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PDB: 66 件
6NE9
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BU of 6ne9 by Molmil
Bacteroides intestinalis acetyl xylan esterase (BACINT_01039)
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
著者Koropatkin, N.M, Pereira, G.V, Cann, I.
登録日2018-12-17
公開日2019-12-25
最終更新日2021-01-27
実験手法X-RAY DIFFRACTION (1.738 Å)
主引用文献Degradation of complex arabinoxylans by human colonic Bacteroidetes
Nat Commun, 2021
5CK0
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BU of 5ck0 by Molmil
BT4246
分子名称: NICKEL (II) ION, POTASSIUM ION, SusD homolog
著者Koropatkin, N.M.
登録日2015-07-15
公開日2016-10-12
最終更新日2024-05-01
実験手法X-RAY DIFFRACTION (1.996 Å)
主引用文献Mechanistic insight into mucin degradation by the human gut microbiota reveals targeting of the glycoprotein core
to be published
5CJZ
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BU of 5cjz by Molmil
BT4246 with galactose
分子名称: 1,2-ETHANEDIOL, CALCIUM ION, CESIUM ION, ...
著者Koropatkin, N.M.
登録日2015-07-15
公開日2016-10-12
最終更新日2024-01-10
実験手法X-RAY DIFFRACTION (1.803 Å)
主引用文献Mechanistic insight into mucin degradation by the human gut microbiota reveals targeting of the glycoprotein core
to be published
1WVC
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BU of 1wvc by Molmil
alpha-D-glucose-1-phosphate cytidylyltransferase complexed with CTP
分子名称: CYTIDINE-5'-TRIPHOSPHATE, Glucose-1-phosphate cytidylyltransferase, MAGNESIUM ION, ...
著者Koropatkin, N.M, Cleland, W.W, Holden, H.M.
登録日2004-12-14
公開日2005-01-11
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Kinetic and structural analysis of alpha-D-Glucose-1-phosphate cytidylyltransferase from Salmonella typhi.
J.Biol.Chem., 280, 2005
1WVG
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BU of 1wvg by Molmil
Structure of CDP-D-glucose 4,6-dehydratase from Salmonella typhi
分子名称: ADENOSINE-5-DIPHOSPHORIBOSE, CDP-glucose 4,6-dehydratase, CYTIDINE-5'-DIPHOSPHO-BETA-D-XYLOSE
著者Koropatkin, N.M, Holden, H.M.
登録日2004-12-15
公開日2005-01-26
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structure of CDP-D-glucose 4,6-dehydratase from Salmonella typhi complexed with CDP-D-xylose.
Acta Crystallogr.,Sect.D, 61, 2005
4UA8
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BU of 4ua8 by Molmil
EUR_01830 (maltotriose-binding protein) complexed with maltotriose
分子名称: 1,2-ETHANEDIOL, Carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-), ...
著者Koropatkin, N.M, Orlovsky, N.I.
登録日2014-08-08
公開日2014-12-03
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.54 Å)
主引用文献Molecular details of a starch utilization pathway in the human gut symbiont Eubacterium rectale.
Mol.Microbiol., 95, 2015
4UAC
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BU of 4uac by Molmil
EUR_01830 with acarbose
分子名称: 1,2-ETHANEDIOL, 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, Carbohydrate ABC transporter substrate-binding protein, ...
著者Koropatkin, N.M, Orlovsky, N.I.
登録日2014-08-08
公開日2014-12-10
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Molecular details of a starch utilization pathway in the human gut symbiont Eubacterium rectale.
Mol.Microbiol., 95, 2015
1TZF
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BU of 1tzf by Molmil
X-ray Crystal Structure of alpha-D-glucose-1-phosphate cytidylyltransferase from Salmonella typhi
分子名称: Glucose-1-phosphate cytidylyltransferase, MAGNESIUM ION, [CYTIDINE-5'-PHOSPHATE]-BETA-GLUCOSYL-PHOSPHORIC ACID ESTER
著者Koropatkin, N.M, Holden, H.M.
登録日2004-07-09
公開日2004-09-07
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Molecular structure of alpha-D-glucose-1-phosphate cytidylyltransferase from Salmonella typhi
J.Biol.Chem., 279, 2004
2PT2
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BU of 2pt2 by Molmil
Structure of FutA1 with Iron(II)
分子名称: 1,2-ETHANEDIOL, FE (II) ION, Iron transport protein, ...
著者Koropatkin, N.M, Randich, A.M, Bhattachryya-Pakrasi, M, Pakrasi, H.B, Smith, T.J.
登録日2007-05-07
公開日2007-07-10
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献The structure of the iron-binding protein, FutA1, from Synechocystis 6803.
J.Biol.Chem., 282, 2007
2PT1
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BU of 2pt1 by Molmil
FutA1 Synechocystis PCC 6803
分子名称: Iron transport protein, SULFATE ION
著者Koropatkin, N.M, Randich, A.M, Bhattachryya-Pakrasi, M, Pakrasi, H.B, Smith, T.J.
登録日2007-05-07
公開日2007-07-10
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献The structure of the iron-binding protein, FutA1, from Synechocystis 6803.
J.Biol.Chem., 282, 2007
3K8K
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BU of 3k8k by Molmil
Crystal structure of SusG
分子名称: 1,2-ETHANEDIOL, ACETATE ION, Alpha-amylase, ...
著者Koropatkin, N.M, Smith, T.J.
登録日2009-10-14
公開日2010-03-02
最終更新日2017-11-01
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献SusG: A Unique Cell-Membrane-Associated alpha-Amylase from a Prominent Human Gut Symbiont Targets Complex Starch Molecules.
Structure, 18, 2010
3K8L
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BU of 3k8l by Molmil
Crystal structure of SusG-D498N mutant with maltoheptaose
分子名称: 1,2-ETHANEDIOL, Alpha-amylase, susG, ...
著者Koropatkin, N.M, Smith, T.J.
登録日2009-10-14
公開日2010-03-02
最終更新日2023-09-06
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献SusG: A Unique Cell-Membrane-Associated alpha-Amylase from a Prominent Human Gut Symbiont Targets Complex Starch Molecules.
Structure, 18, 2010
5J5U
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BU of 5j5u by Molmil
Fjoh_4561 chitin-binding protein
分子名称: RagB/SusD domain protein
著者Koropatkin, N.M.
登録日2016-04-03
公開日2017-02-08
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献A polysaccharide utilization locus from Flavobacterium johnsoniae enables conversion of recalcitrant chitin.
Biotechnol Biofuels, 9, 2016
5J90
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BU of 5j90 by Molmil
Structure of Fjoh_4558, a chitin-binding SusD homolog from Flavobacterium johnsoniae
分子名称: 1,2-ETHANEDIOL, RagB/SusD domain protein
著者Koropatkin, N.M.
登録日2016-04-08
公開日2017-02-08
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.3932 Å)
主引用文献A polysaccharide utilization locus from Flavobacterium johnsoniae enables conversion of recalcitrant chitin.
Biotechnol Biofuels, 9, 2016
1ORR
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BU of 1orr by Molmil
Crystal Structure of CDP-Tyvelose 2-Epimerase complexed with NAD and CDP
分子名称: CDP-tyvelose-2-epimerase, CYTIDINE-5'-DIPHOSPHATE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
著者Koropatkin, N.M, Liu, H, Holden, H.M.
登録日2003-03-14
公開日2003-08-26
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献High Resolution X-ray Structure of Tyvelose Epimerase from Salmonella typhi
J.Biol.Chem., 278, 2003
3K8M
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BU of 3k8m by Molmil
Crystal structure of SusG with acarbose
分子名称: 1,2-ETHANEDIOL, 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, ...
著者Koropatkin, N.M, Smith, T.J.
登録日2009-10-14
公開日2010-03-02
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献SusG: A Unique Cell-Membrane-Associated alpha-Amylase from a Prominent Human Gut Symbiont Targets Complex Starch Molecules.
Structure, 18, 2010
4FCH
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BU of 4fch by Molmil
Crystal Structure SusE from Bacteroides thetaiotaomicron with maltoheptaose
分子名称: 1,2-ETHANEDIOL, Outer membrane protein SusE, SULFATE ION, ...
著者Koropatkin, N.M, Cameron, E.A, Martens, E.C.
登録日2012-05-24
公開日2012-08-29
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Multidomain Carbohydrate-binding Proteins Involved in Bacteroides thetaiotaomicron Starch Metabolism.
J.Biol.Chem., 287, 2012
4FEM
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BU of 4fem by Molmil
Structure of SusE with alpha-cyclodextrin
分子名称: 1,2-ETHANEDIOL, Cyclohexakis-(1-4)-(alpha-D-glucopyranose), Outer membrane protein SusE
著者Koropatkin, N.M, Cameron, E.A, Martens, E.C.
登録日2012-05-30
公開日2012-08-29
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Multidomain Carbohydrate-binding Proteins Involved in Bacteroides thetaiotaomicron Starch Metabolism.
J.Biol.Chem., 287, 2012
4FE9
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BU of 4fe9 by Molmil
Crystal Structure of SusF from Bacteroides thetaiotaomicron
分子名称: 1,2-ETHANEDIOL, Cyclic alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-3)-alpha-D-glucopyranose, GLYCEROL, ...
著者Koropatkin, N.M, Cameron, E.A, Martens, E.C.
登録日2012-05-29
公開日2012-08-29
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Multidomain Carbohydrate-binding Proteins Involved in Bacteroides thetaiotaomicron Starch Metabolism.
J.Biol.Chem., 287, 2012
5CK1
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BU of 5ck1 by Molmil
selenomethionine BT4246
分子名称: 1,2-ETHANEDIOL, CALCIUM ION, SusD homolog
著者Koropatkin, N.M.
登録日2015-07-15
公開日2016-10-12
実験手法X-RAY DIFFRACTION (1.835 Å)
主引用文献Mechanistic insight into mucin degradation by the human gut microbiota reveals targeting of the glycoprotein core
to be published
7JJN
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BU of 7jjn by Molmil
Eubacterium rectale Amy13B (EUR_01860)
分子名称: 1,2-ETHANEDIOL, CALCIUM ION, GLYCEROL, ...
著者Koropatkin, N.M, Cockburn, D.W, Cerqueira, F.M.
登録日2020-07-27
公開日2021-06-23
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献The structures of the GH13_36 amylases from Eubacterium rectale and Ruminococcus bromii reveal subsite architectures that favor maltose production
Amylase, 4, 2020
5VOL
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BU of 5vol by Molmil
Bacint_04212 ferulic acid esterase
分子名称: CALCIUM ION, ISOPROPYL ALCOHOL, Putative esterase
著者Koropatkin, N.M, Cann, I, Mackie, R.I.
登録日2017-05-03
公開日2017-07-19
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.98 Å)
主引用文献Biochemical and Structural Analyses of Two Cryptic Esterases in Bacteroides intestinalis and their Synergistic Activities with Cognate Xylanases.
J. Mol. Biol., 429, 2017
5WH8
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BU of 5wh8 by Molmil
Cellulase Cel5C_n
分子名称: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, PENTAETHYLENE GLYCOL, ...
著者Koropatkin, N.M, Pope, P.B, Naas, A.E.
登録日2017-07-15
公開日2018-03-14
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.57 Å)
主引用文献"Candidatus Paraporphyromonas polyenzymogenes" encodes multi-modular cellulases linked to the type IX secretion system.
Microbiome, 6, 2018
6MLY
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BU of 6mly by Molmil
Bifunctional GH43-CE Bacteroides eggerthii, BACEGG_01304
分子名称: 1,2-ETHANEDIOL, ACETATE ION, Bifunctional GH43-CE protein, ...
著者Koropatkin, N.M, Pereira, G.V, Cann, I.
登録日2018-09-28
公開日2019-10-02
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Degradation of complex arabinoxylans by human colonic Bacteroidetes
Nat Commun, 2021
6MOT
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BU of 6mot by Molmil
Bacteroides intestinalis feruloyl esterase, Bacint_01033
分子名称: 1,2-ETHANEDIOL, Isoamylase N-terminal domain protein
著者Koropatkin, N.M, Pereira, G.V, Cann, I.
登録日2018-10-04
公開日2019-10-16
最終更新日2021-01-27
実験手法X-RAY DIFFRACTION (1.71 Å)
主引用文献Degradation of complex arabinoxylans by human colonic Bacteroidetes
Nat Commun, 2021

 

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