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PDB: 71 件
5E75
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BU of 5e75 by Molmil
Crystal structure of Bacova_02651
分子名称: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, ...
著者Koropatkin, N.M.
登録日2015-10-11
公開日2016-05-04
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.36 Å)
主引用文献Molecular Dissection of Xyloglucan Recognition in a Prominent Human Gut Symbiont.
Mbio, 7, 2016
2G29
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BU of 2g29 by Molmil
crystal structure of the periplasmic nitrate-binding protein NrtA from Synechocystis PCC 6803
分子名称: NITRATE ION, Nitrate transport protein nrtA
著者Koropatkin, N.M, Pakrasi, H.B, Smith, T.J.
登録日2006-02-15
公開日2006-07-11
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Atomic structure of a nitrate-binding protein crucial for photosynthetic productivity
Proc.Natl.Acad.Sci.Usa, 103, 2006
4FCH
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BU of 4fch by Molmil
Crystal Structure SusE from Bacteroides thetaiotaomicron with maltoheptaose
分子名称: 1,2-ETHANEDIOL, Outer membrane protein SusE, SULFATE ION, ...
著者Koropatkin, N.M, Cameron, E.A, Martens, E.C.
登録日2012-05-24
公開日2012-08-29
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Multidomain Carbohydrate-binding Proteins Involved in Bacteroides thetaiotaomicron Starch Metabolism.
J.Biol.Chem., 287, 2012
4FE9
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BU of 4fe9 by Molmil
Crystal Structure of SusF from Bacteroides thetaiotaomicron
分子名称: 1,2-ETHANEDIOL, Cyclic alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-3)-alpha-D-glucopyranose, GLYCEROL, ...
著者Koropatkin, N.M, Cameron, E.A, Martens, E.C.
登録日2012-05-29
公開日2012-08-29
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Multidomain Carbohydrate-binding Proteins Involved in Bacteroides thetaiotaomicron Starch Metabolism.
J.Biol.Chem., 287, 2012
4UAC
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BU of 4uac by Molmil
EUR_01830 with acarbose
分子名称: 1,2-ETHANEDIOL, 4,6-dideoxy-4-{[(1S,4R,5S,6S)-4,5,6-trihydroxy-3-(hydroxymethyl)cyclohex-2-en-1-yl]amino}-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose, Carbohydrate ABC transporter substrate-binding protein, ...
著者Koropatkin, N.M, Orlovsky, N.I.
登録日2014-08-08
公開日2014-12-10
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Molecular details of a starch utilization pathway in the human gut symbiont Eubacterium rectale.
Mol.Microbiol., 95, 2015
4UA8
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BU of 4ua8 by Molmil
EUR_01830 (maltotriose-binding protein) complexed with maltotriose
分子名称: 1,2-ETHANEDIOL, Carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-), ...
著者Koropatkin, N.M, Orlovsky, N.I.
登録日2014-08-08
公開日2014-12-03
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.54 Å)
主引用文献Molecular details of a starch utilization pathway in the human gut symbiont Eubacterium rectale.
Mol.Microbiol., 95, 2015
6DHT
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BU of 6dht by Molmil
Bacteroides ovatus GH9 Bacova_02649
分子名称: 1,2-ETHANEDIOL, CALCIUM ION, CHLORIDE ION, ...
著者Koropatkin, N.M, Foley, M.H.
登録日2018-05-21
公開日2019-04-03
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.42 Å)
主引用文献A Cell-Surface GH9 Endo-Glucanase Coordinates with Surface Glycan-Binding Proteins to Mediate Xyloglucan Uptake in the Gut Symbiont Bacteroides ovatus.
J. Mol. Biol., 431, 2019
6DK2
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BU of 6dk2 by Molmil
Bacteroidetes AC2a SusD-like
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, SULFATE ION, ...
著者Koropatkin, N.M.
登録日2018-05-28
公開日2018-08-01
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.02 Å)
主引用文献To Be Published
To Be Published
6DMF
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BU of 6dmf by Molmil
Bacteroides ovatus mixed-linkage glucan utilization locus (MLGUL) SGBP-A with cellohexaose
分子名称: 1,2-ETHANEDIOL, ACETATE ION, DI(HYDROXYETHYL)ETHER, ...
著者Koropatkin, N.M, Bahr, C.M.
登録日2018-06-05
公開日2019-05-29
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Surface glycan-binding proteins are essential for cereal beta-glucan utilization by the human gut symbiont Bacteroides ovatus.
Cell.Mol.Life Sci., 76, 2019
1ORR
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BU of 1orr by Molmil
Crystal Structure of CDP-Tyvelose 2-Epimerase complexed with NAD and CDP
分子名称: CDP-tyvelose-2-epimerase, CYTIDINE-5'-DIPHOSPHATE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
著者Koropatkin, N.M, Liu, H, Holden, H.M.
登録日2003-03-14
公開日2003-08-26
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献High Resolution X-ray Structure of Tyvelose Epimerase from Salmonella typhi
J.Biol.Chem., 278, 2003
7RFT
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BU of 7rft by Molmil
Domain 1 of Starch adherence system protein 20 (Sas20) from Ruminococcus bromii with maltotriose
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, Dockerin domain-containing protein, ...
著者Koropatkin, N, Cerqueira, F.
登録日2021-07-14
公開日2022-04-13
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.53 Å)
主引用文献Sas20 is a highly flexible starch-binding protein in the Ruminococcus bromii cell-surface amylosome.
J.Biol.Chem., 298, 2022
3CKC
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BU of 3ckc by Molmil
B. thetaiotaomicron SusD
分子名称: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, ...
著者Koropatkin, N.M, Martens, E.C, Gordon, J.I, Smith, T.J.
登録日2008-03-14
公開日2008-04-01
最終更新日2017-10-25
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Starch catabolism by a prominent human gut symbiont is directed by the recognition of amylose helices.
Structure, 16, 2008
4FEM
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BU of 4fem by Molmil
Structure of SusE with alpha-cyclodextrin
分子名称: 1,2-ETHANEDIOL, Cyclohexakis-(1-4)-(alpha-D-glucopyranose), Outer membrane protein SusE
著者Koropatkin, N.M, Cameron, E.A, Martens, E.C.
登録日2012-05-30
公開日2012-08-29
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Multidomain Carbohydrate-binding Proteins Involved in Bacteroides thetaiotaomicron Starch Metabolism.
J.Biol.Chem., 287, 2012
1TZF
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BU of 1tzf by Molmil
X-ray Crystal Structure of alpha-D-glucose-1-phosphate cytidylyltransferase from Salmonella typhi
分子名称: Glucose-1-phosphate cytidylyltransferase, MAGNESIUM ION, [CYTIDINE-5'-PHOSPHATE]-BETA-GLUCOSYL-PHOSPHORIC ACID ESTER
著者Koropatkin, N.M, Holden, H.M.
登録日2004-07-09
公開日2004-09-07
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献Molecular structure of alpha-D-glucose-1-phosphate cytidylyltransferase from Salmonella typhi
J.Biol.Chem., 279, 2004
2PT2
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BU of 2pt2 by Molmil
Structure of FutA1 with Iron(II)
分子名称: 1,2-ETHANEDIOL, FE (II) ION, Iron transport protein, ...
著者Koropatkin, N.M, Randich, A.M, Bhattachryya-Pakrasi, M, Pakrasi, H.B, Smith, T.J.
登録日2007-05-07
公開日2007-07-10
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献The structure of the iron-binding protein, FutA1, from Synechocystis 6803.
J.Biol.Chem., 282, 2007
2PT1
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FutA1 Synechocystis PCC 6803
分子名称: Iron transport protein, SULFATE ION
著者Koropatkin, N.M, Randich, A.M, Bhattachryya-Pakrasi, M, Pakrasi, H.B, Smith, T.J.
登録日2007-05-07
公開日2007-07-10
最終更新日2023-08-30
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献The structure of the iron-binding protein, FutA1, from Synechocystis 6803.
J.Biol.Chem., 282, 2007
5WH8
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BU of 5wh8 by Molmil
Cellulase Cel5C_n
分子名称: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, PENTAETHYLENE GLYCOL, ...
著者Koropatkin, N.M, Pope, P.B, Naas, A.E.
登録日2017-07-15
公開日2018-03-14
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.57 Å)
主引用文献"Candidatus Paraporphyromonas polyenzymogenes" encodes multi-modular cellulases linked to the type IX secretion system.
Microbiome, 6, 2018
5VOL
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BU of 5vol by Molmil
Bacint_04212 ferulic acid esterase
分子名称: CALCIUM ION, ISOPROPYL ALCOHOL, Putative esterase
著者Koropatkin, N.M, Cann, I, Mackie, R.I.
登録日2017-05-03
公開日2017-07-19
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.98 Å)
主引用文献Biochemical and Structural Analyses of Two Cryptic Esterases in Bacteroides intestinalis and their Synergistic Activities with Cognate Xylanases.
J. Mol. Biol., 429, 2017
5E7H
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BU of 5e7h by Molmil
Crystal structure of domains CD (residues 230-489) of Bacova_02650
分子名称: ACETATE ION, FORMIC ACID, IPT/TIG domain-containing protein BACOVA_02650, ...
著者Koropatkin, N.M.
登録日2015-10-12
公開日2016-05-04
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.57 Å)
主引用文献Molecular Dissection of Xyloglucan Recognition in a Prominent Human Gut Symbiont.
Mbio, 7, 2016
5E7G
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BU of 5e7g by Molmil
Crystal structure of Bacova_02650 with xylogluco-oligosaccharide
分子名称: 1,2-ETHANEDIOL, CALCIUM ION, IPT/TIG domain-containing protein BACOVA_02650, ...
著者Koropatkin, N.M.
登録日2015-10-12
公開日2016-05-04
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (2.37 Å)
主引用文献Molecular Dissection of Xyloglucan Recognition in a Prominent Human Gut Symbiont.
Mbio, 7, 2016
1WVC
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BU of 1wvc by Molmil
alpha-D-glucose-1-phosphate cytidylyltransferase complexed with CTP
分子名称: CYTIDINE-5'-TRIPHOSPHATE, Glucose-1-phosphate cytidylyltransferase, MAGNESIUM ION, ...
著者Koropatkin, N.M, Cleland, W.W, Holden, H.M.
登録日2004-12-14
公開日2005-01-11
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Kinetic and structural analysis of alpha-D-Glucose-1-phosphate cytidylyltransferase from Salmonella typhi.
J.Biol.Chem., 280, 2005
5E76
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BU of 5e76 by Molmil
Crystal structure of Bacova_02651 with xylogluco-oligosaccharide
分子名称: 1,2-ETHANEDIOL, CHLORIDE ION, SODIUM ION, ...
著者Koropatkin, N.M.
登録日2015-10-11
公開日2016-05-11
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Molecular Dissection of Xyloglucan Recognition in a Prominent Human Gut Symbiont.
Mbio, 7, 2016
1WVG
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BU of 1wvg by Molmil
Structure of CDP-D-glucose 4,6-dehydratase from Salmonella typhi
分子名称: ADENOSINE-5-DIPHOSPHORIBOSE, CDP-glucose 4,6-dehydratase, CYTIDINE-5'-DIPHOSPHO-BETA-D-XYLOSE
著者Koropatkin, N.M, Holden, H.M.
登録日2004-12-15
公開日2005-01-26
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structure of CDP-D-glucose 4,6-dehydratase from Salmonella typhi complexed with CDP-D-xylose.
Acta Crystallogr.,Sect.D, 61, 2005
6E57
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BU of 6e57 by Molmil
Bacteroides ovatus mixed-linkage glucan utilization locus (MLGUL) SGBP-B in complex with mixed-linkage heptasaccharide
分子名称: 1,2-ETHANEDIOL, PHOSPHATE ION, SODIUM ION, ...
著者Koropatkin, N.M, Schnizlein, M, Bahr, C.M.E.
登録日2018-07-19
公開日2019-05-29
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.71 Å)
主引用文献Surface glycan-binding proteins are essential for cereal beta-glucan utilization by the human gut symbiont Bacteroides ovatus.
Cell.Mol.Life Sci., 76, 2019
5J5U
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BU of 5j5u by Molmil
Fjoh_4561 chitin-binding protein
分子名称: RagB/SusD domain protein
著者Koropatkin, N.M.
登録日2016-04-03
公開日2017-02-08
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献A polysaccharide utilization locus from Flavobacterium johnsoniae enables conversion of recalcitrant chitin.
Biotechnol Biofuels, 9, 2016

 

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