2UWM
| C-TERMINAL DOMAIN(WH2-WH4) OF ELONGATION FACTOR SELB IN COMPLEX WITH SECIS RNA | Descriptor: | 5'-R(*GP*GP*CP*GP*UP*UP*GP*CP*CP*GP *GP*UP*CP*UP*GP*GP*CP*AP*AP*CP*GP*CP*C)-3', SELENOCYSTEINE-SPECIFIC ELONGATION FACTOR | Authors: | Ose, T, Soler, N, Rasubala, L, Kuroki, K, Kohda, D, Fourmy, D, Yoshizawa, S, Maenaka, K. | Deposit date: | 2007-03-22 | Release date: | 2007-05-08 | Last modified: | 2023-12-13 | Method: | X-RAY DIFFRACTION (2.31 Å) | Cite: | Structural Basis for Dynamic Interdomain Movement and RNA Recognition of the Selenocysteine-Specific Elongation Factor Selb. Structure, 15, 2007
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1TCH
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1TCK
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1WSU
| C-terminal domain of elongation factor selB complexed with SECIS RNA | Descriptor: | 5'-R(*GP*GP*CP*GP*UP*UP*GP*CP*CP*GP*GP*UP*CP*U*GP*GP*CP*AP*AP*CP*GP*CP*C)-3', Selenocysteine-specific elongation factor | Authors: | Yoshizawa, S, Rasubala, L, Ose, T, Kohda, D, Fourmy, D, Maenaka, K. | Deposit date: | 2004-11-11 | Release date: | 2005-01-25 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Structural basis for mRNA recognition by elongation factor SelB Nat.Struct.Mol.Biol., 12, 2005
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1K4U
| Solution structure of the C-terminal SH3 domain of p67phox complexed with the C-terminal tail region of p47phox | Descriptor: | PHAGOCYTE NADPH OXIDASE SUBUNIT P47PHOX, PHAGOCYTE NADPH OXIDASE SUBUNIT P67PHOX | Authors: | Kami, K, Takeya, R, Sumimoto, H, Kohda, D. | Deposit date: | 2001-10-08 | Release date: | 2002-04-08 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | Diverse recognition of non-PxxP peptide ligands by the SH3 domains from p67(phox), Grb2 and Pex13p. EMBO J., 21, 2002
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1L4V
| SOLUTION STRUCTURE OF SAPECIN | Descriptor: | Sapecin | Authors: | Hanzawa, H, Iwai, H, Takeuchi, K, Kuzuhara, T, Komano, H, Kohda, D, Inagaki, F, Natori, S, Arata, Y, Shimada, I. | Deposit date: | 2002-03-06 | Release date: | 2002-03-27 | Last modified: | 2022-02-23 | Method: | SOLUTION NMR | Cite: | 1H nuclear magnetic resonance study of the solution conformation of an antibacterial protein, sapecin. FEBS Lett., 269, 1990
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2D7E
| Crystal structure of N-terminal domain of PriA from E.coli | Descriptor: | Primosomal protein N' | Authors: | Sasaki, K, Ose, T, Maenaka, K, Masai, H, Kohda, D. | Deposit date: | 2005-11-18 | Release date: | 2006-11-07 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | Structural basis of the 3'-end recognition of a leading strand in stalled replication forks by PriA. EMBO J., 26, 2007
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2D7H
| Crystal structure of the ccc complex of the N-terminal domain of PriA | Descriptor: | DNA (5'-D(P*CP*CP*C)-3'), Primosomal protein N' | Authors: | Sasaki, K, Ose, T, Maenaka, K, Masai, H, Kohda, D. | Deposit date: | 2005-11-21 | Release date: | 2006-11-07 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (3 Å) | Cite: | Structural basis of the 3'-end recognition of a leading strand in stalled replication forks by PriA. EMBO J., 26, 2007
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2D7G
| Crystal structure of the aa complex of the N-terminal domain of PriA | Descriptor: | DNA (5'-D(P*AP*A)-3'), Primosomal protein N' | Authors: | Sasaki, K, Ose, T, Maenaka, K, Masai, H, Kohda, D. | Deposit date: | 2005-11-21 | Release date: | 2006-11-07 | Last modified: | 2024-03-13 | Method: | X-RAY DIFFRACTION (3.3 Å) | Cite: | Structural basis of the 3'-end recognition of a leading strand in stalled replication forks by PriA. EMBO J., 26, 2007
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2MLO
| Human CCR2 Membrane-Proximal C-Terminal Region (PRO-C) in a Membrane bound form | Descriptor: | MCP-1 receptor | Authors: | Esaki, K, Yoshinaga, S, Tsuji, T, Toda, E, Terashima, Y, Saitoh, T, Kohda, D, Kohno, T, Osawa, M, Ueda, T, Shimada, I, Matsushima, K, Terasawa, H. | Deposit date: | 2014-03-04 | Release date: | 2014-10-08 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | Structural basis for the binding of the membrane-proximal C-terminal region of chemokine receptor CCR2 with the cytosolic regulator FROUNT. Febs J., 281, 2014
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2MLQ
| Human CCR2 Membrane-Proximal C-Terminal Region (PRO-C) in a frount bound form | Descriptor: | MCP-1 receptor | Authors: | Esaki, K, Yoshinaga, S, Tsuji, T, Toda, E, Terashima, Y, Saitoh, T, Kohda, D, Kohno, T, Osawa, M, Ueda, T, Shimada, I, Matsushima, K, Terasawa, H. | Deposit date: | 2014-03-04 | Release date: | 2014-10-08 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | Structural basis for the binding of the membrane-proximal C-terminal region of chemokine receptor CCR2 with the cytosolic regulator FROUNT. Febs J., 281, 2014
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5YCQ
| Unique Specificity-Enhancing Factor for the AAA+ Lon Protease | Descriptor: | Heat shock protein HspQ | Authors: | Abe, Y, Shioi, S, Kita, S, Nakata, H, Maenaka, K, Kohda, D, Katayama, T, Ueda, T. | Deposit date: | 2017-09-08 | Release date: | 2018-04-11 | Method: | X-RAY DIFFRACTION (2.503 Å) | Cite: | X-ray crystal structure of Escherichia coli HspQ, a protein involved in the retardation of replication initiation FEBS Lett., 591, 2017
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2V1T
| CRYSTAL STRUCTURE OF RAT TOM20-ALDH PRESEQUENCE COMPLEX | Descriptor: | ALDEHYDE DEHYDROGENASE, MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM20 HOMOLOG | Authors: | Obita, T, Igura, M, Ose, T, Endo, T, Maenaka, K, Kohda, D. | Deposit date: | 2007-05-29 | Release date: | 2007-06-12 | Last modified: | 2011-07-13 | Method: | X-RAY DIFFRACTION (1.92 Å) | Cite: | Tom20 Recognizes Mitochondrial Presequences Through Dynamic Equilibrium Among Multiple Bound States. Embo J., 26, 2007
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2V1S
| CRYSTAL STRUCTURE OF RAT TOM20-ALDH PRESEQUENCE COMPLEX | Descriptor: | ALDEHYDE DEHYDROGENASE, MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM20 HOMOLOG | Authors: | Obita, T, Igura, M, Ose, T, Endo, T, Maenaka, K, Kohda, D. | Deposit date: | 2007-05-29 | Release date: | 2007-06-12 | Last modified: | 2023-12-13 | Method: | X-RAY DIFFRACTION (2.05 Å) | Cite: | Tom20 Recognizes Mitochondrial Presequences Through Dynamic Equilibrium Among Multiple Bound States. Embo J., 26, 2007
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1UGN
| Crystal structure of LIR1.02, one of the alleles of LIR1 | Descriptor: | Leukocyte immunoglobulin-like receptor 1 | Authors: | Shiroishi, M, Rasubala, L, Kuroki, K, Amano, K, Tsuchiya, N, Tokunaga, K, Kohda, D, Maenaka, K. | Deposit date: | 2003-06-17 | Release date: | 2004-08-10 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Extensive polymorphisms of LILRB1 (ILT2, LIR1) and their association with HLA-DRB1 shared epitope negative rheumatoid arthritis. Hum.Mol.Genet., 14, 2005
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1UFU
| Crystal structure of ligand binding domain of immunoglobulin-like transcript 2 (ILT2; LIR-1) | Descriptor: | Immunoglobulin-like transcript 2 | Authors: | Shiroishi, M, Amano, K, Rasubala, L, Tsumoto, K, Kumagai, I, Kohda, D, Maenaka, K. | Deposit date: | 2003-06-10 | Release date: | 2004-08-10 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (3 Å) | Cite: | Kinetic and thermodynamic properties of the interaction between Immunoglobulin like transcript (ILT) and MHC class I To be Published
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1VSR
| VERY SHORT PATCH REPAIR (VSR) ENDONUCLEASE FROM ESCHERICHIA COLI | Descriptor: | PROTEIN (VSR ENDONUCLEASE), ZINC ION | Authors: | Tsutakawa, S.E, Muto, T, Jingami, H, Kunishima, N, Ariyoshi, M, Kohda, D, Nakagawa, M, Morikawa, K. | Deposit date: | 1999-02-13 | Release date: | 1999-10-27 | Last modified: | 2023-12-27 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Crystallographic and functional studies of very short patch repair endonuclease. Mol.Cell, 3, 1999
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1VDG
| Crystal structure of LIR1.01, one of the alleles of LIR1 | Descriptor: | Leukocyte immunoglobulin-like receptor subfamily B member 1 | Authors: | Shiroishi, M, Rasubala, L, Kuroki, K, Amano, K, Tsuchiya, N, Tokunaga, K, Kohda, D, Maenaka, K. | Deposit date: | 2004-03-22 | Release date: | 2005-08-02 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | Crystal structure of LIR1.03, one of the alleles of LIR1 To be Published
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1WOC
| Crystal structure of PriB | Descriptor: | Primosomal replication protein n | Authors: | Shioi, S, Ose, T, Maenaka, K, Abe, Y, Kohda, D, Katayama, T, Ueda, T. | Deposit date: | 2004-08-13 | Release date: | 2005-01-25 | Last modified: | 2012-12-05 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Crystal structure of a biologically functional form of PriB from Escherichia coli reveals a potential single-stranded DNA-binding site Biochem.Biophys.Res.Commun., 326, 2005
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6K8Q
| Solution structure of the intermembrane space domain of the mitochondrial import protein Tim21 from S. cerevisiae | Descriptor: | Mitochondrial import inner membrane translocase subunit TIM21 | Authors: | Bala, S, Shinya, S, Srivastava, A, Shimada, A, Kobayashi, N, Kojima, C, Tama, F, Miyashita, O, Kohda, D. | Deposit date: | 2019-06-13 | Release date: | 2019-09-11 | Last modified: | 2024-05-15 | Method: | SOLUTION NMR | Cite: | Crystal contact-free conformation of an intrinsically flexible loop in protein crystal: Tim21 as the case study. Biochim Biophys Acta Gen Subj, 1864, 2020
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6K7F
| Crystal structure of MBPholo-Tim21 fusion protein with a 17-residue helical linker | Descriptor: | Maltose/maltodextrin-binding periplasmic protein,Mitochondrial import inner membrane translocase subunit TIM21, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose | Authors: | Bala, S, Shimada, A, Kohda, D. | Deposit date: | 2019-06-07 | Release date: | 2019-09-18 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (1.8 Å) | Cite: | Crystal contact-free conformation of an intrinsically flexible loop in protein crystal: Tim21 as the case study. Biochim Biophys Acta Gen Subj, 1864, 2020
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6KNC
| PolD-PCNA-DNA (form B) | Descriptor: | DNA polymerase D DP2 (DNA polymerase II large) subunit, DNA polymerase II small subunit, DNA polymerase sliding clamp 1, ... | Authors: | Mayanagi, K, Oki, K, Miyazaki, N, Ishino, S, Yamagami, T, Iwasaki, K, Kohda, D, Morikawa, K, Shirai, T, Ishino, Y. | Deposit date: | 2019-08-05 | Release date: | 2020-08-05 | Last modified: | 2024-03-27 | Method: | ELECTRON MICROSCOPY (9.3 Å) | Cite: | Two conformations of DNA polymerase D-PCNA-DNA, an archaeal replisome complex, revealed by cryo-electron microscopy. Bmc Biol., 18, 2020
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6K7D
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6K7E
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6KNB
| PolD-PCNA-DNA (form A) | Descriptor: | DNA polymerase D DP2 (DNA polymerase II large) subunit, DNA polymerase II small subunit, DNA polymerase sliding clamp 1, ... | Authors: | Mayanagi, K, Oki, K, Miyazaki, N, Ishino, S, Yamagami, T, Iwasaki, K, Kohda, D, Morikawa, K, Shirai, T, Ishino, Y. | Deposit date: | 2019-08-05 | Release date: | 2020-08-05 | Last modified: | 2021-02-17 | Method: | ELECTRON MICROSCOPY (6.9 Å) | Cite: | Two conformations of DNA polymerase D-PCNA-DNA, an archaeal replisome complex, revealed by cryo-electron microscopy. Bmc Biol., 18, 2020
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