnel, T, Hamiche, K.
登録日2016-04-19
公開日2016-11-30
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献A unique peptide deformylase platform to rationally design and challenge novel active compounds.
Sci Rep, 6, 2016
5JEZ
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BU of 5jez by Molmil
Crystal structure of type 2 PDF from Streptococcus agalactiae in complex with tripeptide Met-Ala-Ser
分子名称: ACETATE ION, Met-Ala-Ser, Peptide deformylase, ...
著者Fieulaine, S, Giglione, C, Meinnel, T.
登録日2016-04-19
公開日2016-11-30
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献A unique peptide deformylase platform to rationally design and challenge novel active compounds.
Sci Rep, 6, 2016
5JF7
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BU of 5jf7 by Molmil
Crystal structure of type 2 PDF from Streptococcus agalactiae in complex with inhibitor SMP289
分子名称: 2-(3-benzyl-5-bromo-1H-indol-1-yl)-N-hydroxyacetamide, ACETATE ION, IMIDAZOLE, ...
著者Fieulaine, S, Giglione, C, Meinnel, T, Hamiche, K.
登録日2016-04-19
公開日2016-11-30
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献A unique peptide deformylase platform to rationally design and challenge novel active compounds.
Sci Rep, 6, 2016
5JF8
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BU of 5jf8 by Molmil
Crystal structure of type 2 PDF from Streptococcus agalactiae in complex with inhibitor RAS358 (21)
分子名称: ACETATE ION, IMIDAZOLE, Peptide deformylase, ...
著者Fieulaine, S, Giglione, C, Meinnel, T.
登録日2016-04-19
公開日2016-11-30
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献A unique peptide deformylase platform to rationally design and challenge novel active compounds.
Sci Rep, 6, 2016
5JF2
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BU of 5jf2 by Molmil
Crystal structure of type 2 PDF from Streptococcus agalactiae in complex with inhibitor AT002
分子名称: (3R)-3-{3-[(4-fluorophenyl)methyl]-1,2,4-oxadiazol-5-yl}-N-hydroxyheptanamide, ACETATE ION, IMIDAZOLE, ...
著者Fieulaine, S, Giglione, C, Meinnel, T, Hamiche, K.
登録日2016-04-19
公開日2016-11-30
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献A unique peptide deformylase platform to rationally design and challenge novel active compounds.
Sci Rep, 6, 2016
5A7Q
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BU of 5a7q by Molmil
Crystal structure of human JMJD2A in complex with compound 30
分子名称: 1,2-ETHANEDIOL, 2-(5-azanyl-2-oxidanyl-phenyl)pyridine-4-carboxylic acid, CHLORIDE ION, ...
著者Velupillai, S, Krojer, T, Gileadi, C, Johansson, C, Korczynska, M, Le, D.D, Younger, N, Gregori-Puigjane, E, Tumber, A, Iwasa, E, Pollock, S.B, Ortiz Torres, I, Kopec, J, Dixon-Clarke, S, MacKenzie, A, Nowak, R, von Delft, F, Arrowsmith, C.H, Bountra, C, Edwards, A, Shoichet, B.K, Fujimori, D.G, Oppermann, U.
登録日2015-07-09
公開日2016-01-13
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Docking and Linking of Fragments to Discover Jumonji Histone Demethylase Inhibitors.
J.Med.Chem., 59, 2016
5JF1
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BU of 5jf1 by Molmil
Crystal structure of type 2 PDF from Streptococcus agalactiae in complex with actinonin
分子名称: ACETATE ION, ACTINONIN, Peptide deformylase, ...
著者Fieulaine, S, Giglione, C, Meinnel, T.
登録日2016-04-19
公開日2016-11-30
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献A unique peptide deformylase platform to rationally design and challenge novel active compounds.
Sci Rep, 6, 2016
5JF5
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BU of 5jf5 by Molmil
Crystal structure of type 2 PDF from Streptococcus agalactiae in complex with inhibitor AT020
分子名称: (3R)-3-{3-[(2H-1,3-benzodioxol-5-yl)methyl]-1,2,4-oxadiazol-5-yl}-4-cyclopentyl-N-hydroxybutanamide, ACETATE ION, IMIDAZOLE, ...
著者Fieulaine, S, Giglione, C, Meinnel, T.
登録日2016-04-19
公開日2016-11-30
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献A unique peptide deformylase platform to rationally design and challenge novel active compounds.
Sci Rep, 6, 2016
3I4L
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BU of 3i4l by Molmil
Structural characterization for the nucleotide binding ability of subunit A with AMP-PNP of the A1AO ATP synthase
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, A-TYPE ATP SYNTHASE CATALYTIC SUBUNIT A, ...
著者Manimekalai, S.M.S, Kumar, A, Balakrishna, A.M, Jeyakanthan, J, Gruber, G.
登録日2009-07-01
公開日2010-01-12
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Nucleotide binding states of subunit A of the A-ATP synthase and the implication of P-loop switch in evolution.
J.Mol.Biol., 396, 2010
3EIU
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BU of 3eiu by Molmil
A second transient position of ATP on its trail to the nucleotide-binding site of subunit B of the motor protein A1Ao ATP synthase
分子名称: 4-(2-AMINOETHYL)BENZENESULFONYL FLUORIDE, ADENOSINE-5'-TRIPHOSPHATE, V-type ATP synthase beta chain
著者Manimekalai, S.M.S, Kumar, A, Balakrishna, A.M, Gruber, G.
登録日2008-09-17
公開日2009-02-10
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3.43 Å)
主引用文献A second transient position of ATP on its trail to the nucleotide-binding site of subunit B of the motor protein A(1)A(O) ATP synthase
J.Struct.Biol., 166, 2009
2UZ2
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BU of 2uz2 by Molmil
Crystal structure of Xenavidin
分子名称: ACETATE ION, BIOTIN, XENAVIDIN
著者Helppolainen, S.H, Maatta, J.A.E, Airenne, T.T, Johnson, M.S, Kulomaa, M.S, Nordlund, H.R.
登録日2007-04-24
公開日2008-06-03
最終更新日2017-06-28
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural and Functional Characteristics of Xenavidin, the First Frog Avidin from Xenopus Tropicalis.
Bmc Struct.Biol., 9, 2009
5MTC
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BU of 5mtc by Molmil
Crystal structure of PDF from the Vibrio parahaemolyticus bacteriophage VP16T - crystal form I
分子名称: NICKEL (II) ION, Putative uncharacterized protein orf60T, ZINC ION
著者Fieulaine, S, Grzela, R, Giglione, C, Meinnel, T.
登録日2017-01-09
公開日2017-09-20
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献The C-terminal residue of phage Vp16 PDF, the smallest peptide deformylase, acts as an offset element locking the active conformation.
Sci Rep, 7, 2017

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