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PDB: 22 results
8BHL
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BU of 8bhl by Molmil
Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and Am6AA mRNA codon in the A-site after uncompleted di-peptide formation
Descriptor: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ...
Authors:Koziej, L, Glatt, S.
Deposit date:2022-10-31
Release date:2023-08-16
Method:ELECTRON MICROSCOPY (2.21 Å)
Cite:Modulation of translational decoding by m 6 A modification of mRNA.
Nat Commun, 14, 2023
8BH4
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BU of 8bh4 by Molmil
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Descriptor: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ...
Authors:Koziej, L, Glatt, S.
Deposit date:2022-10-29
Release date:2023-08-16
Last modified:2024-11-06
Method:ELECTRON MICROSCOPY (2.62 Å)
Cite:Modulation of translational decoding by m 6 A modification of mRNA.
Nat Commun, 14, 2023
8BGE
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BU of 8bge by Molmil
Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAm6A mRNA codon in the A-site after uncompleted di-peptide formation
Descriptor: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ...
Authors:Koziej, L, Glatt, S.
Deposit date:2022-10-27
Release date:2023-08-16
Method:ELECTRON MICROSCOPY (2.11 Å)
Cite:Modulation of translational decoding by m 6 A modification of mRNA.
Nat Commun, 14, 2023
8BHJ
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BU of 8bhj by Molmil
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and Am6AA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Descriptor: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ...
Authors:Koziej, L, Glatt, S.
Deposit date:2022-10-31
Release date:2023-08-16
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (2.81 Å)
Cite:Modulation of translational decoding by m 6 A modification of mRNA.
Nat Commun, 14, 2023
8BHP
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BU of 8bhp by Molmil
Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and m6AAA mRNA codon in the A-site after uncompleted di-peptide formation
Descriptor: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ...
Authors:Koziej, L, Glatt, S.
Deposit date:2022-10-31
Release date:2023-08-16
Method:ELECTRON MICROSCOPY (2.37 Å)
Cite:Modulation of translational decoding by m 6 A modification of mRNA.
Nat Commun, 14, 2023
8BHN
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BU of 8bhn by Molmil
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and m6AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Descriptor: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ...
Authors:Koziej, L, Glatt, S.
Deposit date:2022-10-31
Release date:2023-08-16
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (2.85 Å)
Cite:Modulation of translational decoding by m 6 A modification of mRNA.
Nat Commun, 14, 2023
8BIM
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BU of 8bim by Molmil
Initiation complex of the E. coli 70S ribosome with mRNA containing AAm6A codon in the A-site
Descriptor: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ...
Authors:Koziej, L, Glatt, S.
Deposit date:2022-11-02
Release date:2023-08-16
Method:ELECTRON MICROSCOPY (2.04 Å)
Cite:Modulation of translational decoding by m 6 A modification of mRNA.
Nat Commun, 14, 2023
8BF7
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BU of 8bf7 by Molmil
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Descriptor: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ...
Authors:Koziej, L, Glatt, S.
Deposit date:2022-10-24
Release date:2023-08-16
Last modified:2024-10-16
Method:ELECTRON MICROSCOPY (2.33 Å)
Cite:Modulation of translational decoding by m 6 A modification of mRNA.
Nat Commun, 14, 2023
8BGH
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BU of 8bgh by Molmil
Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation
Descriptor: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ...
Authors:Koziej, L, Glatt, S.
Deposit date:2022-10-27
Release date:2023-08-16
Method:ELECTRON MICROSCOPY (2.88 Å)
Cite:Modulation of translational decoding by m 6 A modification of mRNA.
Nat Commun, 14, 2023
8BIL
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BU of 8bil by Molmil
Initiation complex of the E. coli 70S ribosome with mRNA containing AAA codon in the A-site.
Descriptor: 16S rRNA RRSB-RRNA, 23S rRNA RRLG-RRNA, 30S ribosomal protein S10, ...
Authors:Koziej, L, Glatt, S.
Deposit date:2022-11-02
Release date:2023-08-16
Method:ELECTRON MICROSCOPY (2.04 Å)
Cite:Modulation of translational decoding by m 6 A modification of mRNA.
Nat Commun, 14, 2023
9G3O
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BU of 9g3o by Molmil
Circularly permuted lumazine synthase 24-pentamer spherical cage
Descriptor: 6,7-dimethyl-8-ribityllumazine synthase
Authors:Koziej, L, Azuma, Y.
Deposit date:2024-07-12
Release date:2025-03-05
Last modified:2025-03-19
Method:ELECTRON MICROSCOPY (2.76 Å)
Cite:Dynamic Assembly of Pentamer-Based Protein Nanotubes.
Acs Nano, 19, 2025
9G3P
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BU of 9g3p by Molmil
Circularly permuted lumazine synthase 12-pentamer spherical cage
Descriptor: 6,7-dimethyl-8-ribityllumazine synthase
Authors:Koziej, L, Azuma, Y.
Deposit date:2024-07-12
Release date:2025-03-05
Last modified:2025-03-19
Method:ELECTRON MICROSCOPY (2.08 Å)
Cite:Dynamic Assembly of Pentamer-Based Protein Nanotubes.
Acs Nano, 19, 2025
9G3I
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BU of 9g3i by Molmil
Circularly permuted lumazine synthase twisted tube with 18 Angstrom gap between double strands
Descriptor: 6,7-dimethyl-8-ribityllumazine synthase
Authors:Koziej, L, Azuma, Y.
Deposit date:2024-07-12
Release date:2025-03-05
Last modified:2025-03-19
Method:ELECTRON MICROSCOPY (2.85 Å)
Cite:Dynamic Assembly of Pentamer-Based Protein Nanotubes.
Acs Nano, 19, 2025
9G3H
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BU of 9g3h by Molmil
Circularly permuted lumazine synthase twisted tube with no gap between between double strands
Descriptor: 6,7-dimethyl-8-ribityllumazine synthase
Authors:Koziej, L, Azuma, Y.
Deposit date:2024-07-12
Release date:2025-03-05
Last modified:2025-03-19
Method:ELECTRON MICROSCOPY (2.44 Å)
Cite:Dynamic Assembly of Pentamer-Based Protein Nanotubes.
Acs Nano, 19, 2025
9G3M
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BU of 9g3m by Molmil
Circularly permuted lumazine synthase triple-stranded straight tube
Descriptor: 6,7-dimethyl-8-ribityllumazine synthase
Authors:Koziej, L, Azuma, Y.
Deposit date:2024-07-12
Release date:2025-03-05
Last modified:2025-03-19
Method:ELECTRON MICROSCOPY (3.09 Å)
Cite:Dynamic Assembly of Pentamer-Based Protein Nanotubes.
Acs Nano, 19, 2025
9G3J
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BU of 9g3j by Molmil
Circularly permuted lumazine synthase twisted tube with 28 Angstrom gap between double strands
Descriptor: 6,7-dimethyl-8-ribityllumazine synthase
Authors:Koziej, L, Azuma, Y.
Deposit date:2024-07-12
Release date:2025-03-05
Last modified:2025-03-19
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Dynamic Assembly of Pentamer-Based Protein Nanotubes.
Acs Nano, 19, 2025
9G3N
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BU of 9g3n by Molmil
Circularly permuted lumazine synthase 36-pentamer spherical cage
Descriptor: 6,7-dimethyl-8-ribityllumazine synthase
Authors:Koziej, L, Azuma, Y.
Deposit date:2024-07-12
Release date:2025-03-05
Last modified:2025-03-19
Method:ELECTRON MICROSCOPY (3.07 Å)
Cite:Dynamic Assembly of Pentamer-Based Protein Nanotubes.
Acs Nano, 19, 2025
7ZYV
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BU of 7zyv by Molmil
Cryo-EM structure of catalytically active Spinacia oleracea cytochrome b6f in complex with endogenous plastoquinones at 2.13 A resolution
Descriptor: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE, BETA-CAROTENE, ...
Authors:Sarewicz, M, Szwalec, M, Pintscher, S, Indyka, P, Rawski, M, Pietras, R, Mielecki, B, Koziej, L, Jaciuk, M, Glatt, S, Osyczka, A.
Deposit date:2022-05-25
Release date:2023-01-25
Method:ELECTRON MICROSCOPY (2.13 Å)
Cite:High-resolution cryo-EM structures of plant cytochrome b 6 f at work.
Sci Adv, 9, 2023
9ES8
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BU of 9es8 by Molmil
Cryo-EM structure of Spinacia oleracea cytochrome b6f with decylplastoquinone bound at plastoquionol reduction site
Descriptor: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, BETA-CAROTENE, ...
Authors:Pietras, R, Pintscher, S, Mielecki, B, Szwalec, M, Wojcik-Augustyn, A, Indyka, P, Rawski, M, Koziej, L, Jaciuk, M, Wazny, G, Glatt, S, Osyczka, A.
Deposit date:2024-03-25
Release date:2024-10-16
Last modified:2024-11-27
Method:ELECTRON MICROSCOPY (2.24 Å)
Cite:Molecular basis of plastoquinone reduction in plant cytochrome b 6 f.
Nat.Plants, 10, 2024
9ES7
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BU of 9es7 by Molmil
Cryo-EM structure of Spinacia oleracea cytochrome b6f complex with water molecules at 1.94 A resolution
Descriptor: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, BETA-CAROTENE, ...
Authors:Pietras, R, Pintscher, S, Mielecki, B, Szwalec, M, Wojcik-Augustyn, A, Indyka, P, Rawski, M, Koziej, L, Jaciuk, M, Wazny, G, Glatt, S, Osyczka, A.
Deposit date:2024-03-25
Release date:2024-10-16
Last modified:2024-11-27
Method:ELECTRON MICROSCOPY (1.94 Å)
Cite:Molecular basis of plastoquinone reduction in plant cytochrome b 6 f.
Nat.Plants, 10, 2024
9ES9
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BU of 9es9 by Molmil
Cryo-EM structure of Spinacia oleracea cytochrome b6f complex with inhibitor DBMIB bound at plastoquinol oxidation site
Descriptor: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, 2,5-DIBROMO-3-ISOPROPYL-6-METHYLBENZO-1,4-QUINONE, ...
Authors:Pietras, R, Pintscher, S, Mielecki, B, Szwalec, M, Wojcik-Augustyn, A, Indyka, P, Rawski, M, Koziej, L, Jaciuk, M, Wazny, G, Glatt, S, Osyczka, A.
Deposit date:2024-03-25
Release date:2024-10-16
Last modified:2024-11-27
Method:ELECTRON MICROSCOPY (2.33 Å)
Cite:Molecular basis of plastoquinone reduction in plant cytochrome b 6 f.
Nat.Plants, 10, 2024
9I8V
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BU of 9i8v by Molmil
Cryo-EM structure of the Danio rerio tRNA ligase complex
Descriptor: ATP-dependent RNA helicase, Ashwin, Family with sequence similarity 98, ...
Authors:Chamera, S, Zajko, W, Czarnocki-Cieciura, M, Jaciuk, M, Koziej, L, Nowak, J, Wycisk, K, Sroka, M, Chramiec-Glabik, A, Smietanski, M, Golebiowski, F, Warminski, M, Jemielity, J, Glatt, S, Nowotny, M.
Deposit date:2025-02-06
Release date:2025-04-23
Last modified:2025-05-21
Method:ELECTRON MICROSCOPY (3.33 Å)
Cite:Structural and biochemical characterization of the 3'-5' tRNA splicing ligases.
J.Biol.Chem., 301, 2025

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PDB entries from 2025-06-11

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