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PDB: 220 件
5EHH
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Structure of human DPP3 in complex with endomorphin-2.
分子名称: Dipeptidyl peptidase 3, Endomorphin-2, MAGNESIUM ION, ...
著者Kumar, P, Reithofer, V, Reisinger, M, Pavkov-Keller, T, Wallner, S, Macheroux, P, Gruber, K.
登録日2015-10-28
公開日2016-04-13
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.38 Å)
主引用文献Substrate complexes of human dipeptidyl peptidase III reveal the mechanism of enzyme inhibition.
Sci Rep, 6, 2016
3GZX
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BU of 3gzx by Molmil
Crystal Structure of the Biphenyl Dioxygenase in complex with Biphenyl from Comamonas testosteroni Sp. Strain B-356
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, BIPHENYL, Biphenyl dioxygenase subunit alpha, ...
著者Kumar, P, Colbert, C.L, Bolin, J.T.
登録日2009-04-08
公開日2010-05-05
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.58 Å)
主引用文献Structural Characterization of Pandoraea pnomenusa B-356 Biphenyl Dioxygenase Reveals Features of Potent Polychlorinated Biphenyl-Degrading Enzymes
Plos One, 8, 2013
5E2Q
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BU of 5e2q by Molmil
Structure of human DPP3 in complex with angiotensin-II
分子名称: Dipeptidyl peptidase 3, MAGNESIUM ION, POTASSIUM ION, ...
著者Kumar, P, Reisinger, M, Reithofer, V, Gruber, K.
登録日2015-10-01
公開日2016-04-13
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (2.404 Å)
主引用文献Substrate complexes of human dipeptidyl peptidase III reveal the mechanism of enzyme inhibition.
Sci Rep, 6, 2016
1I6B
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BU of 1i6b by Molmil
STRUCTURE OF EQUINE APOLACTOFERRIN AT 3.2 A RESOLUTION USING CRYSTALS GROWN AT 303K
分子名称: LACTOTRANSFERRIN
著者Kumar, P, Yadav, S, Singh, T.P.
登録日2001-03-02
公開日2002-02-13
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (3.2 Å)
主引用文献Crystal structure of equine apolactoferrin at 303 K providing further evidence of closed conformations of N and C lobes.
Acta Crystallogr.,Sect.D, 58, 2002
4R62
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BU of 4r62 by Molmil
Structure of Rad6~Ub
分子名称: ACETATE ION, Ubiquitin-40S ribosomal protein S27a, Ubiquitin-conjugating enzyme E2 2
著者Kumar, P, Wolberger, C.
登録日2014-08-22
公開日2015-09-02
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.28 Å)
主引用文献Role of a non-canonical surface of Rad6 in ubiquitin conjugating activity.
Nucleic Acids Res., 43, 2015
1JW1
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BU of 1jw1 by Molmil
Crystallization and structure determination of goat lactoferrin at 4.0 resolution: A new form of packing in lactoferrins with a high solvent content in crystals
分子名称: FE (III) ION, LACTOFERRIN
著者Kumar, P, Yadav, S, Singh, T.P.
登録日2001-09-02
公開日2003-04-29
最終更新日2011-07-13
実験手法X-RAY DIFFRACTION (4 Å)
主引用文献Crystallization and structure determonation of goat lactoferrin at 4.0A resolution: A new form of packing in lactoferrins with a high solvent content in crystals
INDIAN J.BIOCHEM.BIOPHYS., 39, 2002
8BFE
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BU of 8bfe by Molmil
A dimeric de novo coiled-coil assembly: PK-2 (CC-TypeN-LaUbUcLd)
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, CC-TypeN-LaUbUcLd, ...
著者Kumar, P, Paterson, N.G, Woolfson, D.N.
登録日2022-10-25
公開日2022-11-23
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献De novo design of discrete, stable 3 10 -helix peptide assemblies.
Nature, 607, 2022
8BFD
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BU of 8bfd by Molmil
Racemic structure of PK-7 (310HD-U2U5)
分子名称: 310HD-U2U5, D-310HD-U2U5, DI(HYDROXYETHYL)ETHER, ...
著者Kumar, P, Paterson, N.G, Woolfson, D.N.
登録日2022-10-25
公開日2022-11-23
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献De novo design of discrete, stable 3 10 -helix peptide assemblies.
Nature, 607, 2022
8B45
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Structure of CC-Tri with Aib@b,c: CC-Tri-(UbUc)4
分子名称: 1,2-ETHANEDIOL, CC-Tri-(UbUc)4, SODIUM ION, ...
著者Kumar, P, Martin, F.J.O, Dawson, W.M, Zieleniewski, F, Woolfson, D.N.
登録日2022-09-19
公開日2023-09-27
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structure of CC-Tri with Aib@b,c: CC-Tri-(UbUc)4
To Be Published
3BO8
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BU of 3bo8 by Molmil
The High Resolution Crystal Structure of HLA-A1 Complexed with the MAGE-A1 Peptide
分子名称: Beta-2-microglobulin, GLYCEROL, HLA class I histocompatibility antigen, ...
著者Kumar, P, Vahedi-Faridi, A, Saenger, W, Ziegler, A, Uchanska-Ziegler, B.
登録日2007-12-17
公開日2008-12-23
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Conformational changes within the HLA-A1:MAGE-A1 complex induced by binding of a recombinant antibody fragment with TCR-like specificity
Protein Sci., 18, 2009
3LS6
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Crystal structure of 3,4-Dihydroxy-2-butanone 4-phosphate synthase in complex with sulfate and zinc
分子名称: 3,4-Dihydroxy-2-butanone 4-phosphate synthase, GLYCEROL, MAGNESIUM ION, ...
著者Kumar, P, Karthikeyan, S.
登録日2010-02-12
公開日2010-09-15
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.86 Å)
主引用文献Potential anti-bacterial drug target: structural characterization of 3,4-dihydroxy-2-butanone-4-phosphate synthase from Salmonella typhimurium LT2.
Proteins, 78, 2010
3LQU
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Crystal structure of 3,4-Dihydroxy-2-butanone 4-phosphate synthase complexed with Ribulose-5 phosphate
分子名称: 3,4-dihydroxy-2-butanone 4-phosphate synthase, 5-O-phosphono-D-xylulose
著者Kumar, P, Karthikeyan, S.
登録日2010-02-10
公開日2010-09-15
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.522 Å)
主引用文献Potential anti-bacterial drug target: structural characterization of 3,4-dihydroxy-2-butanone-4-phosphate synthase from Salmonella typhimurium LT2.
Proteins, 78, 2010
3LRJ
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BU of 3lrj by Molmil
Crystal structure of 3,4-Dihydroxy-2-butanone 4-phosphate synthase in complex with sulfate ion.
分子名称: 3,4-Dihydroxy-2-butanone 4-phosphate synthase, SULFATE ION
著者Kumar, P, Karthikeyan, S.
登録日2010-02-11
公開日2010-09-15
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.803 Å)
主引用文献Potential anti-bacterial drug target: structural characterization of 3,4-dihydroxy-2-butanone-4-phosphate synthase from Salmonella typhimurium LT2.
Proteins, 78, 2010
3MK3
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BU of 3mk3 by Molmil
Crystal structure of Lumazine synthase from Salmonella typhimurium LT2
分子名称: 6,7-dimethyl-8-ribityllumazine synthase, SULFATE ION
著者Kumar, P, Singh, M, Karthikeyan, S.
登録日2010-04-14
公開日2011-02-02
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3.569 Å)
主引用文献Crystal structure analysis of icosahedral lumazine synthase from Salmonella typhimurium, an antibacterial drug target.
Acta Crystallogr.,Sect.D, 67, 2011
3NQ4
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BU of 3nq4 by Molmil
30mer structure of Lumazine synthase from Salmonella typhimurium LT2
分子名称: 6,7-dimethyl-8-ribityllumazine synthase, SULFATE ION
著者Kumar, P, Singh, M, Karthikeyan, S.
登録日2010-06-29
公開日2011-06-08
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3.5 Å)
主引用文献Crystal structure of Lumazine synthase from Salmonella typhimurium LT2
To be Published
3CTO
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BU of 3cto by Molmil
Crystal Structure of M. tuberculosis YefM antitoxin
分子名称: SULFATE ION, Uncharacterized protein Rv3357/MT3465
著者Kumar, P, Issac, B, Dodson, E.J, Turkenberg, J.P, Mande, S.C.
登録日2008-04-14
公開日2008-12-02
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of Mycobacterium tuberculosis YefM antitoxin reveals that it is not an intrinsically unstructured protein
J.Mol.Biol., 383, 2008
3D55
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Crystal structure of M. tuberculosis YefM antitoxin
分子名称: SULFATE ION, Uncharacterized protein Rv3357/MT3465
著者Kumar, P, Issac, B, Dodson, E.J, Turkenberg, J.P, Mande, S.C.
登録日2008-05-15
公開日2008-12-02
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.13 Å)
主引用文献Crystal structure of Mycobacterium tuberculosis YefM antitoxin reveals that it is not an intrinsically unstructured protein
J.Mol.Biol., 383, 2008
5UWV
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BU of 5uwv by Molmil
Crystal structure of Mycobacterium abscessus L,D-transpeptidase 2
分子名称: L,D-TRANSPEPTIDASE 2
著者Kumar, P, Ginell, S.L, Lamichhane, G.
登録日2017-02-21
公開日2017-08-16
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.98 Å)
主引用文献Mycobacterium abscessus l,d-Transpeptidases Are Susceptible to Inactivation by Carbapenems and Cephalosporins but Not Penicillins.
Antimicrob. Agents Chemother., 61, 2017
6BMS
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BU of 6bms by Molmil
Palmitoyltransferase structure
分子名称: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, DODECYL-BETA-D-MALTOSIDE, PALMITIC ACID, ...
著者Kumar, P, Rajashankar, K.
登録日2017-11-15
公開日2018-01-10
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.441 Å)
主引用文献Fatty acyl recognition and transfer by an integral membraneS-acyltransferase.
Science, 359, 2018
7K34
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BU of 7k34 by Molmil
Crystal structure of L-threonine transaldolase from Pseudomonas fluorescens in internal aldimine state
分子名称: SULFATE ION, Threonine aldolase
著者Kumar, P, Bingman, C.A, Buller, A.R.
登録日2020-09-10
公開日2020-12-30
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.66 Å)
主引用文献l-Threonine Transaldolase Activity Is Enabled by a Persistent Catalytic Intermediate.
Acs Chem.Biol., 16, 2021
7L6U
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Unliganded ELIC in POPC-only nanodiscs at 3.3-Angstrom resolution
分子名称: Gamma-aminobutyric-acid receptor subunit beta-1
著者Kumar, P, Grosman, C.
登録日2020-12-23
公開日2021-06-23
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Structure and function at the lipid-protein interface of a pentameric ligand-gated ion channel.
Proc.Natl.Acad.Sci.USA, 118, 2021
7F71
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Crystal structure of the Mycobacterium tuberculosis L,D-transpeptidase-2 (LdtMt2) with peptidoglycan sugar moiety and glutamate
分子名称: GLUTAMIC ACID, GLYCEROL, L,D-transpeptidase 2, ...
著者Kumar, P, Lamichhane, G.
登録日2021-06-26
公開日2022-05-11
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.58 Å)
主引用文献Allosteric cooperation in beta-lactam binding to a non-classical transpeptidase.
Elife, 11, 2022
7F8P
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Crystal structure of the Mycobacterium tuberculosis L,D-transpeptidase-2 (LdtMt2) with new carbapenem drug T203
分子名称: (2R,3R)-3-methyl-4-(2-oxidanylidene-2-propan-2-yloxy-ethyl)sulfanyl-2-[(2R)-3-oxidanyl-1-oxidanylidene-butan-2-yl]-2,3-dihydro-1H-pyrrole-5-carboxylic acid, (4R,5S,6S)-6-((R)-1-hydroxyethyl)-3-((2-isopropoxy-2-oxoethyl)thio)-4-methyl-7-oxo-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid, GLUTAMIC ACID, ...
著者Kumar, P, Lamichhane, G.
登録日2021-07-02
公開日2022-05-11
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Allosteric cooperation in beta-lactam binding to a non-classical transpeptidase.
Elife, 11, 2022
2XRX
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BU of 2xrx by Molmil
CRYSTAL STRUCTURE OF BIPHENYL DIOXYGENASE IN COMPLEX WITH BIPHENYL FROM BURKHOLDERIA XENOVORANS LB400
分子名称: BIPHENYL, BIPHENYL DIOXYGENASE SUBUNIT ALPHA, BIPHENYL DIOXYGENASE SUBUNIT BETA, ...
著者Kumar, P, Bolin, J.T.
登録日2010-09-23
公開日2010-11-24
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.42 Å)
主引用文献Structural Insight Into the Expanded Pcb-Degrading Abilities of a Biphenyl Dioxygenase Obtained by Directed Evolution.
J.Mol.Biol., 405, 2011
2YFI
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Crystal Structure of Biphenyl dioxygenase variant RR41 (BPDO-RR41)
分子名称: BIPHENYL DIOXYGENASE SUBUNIT ALPHA, BIPHENYL DIOXYGENASE SUBUNIT BETA, FE (II) ION, ...
著者Kumar, P, Bolin, J.T.
登録日2011-04-06
公開日2011-06-08
最終更新日2023-12-20
実験手法X-RAY DIFFRACTION (2.15 Å)
主引用文献Retuning Rieske-Type Oxygenases to Expand Substrate Range.
J.Biol.Chem., 286, 2011

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