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PDB: 121 件
1V3O
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BU of 1v3o by Molmil
Crystal structure of d(GCGAGAGC): the DNA quadruplex structure split from the octaplex
分子名称: 5'-D(*GP*(C38)P*GP*AP*GP*AP*GP*C)-3', POTASSIUM ION
著者Kondo, J, Umeda, S, Sunami, T, Takenaka, A.
登録日2003-11-03
公開日2004-06-08
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Crystal structures of a DNA octaplex with I-motif of G-quartets and its splitting into two quadruplexes suggest a folding mechanism of eight tandem repeats
Nucleic Acids Res., 32, 2004
1V3N
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BU of 1v3n by Molmil
Crystal structure of d(GCGAGAGC): the DNA quadruplex structure split from the octaplex
分子名称: 5'-D(*GP*(CBR)P*GP*AP*GP*AP*GP*C)-3', POTASSIUM ION
著者Kondo, J, Umeda, S, Sunami, T, Takenaka, A.
登録日2003-11-03
公開日2004-06-08
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structures of a DNA octaplex with I-motif of G-quartets and its splitting into two quadruplexes suggest a folding mechanism of eight tandem repeats
Nucleic Acids Res., 32, 2004
1V3P
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BU of 1v3p by Molmil
Crystal structure of d(GCGAGAGC): the DNA octaplex structure with I-motif of G-quartet
分子名称: 5'-D(*GP*(C38)P*GP*AP*GP*AP*GP*C)-3', POTASSIUM ION
著者Kondo, J, Umeda, S, Sunami, T, Takenaka, A.
登録日2003-11-03
公開日2004-06-08
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structures of a DNA octaplex with I-motif of G-quartets and its splitting into two quadruplexes suggest a folding mechanism of eight tandem repeats
Nucleic Acids Res., 32, 2004
3TD1
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BU of 3td1 by Molmil
Crystal structure of the bacterial A1408G-mutant and the protozoa cytoplasmic ribosomal decoding site in complex with geneticin
分子名称: GENETICIN, RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*GP*(5BU)P*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')
著者Kondo, J.
登録日2011-08-10
公開日2011-12-07
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献A structural basis for the antibiotic resistance conferred by an A1408G mutation in 16S rRNA and for the antiprotozoal activity of aminoglycosides
Angew.Chem.Int.Ed.Engl., 51, 2012
3TD0
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BU of 3td0 by Molmil
Crystal structure of the bacterial A1408G-mutant and the protozoa cytoplasmic ribosomal decoding site
分子名称: MAGNESIUM ION, RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*GP*(5BU)P*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')
著者Kondo, J.
登録日2011-08-10
公開日2011-12-07
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献A structural basis for the antibiotic resistance conferred by an A1408G mutation in 16S rRNA and for the antiprotozoal activity of aminoglycosides
Angew.Chem.Int.Ed.Engl., 51, 2012
2FQN
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BU of 2fqn by Molmil
Crystal structure of the Homo sapiens cytoplasmic ribosomal decoding A site
分子名称: 5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3', COBALT HEXAMMINE(III), MAGNESIUM ION
著者Kondo, J, Urzhumtsev, A, Westhof, E.
登録日2006-01-18
公開日2006-02-14
最終更新日2024-02-14
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Two conformational states in the crystal structure of the Homo sapiens cytoplasmic ribosomal decoding A site.
Nucleic Acids Res., 34, 2006
2FZA
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BU of 2fza by Molmil
Crystal structure of d(GCGGGAGC): the base-intercalated duplex
分子名称: 5'-D(*GP*(CBR)P*GP*GP*GP*AP*GP*C)-3', CALCIUM ION, SODIUM ION
著者Kondo, J, Ciengshin, T, Juan, E.C.M, Mitomi, K, Takenaka, A.
登録日2006-02-09
公開日2007-01-23
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (3.6 Å)
主引用文献Crystal structure of d(gcGXGAgc) with X=G: a mutation at X is possible to occur in a base-intercalated duplex for multiplex formation
Nucleosides Nucleotides Nucleic Acids, 25, 2006
2G5K
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BU of 2g5k by Molmil
Crystal Structure of the Homo sapiens Cytoplasmic Ribosomal Decoding Site complexed with Apramycin
分子名称: 5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*CP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3', APRAMYCIN, COBALT HEXAMMINE(III), ...
著者Kondo, J, Francois, B, Urzhumtsev, A, Westhof, E.
登録日2006-02-23
公開日2006-06-20
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Crystal Structure of the Homo sapiens Cytoplasmic Ribosomal Decoding Site Complexed with Apramycin
Angew.Chem.Int.Ed.Engl., 45, 2006
7EFG
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BU of 7efg by Molmil
RNA kink-turn motif
分子名称: RNA (5'-R(*GP*GP*CP*GP*AP*AP*GP*AP*AP*CP*CP*GP*GP*GP*GP*AP*GP*CP*C)-3')
著者Kondo, J, Nagashima, M.
登録日2021-03-21
公開日2022-04-13
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献RNA kink-turn motif
To Be Published
2GOT
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BU of 2got by Molmil
Crystal structure of d(GCGAACGC): two types of bulge-containing duplexes
分子名称: DNA (5'-D(*DGP*(CBR)P*DGP*DAP*DAP*DCP*DGP*DC)-3')
著者Kondo, J, Sunami, T, Takenaka, A.
登録日2006-04-14
公開日2007-04-24
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.602 Å)
主引用文献The structure of a d(gcGAACgc) duplex containing two consecutive bulged A residues in both strands suggests a molecular switch
Acta Crystallogr.,Sect.D, 63, 2007
7BSG
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BU of 7bsg by Molmil
Crystal structure of a NIR-emitting DNA-stabilized Ag16 nanocluster (T5G mutant)
分子名称: DNA (5'-D(*CP*AP*CP*CP*GP*AP*GP*CP*GP*A)-3'), SILVER ION
著者Kondo, J, Cerretani, C, Vosch, T.
登録日2020-03-30
公開日2020-12-16
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.19 Å)
主引用文献Mutation of position 5 as a crystal engineering tool for a NIR-emitting DNA-stabilized Ag16 nanocluster.
CrystEngComm, 22, 2020
7BSF
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BU of 7bsf by Molmil
Crystal structure of a NIR-emitting DNA-stabilized Ag16 nanocluster (T5C mutant)
分子名称: CALCIUM ION, DNA (5'-D(*CP*AP*CP*CP*CP*AP*GP*CP*GP*A)-3'), SILVER ION
著者Kondo, J, Cerretani, C, Vosch, T.
登録日2020-03-30
公開日2020-12-16
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.1 Å)
主引用文献Mutation of position 5 as a crystal engineering tool for a NIR-emitting DNA-stabilized Ag16 nanocluster.
CrystEngComm, 22, 2020
7BSE
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BU of 7bse by Molmil
Crystal structure of a NIR-emitting DNA-stabilized Ag16 nanocluster (T5A mutant)
分子名称: CALCIUM ION, DNA (5'-D(*CP*AP*CP*CP*AP*AP*GP*CP*GP*A)-3'), SILVER ION
著者Kondo, J, Cerretani, C, Vosch, T.
登録日2020-03-30
公開日2020-12-16
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Mutation of position 5 as a crystal engineering tool for a NIR-emitting DNA-stabilized Ag16 nanocluster.
CrystEngComm, 22, 2020
7EAQ
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BU of 7eaq by Molmil
DNA quadruplex composed of i-motif and Z-DNA
分子名称: DNA (5'-D(*CP*GP*CP*GP*AP*CP*CP*TP*CP*GP*CP*G)-3')
著者Kondo, J, Igarashi, Y.
登録日2021-03-08
公開日2022-03-09
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.39 Å)
主引用文献DNA quadruplex composed of i-motif and Z-DNA
To Be Published
7EAY
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BU of 7eay by Molmil
DNA containing Cu(II)-mediated 4-N-carboxymethylcytosine base pairs
分子名称: COBALT (II) ION, COBALT HEXAMMINE(III), COPPER (II) ION, ...
著者Kondo, J, Terashima, A, Yoshimura, A, Tada, Y, Ono, A.
登録日2021-03-08
公開日2022-03-09
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献DNA containing Cu(II)-mediated 4-N-carboxymethylcytosine base pairs
To Be Published
7ECO
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BU of 7eco by Molmil
RNA duplex containing U-Ag-U base pairs
分子名称: RNA (5'-R(*GP*GP*GP*UP*CP*CP*GP*GP*UP*CP*CP*C)-3'), SILVER ION
著者Kondo, J, Tsudura, A.
登録日2021-03-12
公開日2022-03-16
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.81 Å)
主引用文献RNA duplex containing U-Ag-U base pairs
To Be Published
7ECN
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BU of 7ecn by Molmil
RNA duplex containing C-Ag-A base pairs
分子名称: RNA (5'-R(*GP*GP*GP*CP*CP*CP*GP*GP*AP*CP*CP*C)-3'), SILVER ION
著者Kondo, J, Tsudura, A.
登録日2021-03-12
公開日2022-03-16
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献RNA duplex containing C-Ag-A base pairs
To Be Published
7EDL
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BU of 7edl by Molmil
Crystal structure of the bacterial ribosomal decoding site in complex with G418 and Hg(II)
分子名称: GENETICIN, MERCURY (II) ION, RNA (5'-R(P*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')
著者Kondo, J, Suzuki, C.
登録日2021-03-16
公開日2022-03-16
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystal structure of the prokaryotic ribosomal decoding site in complex with G418 and Hg(II)
To Be Published
7EDM
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BU of 7edm by Molmil
Crystal structure of the eukaryotic ribosomal decoding site in complex with G418 and Hg(II)
分子名称: GENETICIN, MERCURY (II) ION, RNA (5'-R(P*UP*GP*CP*GP*UP*CP*GP*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3')
著者Kondo, J, Suzuki, C.
登録日2021-03-16
公開日2022-03-16
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.81 Å)
主引用文献Crystal structure of the eukaryotic ribosomal decoding site in complex with G418 and Hg(II)
To Be Published
7ECP
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BU of 7ecp by Molmil
RNA duplex containing C-Ag-U
分子名称: RNA (5'-R(*GP*GP*GP*CP*CP*CP*GP*GP*UP*CP*CP*C)-3'), SILVER ION
著者Kondo, J, Tsudura, A.
登録日2021-03-12
公開日2022-03-16
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.91 Å)
主引用文献RNA duplex containing C-Ag-U
To Be Published
7EDN
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BU of 7edn by Molmil
Crystal structure of the eukaryotic decoding site in complex with Ag(I)
分子名称: CALCIUM ION, RNA (5'-R(P*UP*GP*CP*GP*UP*CP*GP*CP*GP*UP*CP*GP*AP*CP*GP*AP*AP*GP*UP*CP*GP*C)-3'), SILVER ION
著者Kondo, J, Suzuki, C.
登録日2021-03-16
公開日2022-03-16
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Crystal structure of the eukaryotic decoding site in complex with Ag(I)
To Be Published
7ECK
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BU of 7eck by Molmil
RNA duplex containing C-Ag-A and U-Ag-A base pairs
分子名称: DNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3'), SILVER ION
著者Kondo, J, Uchida, Y.
登録日2021-03-12
公開日2022-03-16
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.79 Å)
主引用文献RNA duplex containing C-Ag-A and U-Ag-A base pairs
To Be Published
7ECM
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BU of 7ecm by Molmil
RNA duplex containing C-A base pair
分子名称: BARIUM ION, RNA (5'-R(*GP*GP*GP*CP*CP*CP*GP*GP*AP*CP*CP*C)-3')
著者Kondo, J, Tsudura, A.
登録日2021-03-12
公開日2022-03-16
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (1.51 Å)
主引用文献RNA duplex containing C-A base pair
To Be Published
7EEO
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BU of 7eeo by Molmil
Bulged-G motif composed of RNA, DNA and 2'-O-methyl RNA
分子名称: COBALT HEXAMMINE(III), DNA/RNA (27-MER)
著者Kondo, J, Sekiguchi, S.
登録日2021-03-19
公開日2022-03-23
最終更新日2023-11-29
実験手法X-RAY DIFFRACTION (2.701 Å)
主引用文献Bulged-G motif composed of RNA, DNA and 2'-O-methyl RNA
To Be Published
7ECJ
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BU of 7ecj by Molmil
RNA duplex containing C-A base pairs
分子名称: DNA/RNA (5'-R(*GP*GP*AP*CP*U)-D(P*(CBR))-R(P*GP*AP*AP*UP*CP*C)-3')
著者Kondo, J, Uchida, Y.
登録日2021-03-12
公開日2022-03-16
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (3.1 Å)
主引用文献RNA duplex containing C-A base pairs
To Be Published

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件を2024-07-24に公開中

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