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PDB: 2433 件
2YYB
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BU of 2yyb by Molmil
Crystal structure of TTHA1606 from Thermus thermophilus HB8
分子名称: Hypothetical protein TTHA1606
著者Tomoike, F, Nakagwa, N, Ebihara, A, Yokoyama, S, Masui, R, Kuramitsu, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-04-28
公開日2008-05-06
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystal structure of the conserved hypothetical protein TTHA1606 from Thermus thermophilus HB8.
Proteins, 76, 2009
2CYJ
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BU of 2cyj by Molmil
Crystal structure of conserved hypothetical protein PH1505 from Pyrococcus horikoshii OT3
分子名称: ACETATE ION, SULFATE ION, hypothetical protein PH1505
著者Ito, K, Arai, R, Kamo-Uchikubo, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-07-07
公開日2006-01-07
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Crystal structure of conserved hypothetical protein PH1505 from Pyrococcus horikoshii OT3
To be Published
2YVP
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BU of 2yvp by Molmil
Crystal structure of NDX2 in complex with MG2+ and ampcpr from thermus thermophilus HB8
分子名称: MAGNESIUM ION, METHYLENE ADP-BETA-XYLOSE, MutT/nudix family protein
著者Wakamatsu, T, Nakagawa, N, Kuramitsu, S, Yokoyama, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-04-13
公開日2008-02-26
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.66 Å)
主引用文献Structural basis for different substrate specificities of two ADP-ribose pyrophosphatases from Thermus thermophilus HB8
J.Bacteriol., 190, 2008
2YVN
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BU of 2yvn by Molmil
Crystal structure of NDX2 from thermus thermophilus HB8
分子名称: MutT/nudix family protein
著者Wakamatsu, T, Nakagawa, N, Kuramitsu, S, Yokoyama, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-04-13
公開日2008-02-26
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献Structural basis for different substrate specificities of two ADP-ribose pyrophosphatases from Thermus thermophilus HB8
J.Bacteriol., 190, 2008
6ABK
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BU of 6abk by Molmil
Crystal structure of Methanosarcina mazei PylRS(Y306A/Y384F) complexed with TeocLys
分子名称: (2S)-2-azanyl-6-(trimethylsilylmethoxycarbonylamino)hexanoic acid, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
著者Yanagisawa, T, Kuratani, M, Yokoyama, S.
登録日2018-07-22
公開日2019-04-17
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.58 Å)
主引用文献Structural Basis for Genetic-Code Expansion with Bulky Lysine Derivatives by an Engineered Pyrrolysyl-tRNA Synthetase.
Cell Chem Biol, 26, 2019
6KRZ
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BU of 6krz by Molmil
Crystal structure of the human adiponectin receptor 1 D208A mutant
分子名称: (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, Adiponectin receptor protein 1, OLEIC ACID, ...
著者Tanabe, H, Fujii, Y, Okada-Iwabu, M, Iwabu, M, Yamauchi, T, Kadowaki, T, Yokoyama, S.
登録日2019-08-22
公開日2020-08-19
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (3.05 Å)
主引用文献Human adiponectin receptor AdipoR1 assumes closed and open structures.
Commun Biol, 3, 2020
2YVM
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BU of 2yvm by Molmil
Crystal structure of NDX2 in complex with MG2+ from thermus thermophilus HB8
分子名称: MAGNESIUM ION, MutT/nudix family protein
著者Wakamatsu, T, Nakagawa, N, Kuramitsu, S, Yokoyama, S, Masui, R, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2007-04-13
公開日2008-02-26
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Structural basis for different substrate specificities of two ADP-ribose pyrophosphatases from Thermus thermophilus HB8
J.Bacteriol., 190, 2008
2D9D
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BU of 2d9d by Molmil
Solution structure of the BAG domain (275-350) of BAG-family molecular chaperone regulator-5
分子名称: BAG family molecular chaperone regulator 5
著者Hatta, R, Hayashi, F, Yoshida, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-12-09
公開日2006-12-09
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献The C-terminal BAG domain of BAG5 induces conformational changes of the Hsp70 nucleotide-binding domain for ADP-ATP exchange
Structure, 18, 2010
6AAP
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BU of 6aap by Molmil
Crystal structure of Methanosarcina mazei PylRS(Y306A/Y384F) complexed with ZaeSeCys
分子名称: 3-[(2-{[(benzyloxy)carbonyl]amino}ethyl)selanyl]-L-alanine, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
著者Yanagisawa, T, Kuratani, M, Yokoyama, S.
登録日2018-07-18
公開日2019-04-17
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structural Basis for Genetic-Code Expansion with Bulky Lysine Derivatives by an Engineered Pyrrolysyl-tRNA Synthetase.
Cell Chem Biol, 26, 2019
6AAO
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BU of 6aao by Molmil
Crystal structure of Methanosarcina mazei PylRS(Y306A/Y384F) complexed with TCO*Lys
分子名称: ADENOSINE-5'-TRIPHOSPHATE, DI(HYDROXYETHYL)ETHER, MAGNESIUM ION, ...
著者Yanagisawa, T, Kuratani, M, Yokoyama, S.
登録日2018-07-18
公開日2019-04-17
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.403 Å)
主引用文献Structural Basis for Genetic-Code Expansion with Bulky Lysine Derivatives by an Engineered Pyrrolysyl-tRNA Synthetase.
Cell Chem Biol, 26, 2019
6AB0
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BU of 6ab0 by Molmil
Crystal structure of Methanosarcina mazei PylRS(Y306A/Y384F) complexed with pAmPyLys
分子名称: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, N6-{[(6-aminopyridin-3-yl)methoxy]carbonyl}-L-lysine, ...
著者Yanagisawa, T, Kuratani, M, Yokoyama, S.
登録日2018-07-19
公開日2019-04-17
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.441 Å)
主引用文献Structural Basis for Genetic-Code Expansion with Bulky Lysine Derivatives by an Engineered Pyrrolysyl-tRNA Synthetase.
Cell Chem Biol, 26, 2019
1EW1
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BU of 1ew1 by Molmil
RECA PROTEIN-BOUND SINGLE-STRANDED DNA
分子名称: DNA (5'-D(*TP*AP*CP*G)-3')
著者Nishinaka, T, Ito, Y, Yokoyama, S, Shibata, T.
登録日2000-04-21
公開日2000-05-08
最終更新日2024-05-22
実験手法SOLUTION NMR
主引用文献An extended DNA structure through deoxyribose-base stacking induced by RecA protein.
Proc.Natl.Acad.Sci.USA, 94, 1997
2DBN
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BU of 2dbn by Molmil
Crystal Structure of a Hypothetical Protein JW0805 at High pH from Escherichia coli
分子名称: Hypothetical protein ybiU, SULFATE ION
著者Ihsanawati, Murayama, K, Bessho, Y, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2005-12-15
公開日2006-06-15
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal Structure of a Hypothetical Protein JW0805 at High pH from Escherichia coli
To be published
6AAD
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BU of 6aad by Molmil
Crystal structure of Methanosarcina mazei PylRS(Y306A/Y384F) complexed with mTmdZLys
分子名称: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, N6-[({3-[3-(trifluoromethyl)-3H-diaziren-3-yl]phenyl}methoxy)carbonyl]-L-lysine, ...
著者Yanagisawa, T, Kuratani, M, Yokoyama, S.
登録日2018-07-18
公開日2019-04-17
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.444 Å)
主引用文献Structural Basis for Genetic-Code Expansion with Bulky Lysine Derivatives by an Engineered Pyrrolysyl-tRNA Synthetase.
Cell Chem Biol, 26, 2019
6AAQ
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BU of 6aaq by Molmil
Crystal structure of Methanosarcina mazei PylRS(Y306A/Y384F) complexed with BCNLys
分子名称: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, N6-({[(1R,8S,9s)-bicyclo[6.1.0]non-4-yn-9-yl]methoxy}carbonyl)-L-lysine, ...
著者Yanagisawa, T, Kuratani, M, Yokoyama, S.
登録日2018-07-18
公開日2019-04-17
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.551 Å)
主引用文献Structural Basis for Genetic-Code Expansion with Bulky Lysine Derivatives by an Engineered Pyrrolysyl-tRNA Synthetase.
Cell Chem Biol, 26, 2019
2DNE
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BU of 2dne by Molmil
Solution Structure of RSGI RUH-058, a lipoyl domain of human 2-oxoacid dehydrogenase
分子名称: Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
著者Ruhul Momen, A.Z.M, Hirota, H, Hayashi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-04-26
公開日2006-10-26
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution Structure of RSGI RUH-058, a lipoyl domain of human 2-oxoacid dehydrogenase
To be published
2DLR
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BU of 2dlr by Molmil
Solution structure of the RGS domain of human Regulator of G-protein signaling 10
分子名称: Regulator of G-protein signaling 10
著者Zhang, H.P, Nagashima, T, Hayashi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-04-20
公開日2006-10-20
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of the RGS domain of human Regulator of G-protein signaling 10
To be published
2DX0
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BU of 2dx0 by Molmil
Crystal structure of the N-terminal SH2 domain of mouse phospholipase C-gamma 2
分子名称: Phospholipase C, gamma 2, SULFATE ION
著者Handa, N, Takagi, T, Murayama, K, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-08-22
公開日2007-09-04
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Crystal structure of the N-terminal SH2 domain of mouse phospholipase C-gamma 2
To be Published
2DVV
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BU of 2dvv by Molmil
Crystal structure of the second bromodomain of the human Brd2 protein
分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Bromodomain-containing protein 2
著者Padmanabhan, B, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-08-01
公開日2007-08-07
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of the second bromodomain of the human Brd2 protein
To be Published
2DWZ
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BU of 2dwz by Molmil
Structure of the Oncoprotein Gankyrin in Complex with S6 ATPase of the 26S Proteasome
分子名称: 26S protease regulatory subunit 6B, 26S proteasome non-ATPase regulatory subunit 10, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
著者Padmanabhan, B, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
登録日2006-08-22
公開日2007-08-28
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Structure of the Oncoprotein Gankyrin in Complex with S6 ATPase of the 26S Proteasome
To be Published
6AAC
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BU of 6aac by Molmil
Crystal structure of Methanosarcina mazei PylRS(Y306A/Y384F) complexed with mAzZLys
分子名称: ADENOSINE-5'-TRIPHOSPHATE, DI(HYDROXYETHYL)ETHER, MAGNESIUM ION, ...
著者Yanagisawa, T, Kuratani, M, Yokoyama, S.
登録日2018-07-18
公開日2019-04-17
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.479 Å)
主引用文献Structural Basis for Genetic-Code Expansion with Bulky Lysine Derivatives by an Engineered Pyrrolysyl-tRNA Synthetase.
Cell Chem Biol, 26, 2019
6AB1
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BU of 6ab1 by Molmil
Crystal structure of Methanosarcina mazei PylRS(Y306A/Y384F) complexed with oAzZLys
分子名称: (2S)-2-azanyl-6-[(2-azidophenyl)methoxycarbonylamino]hexanoic acid, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
著者Yanagisawa, T, Kuratani, M, Yokoyama, S.
登録日2018-07-19
公開日2019-04-17
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.381 Å)
主引用文献Structural Basis for Genetic-Code Expansion with Bulky Lysine Derivatives by an Engineered Pyrrolysyl-tRNA Synthetase.
Cell Chem Biol, 26, 2019
6ABL
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BU of 6abl by Molmil
Crystal structure of Methanosarcina mazei PylRS(Y306A/Y384F) complexed with oBrZLys
分子名称: (2S)-2-azanyl-6-[(2-bromophenyl)methoxycarbonylamino]hexanoic acid, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
著者Yanagisawa, T, Kuratani, M, Yokoyama, S.
登録日2018-07-22
公開日2019-04-17
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.47 Å)
主引用文献Structural Basis for Genetic-Code Expansion with Bulky Lysine Derivatives by an Engineered Pyrrolysyl-tRNA Synthetase.
Cell Chem Biol, 26, 2019
6AAN
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BU of 6aan by Molmil
Crystal structure of Methanosarcina mazei PylRS(Y306A/Y384F) complexed with mEtZLys
分子名称: ADENOSINE-5'-TRIPHOSPHATE, DI(HYDROXYETHYL)ETHER, MAGNESIUM ION, ...
著者Yanagisawa, T, Kuratani, M, Yokoyama, S.
登録日2018-07-18
公開日2019-04-17
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.51 Å)
主引用文献Structural Basis for Genetic-Code Expansion with Bulky Lysine Derivatives by an Engineered Pyrrolysyl-tRNA Synthetase.
Cell Chem Biol, 26, 2019
6ABM
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BU of 6abm by Molmil
Crystal structure of Methanosarcina mazei PylRS(Y306A/Y384F) complexed with pTmdZLys
分子名称: (2S)-2-azanyl-6-[[4-[3-(trifluoromethyl)-1,2-diazirin-3-yl]phenyl]methoxycarbonylamino]hexanoic acid, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
著者Yanagisawa, T, Kuratani, M, Yokoyama, S.
登録日2018-07-22
公開日2019-04-17
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.368 Å)
主引用文献Structural Basis for Genetic-Code Expansion with Bulky Lysine Derivatives by an Engineered Pyrrolysyl-tRNA Synthetase.
Cell Chem Biol, 26, 2019

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