PDB Search results for query - Protein Data Bank Japan

PDB: 318 results

Structure of Biotin Carboxyl Carrier Protein (74Val start) from Pyrococcus horikoshi OT3 Ligand Free Form I
Descriptor:	methylmalonyl-CoA decarboxylase gamma chain
Authors:	Bagautdinov, B, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:	2005-10-31
Release date:	2006-05-01
Last modified:	2023-10-25
Method:	X-RAY DIFFRACTION (1.55 Å)
Cite:	Protein biotinylation visualized by a complex structure of biotin protein ligase with a substrate J.Biol.Chem., 283, 2008

1UB3

Crystal Structure of Tetrameric Structure of Aldolase from thermus thermophilus HB8
Descriptor:	1-HYDROXY-PENTANE-3,4-DIOL-5-PHOSPHATE, Aldolase protein
Authors:	Lokanath, N.K, Miyano, M, Yokoyama, S, Kuramitsu, S, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:	2003-03-28
Release date:	2003-04-08
Last modified:	2023-12-27
Method:	X-RAY DIFFRACTION (1.4 Å)
Cite:	Structure of aldolase from Thermus thermophilus HB8 showing the contribution of oligomeric state to thermostability. Acta Crystallogr.,Sect.D, 60, 2004

2CUN

Crystal structure of Phosphoglycerate Kinase from Pyrococcus horikoshii OT3
Descriptor:	(4S)-2-METHYL-2,4-PENTANEDIOL, 3-PHOSPHOGLYCERIC ACID, CHLORIDE ION, ...
Authors:	Mizutani, H, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:	2005-05-27
Release date:	2005-06-14
Last modified:	2023-10-25
Method:	X-RAY DIFFRACTION (2.1 Å)
Cite:	Crystal structure of Phosphoglycerate Kinase from Pyrococcus horikoshii OT3 To be Published

2D8D

Structure of Chorismate Mutase (Form I) from Thermus Thermophilus HB8
Descriptor:	CHLORIDE ION, phospho-2-dehydro-3-deoxyheptonate aldolase/chorismate mutase
Authors:	Bagautdinov, B, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:	2005-12-02
Release date:	2006-06-02
Last modified:	2023-10-25
Method:	X-RAY DIFFRACTION (1.15 Å)
Cite:	Structure of Chorismate Mutase from Thermus Thermophilus HB8 To be Published

2D29

Structural study on project ID TT0172 from Thermus thermophilus HB8
Descriptor:	FLAVIN-ADENINE DINUCLEOTIDE, acyl-CoA dehydrogenase
Authors:	Shimizu, K, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:	2005-09-05
Release date:	2006-03-05
Last modified:	2023-10-25
Method:	X-RAY DIFFRACTION (1.65 Å)
Cite:	Structural study on project ID TT0172 from Thermus thermophilus HB8 To be Published

2D3K

Structural study on Project ID PH1539 from Pyrococcus horikoshii OT3
Descriptor:	Peptidyl-tRNA hydrolase, ZINC ION
Authors:	Shimizu, K, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:	2005-09-29
Release date:	2006-03-29
Last modified:	2023-10-25
Method:	X-RAY DIFFRACTION (1.9 Å)
Cite:	Structure of peptidyl-tRNA hydrolase 2 from Pyrococcus horikoshii OT3: insight into the functional role of its dimeric state. Acta Crystallogr.,Sect.D, 64, 2008

2D4E

Crystal Structure of the HpcC from Thermus Thermophilus HB8
Descriptor:	5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase, GLYCEROL, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, ...
Authors:	Mizutani, H, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:	2005-10-18
Release date:	2006-04-18
Last modified:	2023-10-25
Method:	X-RAY DIFFRACTION (2.1 Å)
Cite:	Crystal Structure of the HpcC from Thermus Thermophilus HB8 To be Published

2D1Y

Crystal structure of TT0321 from Thermus thermophilus HB8
Descriptor:	NICOTINAMIDE-ADENINE-DINUCLEOTIDE, hypothetical protein TT0321
Authors:	Asada, Y, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:	2005-09-02
Release date:	2006-03-02
Last modified:	2023-10-25
Method:	X-RAY DIFFRACTION (1.65 Å)
Cite:	Biochemical and structural characterization of a short-chain dehydrogenase/reductase of Thermus thermophilus HB8: a hyperthermostable aldose-1-dehydrogenase with broad substrate specificity. Chem.Biol.Interact., 178, 2009

2D5C

Crystal Structure of Shikimate 5-Dehydrogenase (AroE) from Thermus Thermophilus HB8 in complex with shikimate
Descriptor:	(3R,4S,5R)-3,4,5-TRIHYDROXYCYCLOHEX-1-ENE-1-CARBOXYLIC ACID, SULFATE ION, shikimate 5-dehydrogenase
Authors:	Bagautdinov, B, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:	2005-10-31
Release date:	2006-05-01
Last modified:	2023-10-25
Method:	X-RAY DIFFRACTION (1.65 Å)
Cite:	Crystal Structures of Shikimate Dehydrogenase AroE from Thermus thermophilus HB8 and its Cofactor and Substrate Complexes: Insights into the Enzymatic Mechanism J.Mol.Biol., 373, 2007

2D8A

Crystal Structure of PH0655 from Pyrococcus horikoshii OT3
Descriptor:	NICOTINAMIDE-ADENINE-DINUCLEOTIDE, Probable L-threonine 3-dehydrogenase, ZINC ION
Authors:	Asada, Y, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:	2005-12-02
Release date:	2006-06-02
Last modified:	2024-10-23
Method:	X-RAY DIFFRACTION (2.05 Å)
Cite:	Crystal Structure of PH0655 from Pyrococcus horikoshii OT3 To be Published

2DCL

Structure of PH1503 protein from Pyrococcus Horikoshii OT3
Descriptor:	ADENOSINE MONOPHOSPHATE, Hypothetical UPF0166 protein PH1503
Authors:	Bagautdinov, B, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:	2006-01-08
Release date:	2006-07-08
Last modified:	2023-10-25
Method:	X-RAY DIFFRACTION (2.28 Å)
Cite:	Crystal structure of PH1503 protein from Pyrococcus Horikoshii OT3 To be Published

2DC4

Structure of PH1012 protein from Pyrococcus Horikoshii OT3
Descriptor:	165aa long hypothetical protein, CHLORIDE ION
Authors:	Bagautdinov, B, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:	2005-12-28
Release date:	2006-06-28
Last modified:	2023-10-25
Method:	X-RAY DIFFRACTION (1.65 Å)
Cite:	Crystal structure of PH1012 protein from Pyrococcus Horikoshii OT3 To be Published

2DEQ

Crystal Structure Of Biotin Protein Ligase From Pyrococcus Horikoshii OT3 in complex with Biotinyl-5'-AMP, K111G mutation
Descriptor:	235aa long hypothetical biotin--[acetyl-CoA-carboxylase] ligase, BIOTINYL-5-AMP
Authors:	Bagautdinov, B, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:	2006-02-16
Release date:	2006-08-16
Last modified:	2023-10-25
Method:	X-RAY DIFFRACTION (1.85 Å)
Cite:	Ligand Structures Of Biotin Protein Ligase From Pyrococcus Horikoshii OT3 To be Published

2DTI

Crystal Structure Of Biotin Protein Ligase From Pyrococcus Horikoshii OT3 in Complex with Biotinyl-5'-AMP, Pyrophosphate and Mn(2+)
Descriptor:	235aa long hypothetical biotin-[acetyl-CoA-carboxylase] ligase, BIOTINYL-5-AMP, MANGANESE (II) ION, ...
Authors:	Bagautdinov, B, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:	2006-07-12
Release date:	2007-01-12
Last modified:	2023-10-25
Method:	X-RAY DIFFRACTION (2.2 Å)
Cite:	Ligand Structures Of Biotin Protein Ligase From Pyrococcus Horikoshii OT3 To be Published

2DVE

Crystal Structure Of Biotin Protein Ligase From Pyrococcus Horikoshii OT3 in Complex with Biotinyl-5'-AMP, Mutation Arg51Ala
Descriptor:	BIOTINYL-5-AMP, Biotin Protein Ligase
Authors:	Bagautdinov, B, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:	2006-07-31
Release date:	2007-01-31
Last modified:	2023-10-25
Method:	X-RAY DIFFRACTION (1.6 Å)
Cite:	Ligand Structures of Biotin Protein Ligase From Pyrococcus Horikoshii OT3 To be Published

2DEC

Crystal Structure of the PH0510 protein from Pyrococcus horikoshii OT3
Descriptor:	1,2-ETHANEDIOL, 325aa long hypothetical protein, SODIUM ION
Authors:	Mizutani, H, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:	2006-02-10
Release date:	2006-08-10
Last modified:	2023-10-25
Method:	X-RAY DIFFRACTION (1.7 Å)
Cite:	Crystal Structure of the PH0510 protein from Pyrococcus horikoshii OT3 To be Published

2DF8

Crystal Structure of the PH0510 protein from Pyrococcus horikoshii OT3 in complex with beta-D-Fructopyranose-1-phosphate
Descriptor:	1,2-ETHANEDIOL, 1-O-phosphono-beta-D-fructopyranose, 325aa long hypothetical protein
Authors:	Mizutani, H, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:	2006-02-27
Release date:	2006-08-27
Last modified:	2023-10-25
Method:	X-RAY DIFFRACTION (1.5 Å)
Cite:	Crystal Structure of the PH0510 protein from Pyrococcus horikoshii OT3 To be Published

2DR3

Crystal Structure of RecA superfamily ATPase PH0284 from Pyrococcus horikoshii OT3
Descriptor:	ADENOSINE-5'-DIPHOSPHATE, UPF0273 protein PH0284
Authors:	Bagautdinov, B, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:	2006-06-06
Release date:	2006-12-06
Last modified:	2023-10-25
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	Crystal Structure of RecA superfamily ATPase PH0284 from Pyrococcus horikoshii OT3 To be Published

2DTH

The Crystal Structure of the Orthorhombic Form of Biotin Protein Ligase From Pyrococcus Horikoshii OT3 in Complex with Biotin and ADP
Descriptor:	235aa long hypothetical biotin--[acetyl-CoA-carboxylase] ligase, ADENOSINE-5'-DIPHOSPHATE, BIOTIN
Authors:	Bagautdinov, B, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:	2006-07-12
Release date:	2007-01-12
Last modified:	2023-10-25
Method:	X-RAY DIFFRACTION (1.95 Å)
Cite:	Ligand Structures Of Biotin Protein Ligase From Pyrococcus Horikoshii Ot3 To be Published

2DPN

Crystal Structure of the glycerol kinase from Thermus thermophilus HB8
Descriptor:	Glycerol kinase
Authors:	Asada, Y, Sugahara, M, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:	2006-05-12
Release date:	2006-11-12
Last modified:	2023-10-25
Method:	X-RAY DIFFRACTION (2.8 Å)
Cite:	Nucleant-mediated protein crystallization with the application of microporous synthetic zeolites. Acta Crystallogr.,Sect.D, 64, 2008

2DKG

Crystal Structure Of Biotin Protein Ligase From Pyrococcus Horikoshii OT3 in Complex with Biotinyl-5'-AMP, Pyrophosphate and Mg(2+)
Descriptor:	235aa long hypothetical biotin-[acetyl-CoA-carboxylase] ligase, BIOTINYL-5-AMP, MAGNESIUM ION, ...
Authors:	Bagautdinov, B, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:	2006-04-11
Release date:	2006-10-11
Last modified:	2023-10-25
Method:	X-RAY DIFFRACTION (2 Å)
Cite:	Ligand Structures Of Biotin Protein Ligase From Pyrococcus Horikoshii Ot3 To be Published

2DTT

Crystal structure of 6-pyruvoyl tetrahydrobiopterin synthase from Pyrococcus horikoshii OT3 complexed with (1'R,2'S)-biopterin
Descriptor:	5,6,7,8-TETRAHYDROBIOPTERIN, Hypothetical protein PH0634
Authors:	Bagautdinov, B, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:	2006-07-15
Release date:	2007-01-15
Last modified:	2023-10-25
Method:	X-RAY DIFFRACTION (2.2 Å)
Cite:	Crystal structure of 6-pyruvoyl tetrahydrobiopterin synthase from Pyrococcus horikoshii OT3 To be Published

2DV3

Crystal structure of Leu65 to Arg mutant of Diphthine synthase
Descriptor:	CHLORIDE ION, FORMIC ACID, GLYCEROL, ...
Authors:	Mizutani, H, Matsuura, Y, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:	2006-07-28
Release date:	2007-01-28
Last modified:	2023-10-25
Method:	X-RAY DIFFRACTION (1.9 Å)
Cite:	Crystal structure of diphthine synthase from Pyrococcus horikoshii OT3 To be Published

2DFU

Crystal structure of the 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase from Thermus Thermophilus HB8
Descriptor:	probable 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase
Authors:	Mizutani, H, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:	2006-03-03
Release date:	2006-09-03
Last modified:	2023-10-25
Method:	X-RAY DIFFRACTION (2.2 Å)
Cite:	Crystal structure of the 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase from Thermus Thermophilus HB8 To be Published

2DPL

Crystal Structure of the GMP synthase from Pyrococcus horikoshii OT3
Descriptor:	GMP synthase [glutamine-hydrolyzing] subunit B
Authors:	Asada, Y, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:	2006-05-12
Release date:	2006-11-12
Last modified:	2023-10-25
Method:	X-RAY DIFFRACTION (1.43 Å)
Cite:	Crystal Structure of the GMP synthase from Pyrococcus horikoshii OT3 To be Published

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Total results:	318
Displayed results:	25
Sorted by:	Hit score (from highest)
Deposition authors:	"Kunishima, N"