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PDB: 2433 results

3AKZ
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Crystal structure of Thermotoga maritima nondiscriminating glutamyl-tRNA synthetase in complex with tRNAGln and a glutamyl-AMP analog
Descriptor: Glutamyl-tRNA synthetase 2, O5'-(L-GLUTAMYL-SULFAMOYL)-ADENOSINE, tRNAGln
Authors:Ito, T, Yokoyama, S.
Deposit date:2010-07-19
Release date:2010-09-29
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Two enzymes bound to one transfer RNA assume alternative conformations for consecutive reactions.
Nature, 467, 2010
1IUF
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LOW RESOLUTION SOLUTION STRUCTURE OF THE TWO DNA-BINDING DOMAINS IN Schizosaccharomyces pombe ABP1 PROTEIN
Descriptor: centromere abp1 protein
Authors:Kikuchi, J, Iwahara, J, Kigawa, T, Murakami, Y, Okazaki, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2002-03-04
Release date:2002-06-05
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:Solution structure determination of the two DNA-binding domains in the Schizosaccharomyces pombe Abp1 protein by a combination of dipolar coupling and diffusion anisotropy restraints.
J.Biomol.NMR, 22, 2002
2Z3F
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Crystal structure of spCia1/Asf1 complexed with Cac2 peptide
Descriptor: Histone chaperone cia1, SPAC26H5.03 protein
Authors:Malay, A.D, Padmanabhan, B, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-06-04
Release date:2008-03-11
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal Structures of Fission Yeast Histone Chaperone Asf1 Complexed with the Hip1 B-domain or the Cac2 C Terminus
J.Biol.Chem., 283, 2008
2YUH
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Solution structure of the C-terminal region in human tubulin folding cofactor C
Descriptor: Tubulin-specific chaperone C
Authors:Saito, K, Tochio, N, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-06
Release date:2008-04-15
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the C-terminal region in human tubulin folding cofactor C
To be Published
1WKB
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Crystal Structure of Leucyl-tRNA Synthetase from the Archaeon Pyrococcus horikoshii Reveals a Novel Editing Domain Orientation
Descriptor: Leucyl-tRNA synthetase, SULFATE ION
Authors:Fukunaga, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-05-30
Release date:2005-02-08
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystal Structure of Leucyl-tRNA Synthetase from the Archaeon Pyrococcus horikoshii Reveals a Novel Editing Domain Orientation
J.Mol.Biol., 346, 2005
1WRB
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Crystal structure of the N-terminal RecA-like domain of DjVLGB, a pranarian Vasa-like RNA helicase
Descriptor: DjVLGB, SULFATE ION
Authors:Kurimoto, K, Muto, Y, Obayashi, N, Terada, T, Shirouzu, M, Yabuki, T, Aoki, M, Seki, E, Matsuda, T, Kigawa, T, Okumura, H, Tanaka, A, Shibata, N, Kashikawa, M, Agata, K, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-10-14
Release date:2005-04-12
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of the N-terminal RecA-like domain of a DEAD-box RNA helicase, the Dugesia japonica vasa-like gene B protein
J.Struct.Biol., 150, 2005
2YR1
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Crystal Structure of 3-dehydroquinate dehydratase from Geobacillus kaustophilus HTA426
Descriptor: 3-dehydroquinate dehydratase
Authors:Kagawa, W, Kurumizaka, H, Bessho, Y, Chen, L, Fu, Z.Q, Chrzas, J, Wang, B.C, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-01
Release date:2007-10-02
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of 3-dehydroquinate dehydratase from Geobacillus kaustophilus HTA426
To be published
2YV5
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Crystal structure of Yjeq from Aquifex aeolicus
Descriptor: CHLORIDE ION, GUANOSINE-5'-DIPHOSPHATE, YjeQ protein, ...
Authors:Wang, H, Kaminishi, T, Hanawa-Suetsugu, K, Takemoto, C, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-09
Release date:2008-04-15
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of YjeQ from Aquifex aeolicus
To be Published
2YVU
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Crystal structure of APE1195
Descriptor: Probable adenylyl-sulfate kinase
Authors:Ishii, R, Bessho, Y, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-15
Release date:2007-10-16
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Crystal structure of APE1195
To be published
2YWH
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Crystal structure of GDP-bound LepA from Aquifex aeolicus
Descriptor: GTP-binding protein LepA, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION
Authors:Kawazoe, M, Takemoto, C, Kaminishi, T, Nishino, A, Nakayama-Ushikoshi, R, Hanawa-Suetsugu, K, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-20
Release date:2008-04-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:Crystal structures of GTP-binding protein LepA from Aquifex aeolicus.
To be Published
2YR3
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Solution structure of the fourth Ig-like domain from myosin light chain kinase, smooth muscle
Descriptor: Myosin light chain kinase, smooth muscle
Authors:Qin, X.R, Kurosaki, C, Yoshida, M, Hayahsi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-02
Release date:2007-10-02
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the fourth Ig-like domain from myosin light chain kinase, smooth muscle
To be Published
2YT8
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Solution structure of the PDZ domain of Amyloid beta A4 precursor protein-binding family A member 3 (Neuron- specific X11L2 protein) (Neuronal Munc18-1-interacting protein 3) (Mint-3) (Adapter protein X11gamma)
Descriptor: Amyloid beta A4 precursor protein-binding family A member 3
Authors:Dang, W, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Tarada, T, Seiki, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-05
Release date:2008-04-08
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the PDZ domain of Amyloid beta A4 precursor protein-binding family A member 3 (Neuron- specific X11L2 protein) (Neuronal Munc18-1-interacting protein 3) (Mint-3) (Adapter protein X11gamma)
To be Published
2YUC
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Solution structure of the TRAF-type zinc finger domains (102-164) from human TNF receptor associated factor 4
Descriptor: TNF receptor-associated factor 4, ZINC ION
Authors:Hayashi, F, Suetake, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-06
Release date:2008-04-08
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the TRAF-type zinc finger domains (102-164) from human TNF receptor associated factor 4
To be Published
2YQI
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Solution structure of the second HMG-box domain from high mobility group protein B3
Descriptor: High mobility group protein B3
Authors:Qin, X.R, Hayahsi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-30
Release date:2008-04-01
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the second HMG-box domain from high mobility group protein B3
To be Published
2Z0X
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Crystal structure of ProX-CysSA complex from T. thermophilus
Descriptor: 5'-O-(N-(L-CYSTEINYL)-SULFAMOYL)ADENOSINE, Putative uncharacterized protein TTHA1699
Authors:Murayama, K, Kato-Murayama, M, Terada, T, Kuramitsu, S, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-05-07
Release date:2007-11-13
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Crystal structure of ProX-CysSA complex from T. thermophilus
To be Published
2YUJ
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Solution structure of human ubiquitin fusion degradation protein 1 homolog UFD1
Descriptor: Ubiquitin fusion degradation 1-like
Authors:Saito, K, Tomizawa, T, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-06
Release date:2008-04-15
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution structure of human ubiquitin fusion degradation protein 1 homolog UFD1
To be Published
2YUD
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Solution structure of the YTH domain in YTH domain-containing protein 1 (Putative splicing factor YT521)
Descriptor: YTH domain-containing protein 1
Authors:He, F, Muto, Y, Inoue, M, Kigawa, T, Shirouzu, M, Tarada, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-06
Release date:2007-10-09
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the YTH domain in YTH domain-containing protein 1 (Putative splicing factor YT521)
To be Published
2YWF
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BU of 2ywf by Molmil
Crystal structure of GMPPNP-bound LepA from Aquifex aeolicus
Descriptor: GTP-binding protein lepA, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
Authors:Kawazoe, M, Takemoto, C, Kaminishi, T, Nishino, A, Nakayama-Ushikoshi, R, Hanawa-Suetsugu, K, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-20
Release date:2008-04-29
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:Crystal structures of GTP-binding protein LepA from Aquifex aeolicus
To be Published
2YSM
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Solution structure of the second and third PHD domain from Histone-lysine N-methyltransferase 2C (KMT2C/MLL3)
Descriptor: Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog, ZINC ION
Authors:Qin, X.R, Hayashi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-03
Release date:2007-10-09
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Solution structure of the first and second PHD domain from Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog
To be Published
2YUB
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Solution structure of the PDZ domain from mouse LIM domain kinase
Descriptor: LIM domain kinase 2
Authors:Hayashi, F, Suetake, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-06
Release date:2008-04-08
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the PDZ domain from mouse LIM domain kinase
To be Published
2YQD
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Solution structure of the fifth bromodomain from mouse polybromo-1
Descriptor: POLYBROMO-1
Authors:Sano, R, Hayashi, F, Yoshida, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-30
Release date:2007-10-02
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the fifth bromodomain from mouse polybromo-1
To be Published
2YSR
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BU of 2ysr by Molmil
Solution structure of the DEP domain from human DEP domain-containing protein 1
Descriptor: DEP domain-containing protein 1
Authors:Zhang, H.P, Hayahsi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-03
Release date:2007-10-09
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the DEP domain from human DEP domain-containing protein 1
To be Published
2YWE
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BU of 2ywe by Molmil
Crystal structure of LepA from Aquifex aeolicus
Descriptor: GTP-binding protein lepA
Authors:Kawazoe, M, Takemoto, C, Kaminishi, T, Nishino, A, Nakayama-Ushikoshi, R, Hanawa-Suetsugu, K, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-20
Release date:2008-04-29
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Crystal structures of GTP-binding protein LepA from Aquifex aeolicus
To be Published
2YY2
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Crystal structure of the human Phosphodiesterase 9A catalytic domain complexed with IBMX
Descriptor: 3-ISOBUTYL-1-METHYLXANTHINE, High-affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A, MAGNESIUM ION, ...
Authors:Handa, N, Shirouzu, M, Terada, T, Omori, K, Kotera, J, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-04-27
Release date:2007-10-30
Last modified:2024-08-14
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of the human Phosphodiesterase 9A catalytic domain.
To be Published
1WLN
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BU of 1wln by Molmil
Solution structure of the FHA domain of mouse Afadin 6
Descriptor: Afadin
Authors:Hayashi, F, Hirata, Y, Guentert, P, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-06-28
Release date:2005-07-12
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the FHA domain of mouse Afadin 6
TO BE PUBLISHED

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