1V3O
 
 | | Crystal structure of d(GCGAGAGC): the DNA quadruplex structure split from the octaplex | | Descriptor: | 5'-D(*GP*(C38)P*GP*AP*GP*AP*GP*C)-3', POTASSIUM ION | | Authors: | Kondo, J, Umeda, S, Sunami, T, Takenaka, A. | | Deposit date: | 2003-11-03 | | Release date: | 2004-06-08 | | Last modified: | 2023-10-25 | | Method: | X-RAY DIFFRACTION (1.7 Å) | | Cite: | Crystal structures of a DNA octaplex with I-motif of G-quartets and its splitting into two quadruplexes suggest a folding mechanism of eight tandem repeats
Nucleic Acids Res., 32, 2004
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1V3N
 | | Crystal structure of d(GCGAGAGC): the DNA quadruplex structure split from the octaplex | | Descriptor: | 5'-D(*GP*(CBR)P*GP*AP*GP*AP*GP*C)-3', POTASSIUM ION | | Authors: | Kondo, J, Umeda, S, Sunami, T, Takenaka, A. | | Deposit date: | 2003-11-03 | | Release date: | 2004-06-08 | | Last modified: | 2023-12-27 | | Method: | X-RAY DIFFRACTION (1.8 Å) | | Cite: | Crystal structures of a DNA octaplex with I-motif of G-quartets and its splitting into two quadruplexes suggest a folding mechanism of eight tandem repeats
Nucleic Acids Res., 32, 2004
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1V3P
 | | Crystal structure of d(GCGAGAGC): the DNA octaplex structure with I-motif of G-quartet | | Descriptor: | 5'-D(*GP*(C38)P*GP*AP*GP*AP*GP*C)-3', POTASSIUM ION | | Authors: | Kondo, J, Umeda, S, Sunami, T, Takenaka, A. | | Deposit date: | 2003-11-03 | | Release date: | 2004-06-08 | | Last modified: | 2023-10-25 | | Method: | X-RAY DIFFRACTION (2.3 Å) | | Cite: | Crystal structures of a DNA octaplex with I-motif of G-quartets and its splitting into two quadruplexes suggest a folding mechanism of eight tandem repeats
Nucleic Acids Res., 32, 2004
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3TD1
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3TD0
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2FQN
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2FZA
 | | Crystal structure of d(GCGGGAGC): the base-intercalated duplex | | Descriptor: | 5'-D(*GP*(CBR)P*GP*GP*GP*AP*GP*C)-3', CALCIUM ION, SODIUM ION | | Authors: | Kondo, J, Ciengshin, T, Juan, E.C.M, Mitomi, K, Takenaka, A. | | Deposit date: | 2006-02-09 | | Release date: | 2007-01-23 | | Last modified: | 2024-03-13 | | Method: | X-RAY DIFFRACTION (3.6 Å) | | Cite: | Crystal structure of d(gcGXGAgc) with X=G: a mutation at X is possible to occur in a base-intercalated duplex for multiplex formation
Nucleosides Nucleotides Nucleic Acids, 25, 2006
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2G5K
 | | Crystal Structure of the Homo sapiens Cytoplasmic Ribosomal Decoding Site complexed with Apramycin | | Descriptor: | 5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3', APRAMYCIN, COBALT HEXAMMINE(III), ... | | Authors: | Kondo, J, Francois, B, Urzhumtsev, A, Westhof, E. | | Deposit date: | 2006-02-23 | | Release date: | 2006-06-20 | | Last modified: | 2024-03-13 | | Method: | X-RAY DIFFRACTION (2.8 Å) | | Cite: | Crystal Structure of the Homo sapiens Cytoplasmic Ribosomal Decoding Site Complexed with Apramycin
Angew.Chem.Int.Ed.Engl., 45, 2006
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7EFG
 | | RNA kink-turn motif | | Descriptor: | RNA (5'-R(*GP*GP*CP*GP*AP*AP*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3') | | Authors: | Kondo, J, Nagashima, M. | | Deposit date: | 2021-03-21 | | Release date: | 2022-04-13 | | Last modified: | 2023-11-29 | | Method: | X-RAY DIFFRACTION (2.6 Å) | | Cite: | RNA kink-turn motif
To Be Published
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2GOT
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7BSG
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7BSF
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7BSE
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7EAQ
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7EAY
 | | DNA containing Cu(II)-mediated 4-N-carboxymethylcytosine base pairs | | Descriptor: | COBALT (II) ION, COBALT HEXAMMINE(III), COPPER (II) ION, ... | | Authors: | Kondo, J, Terashima, A, Yoshimura, A, Tada, Y, Ono, A. | | Deposit date: | 2021-03-08 | | Release date: | 2022-03-09 | | Last modified: | 2024-05-29 | | Method: | X-RAY DIFFRACTION (2.5 Å) | | Cite: | DNA containing Cu(II)-mediated 4-N-carboxymethylcytosine base pairs
To Be Published
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7ECO
 | | RNA duplex containing U-Ag-U base pairs | | Descriptor: | RNA (5'-R(*GP*GP*GP*UP*CP*CP*GP*GP*UP*CP*CP*C)-3'), SILVER ION | | Authors: | Kondo, J, Tsudura, A. | | Deposit date: | 2021-03-12 | | Release date: | 2022-03-16 | | Last modified: | 2024-05-29 | | Method: | X-RAY DIFFRACTION (1.81 Å) | | Cite: | RNA duplex containing U-Ag-U base pairs
To Be Published
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7ECN
 | | RNA duplex containing C-Ag-A base pairs | | Descriptor: | RNA (5'-R(*GP*GP*GP*CP*CP*CP*GP*GP*AP*CP*CP*C)-3'), SILVER ION | | Authors: | Kondo, J, Tsudura, A. | | Deposit date: | 2021-03-12 | | Release date: | 2022-03-16 | | Last modified: | 2024-05-29 | | Method: | X-RAY DIFFRACTION (1.6 Å) | | Cite: | RNA duplex containing C-Ag-A base pairs
To Be Published
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7EDL
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7EDM
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7ECP
 | | RNA duplex containing C-Ag-U | | Descriptor: | RNA (5'-R(*GP*GP*GP*CP*CP*CP*GP*GP*UP*CP*CP*C)-3'), SILVER ION | | Authors: | Kondo, J, Tsudura, A. | | Deposit date: | 2021-03-12 | | Release date: | 2022-03-16 | | Last modified: | 2024-05-29 | | Method: | X-RAY DIFFRACTION (2.91 Å) | | Cite: | RNA duplex containing C-Ag-U
To Be Published
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7EDN
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7ECK
 | | RNA duplex containing C-Ag-A and U-Ag-A base pairs | | Descriptor: | DNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3'), SILVER ION | | Authors: | Kondo, J, Uchida, Y. | | Deposit date: | 2021-03-12 | | Release date: | 2022-03-16 | | Last modified: | 2024-05-29 | | Method: | X-RAY DIFFRACTION (2.79 Å) | | Cite: | RNA duplex containing C-Ag-A and U-Ag-A base pairs
To Be Published
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7ECM
 | | RNA duplex containing C-A base pair | | Descriptor: | BARIUM ION, RNA (5'-R(*GP*GP*GP*CP*CP*CP*GP*GP*AP*CP*CP*C)-3') | | Authors: | Kondo, J, Tsudura, A. | | Deposit date: | 2021-03-12 | | Release date: | 2022-03-16 | | Last modified: | 2024-05-29 | | Method: | X-RAY DIFFRACTION (1.51 Å) | | Cite: | RNA duplex containing C-A base pair
To Be Published
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7EEO
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7ECJ
 | | RNA duplex containing C-A base pairs | | Descriptor: | DNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3') | | Authors: | Kondo, J, Uchida, Y. | | Deposit date: | 2021-03-12 | | Release date: | 2022-03-16 | | Last modified: | 2024-05-29 | | Method: | X-RAY DIFFRACTION (3.1 Å) | | Cite: | RNA duplex containing C-A base pairs
To Be Published
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