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PDB: 46 件
4WLC
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BU of 4wlc by Molmil
Structure of dextran glucosidase with glucose
分子名称: CALCIUM ION, GLYCEROL, Glucan 1,6-alpha-glucosidase, ...
著者Kobayashi, M, Kato, K, Yao, M.
登録日2014-10-07
公開日2015-08-26
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.402 Å)
主引用文献Structural insights into the catalytic reaction that is involved in the reorientation of Trp238 at the substrate-binding site in GH13 dextran glucosidase
Febs Lett., 589, 2015
4XB3
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BU of 4xb3 by Molmil
Structure of dextran glucosidase
分子名称: CALCIUM ION, Glucan 1,6-alpha-glucosidase, HEXAETHYLENE GLYCOL
著者Kobayashi, M, Kato, K, Yao, M.
登録日2014-12-16
公開日2015-08-26
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.093 Å)
主引用文献Structural insights into the catalytic reaction that is involved in the reorientation of Trp238 at the substrate-binding site in GH13 dextran glucosidase
Febs Lett., 589, 2015
2K6G
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BU of 2k6g by Molmil
Solution structure of the DNA binding BRCT domain from the large subunit of human Replication Factor C
分子名称: Replication factor C subunit 1
著者Kobayashi, M, Siegal, G, Ab, E, Bonvin, A.M.J.J.
登録日2008-07-09
公開日2009-09-22
最終更新日2024-05-29
実験手法SOLUTION NMR
主引用文献Solution structure of the DNA bound BRCT domain from human Replication Factor C p140
To be Published
2K7F
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HADDOCK calculated model of the complex between the BRCT region of RFC p140 and dsDNA
分子名称: 5'-D(P*DCP*DGP*DAP*DCP*DCP*DTP*DCP*DGP*DAP*DGP*DAP*DTP*DCP*DA)-3', 5'-D(P*DCP*DTP*DCP*DGP*DAP*DGP*DGP*DTP*DCP*DG)-3', Replication factor C subunit 1
著者Kobayashi, M, Ab, E, Bonvin, A, Siegal, G.
登録日2008-08-10
公開日2009-09-08
最終更新日2024-05-01
実験手法SOLUTION NMR
主引用文献Structure of the DNA-bound BRCA1 C-terminal region from human replication factor C p140 and model of the protein-DNA complex.
J.Biol.Chem., 285, 2010
1IV8
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BU of 1iv8 by Molmil
Crystal Structure of Maltooligosyl trehalose synthase
分子名称: MALTOOLIGOSYL TREHALOSE SYNTHASE
著者Kobayashi, M, Kubota, M, Matsuura, Y.
登録日2002-03-15
公開日2003-02-25
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Refined Structure and Functional Implications of Trehalose Synthase from Sulfolobus acidocaldarius
J.APPL.Glyosci., 50, 2003
2EIR
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BU of 2eir by Molmil
Design of Disulfide-linked Thioredoxin Dimers and Multimers Through Analysis of Crystal Contacts
分子名称: COPPER (II) ION, Thioredoxin 1
著者Kobayashi, M.
登録日2007-03-13
公開日2007-09-11
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Design of Disulfide-linked Thioredoxin Dimers and Multimers Through Analysis of Crystal Contacts
J.Mol.Biol., 372, 2007
2EIO
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Design of Disulfide-linked Thioredoxin Dimers and Multimers Through Analysis of Crystal Contacts
分子名称: Thioredoxin 1
著者Kobayashi, M.
登録日2007-03-13
公開日2007-09-11
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Design of Disulfide-linked Thioredoxin Dimers and Multimers Through Analysis of Crystal Contacts
J.Mol.Biol., 372, 2007
2EIQ
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Design of Disulfide-linked Thioredoxin Dimers and Multimers Through Analysis of Crystal Contacts
分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, COPPER (II) ION, Thioredoxin 1
著者Kobayashi, M.
登録日2007-03-13
公開日2007-09-11
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Design of Disulfide-linked Thioredoxin Dimers and Multimers Through Analysis of Crystal Contacts
J.Mol.Biol., 372, 2007
1EYS
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BU of 1eys by Molmil
CRYSTAL STRUCTURE OF PHOTOSYNTHETIC REACTION CENTER FROM A THERMOPHILIC BACTERIUM, THERMOCHROMATIUM TEPIDUM
分子名称: 2-O-octyl-beta-D-glucopyranose, BACTERIOCHLOROPHYLL A, BACTERIOPHEOPHYTIN A, ...
著者Nogi, T, Fathir, I, Kobayashi, M, Nozawa, T, Miki, K.
登録日2000-05-08
公開日2000-12-13
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structures of photosynthetic reaction center and high-potential iron-sulfur protein from Thermochromatium tepidum: thermostability and electron transfer.
Proc.Natl.Acad.Sci.USA, 97, 2000
7DNN
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BU of 7dnn by Molmil
Crystal structure of the AgCarB2-C2 complex with homoorientin
分子名称: 2-[3,4-bis(oxidanyl)phenyl]-6-[(2S,3R,4R,5S,6R)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]-5,7-bis(oxidanyl)chromen-4-one, AP_endonuc_2 domain-containing protein, AgCarC2, ...
著者Senda, M, Kumano, T, Watanabe, S, Kobayashi, M, Senda, T.
登録日2020-12-10
公開日2021-10-20
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Structural basis for the metabolism of xenobiotic C-glycosides by intestinal bacteria
Nat Commun, 2021
7DNM
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Crystal structure of the AgCarB2-C2 complex
分子名称: AP_endonuc_2 domain-containing protein, AgCarC2, IODIDE ION, ...
著者Senda, M, Kumano, T, Watanabe, S, Kobayashi, M, Senda, T.
登録日2020-12-10
公開日2021-10-20
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural basis for the metabolism of xenobiotic C-glycosides by intestinal bacteria
Nat Commun, 2021
1BQT
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BU of 1bqt by Molmil
THREE-DIMENSIONAL STRUCTURE OF HUMAN INSULIN-LIKE GROWTH FACTOR-I (IGF-I) DETERMINED BY 1H-NMR AND DISTANCE GEOMETRY, 6 STRUCTURES
分子名称: INSULIN-LIKE GROWTH FACTOR-I
著者Sato, A, Nishimura, S, Ohkubo, T, Kyogoku, Y, Koyama, S, Kobayashi, M, Yasuda, T, Kobayashi, Y.
登録日1998-08-18
公開日1999-05-18
最終更新日2022-02-16
実験手法SOLUTION NMR
主引用文献Three-dimensional structure of human insulin-like growth factor-I (IGF-I) determined by 1H-NMR and distance geometry.
Int.J.Pept.Protein Res., 41, 1993
3VMY
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BU of 3vmy by Molmil
Crystal Structure of a parallel coiled-coil dimerization domain from the voltage-gated proton channel (REDUCTION/DTT)
分子名称: Voltage-gated hydrogen channel 1
著者Fujiwara, Y, Takeshita, K, Kobayashi, M, Okamura, Y, Nakagawa, A.
登録日2011-12-19
公開日2013-01-30
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.47 Å)
主引用文献Crystal Structure of a Parallel Coiled-Coil Dimerization Domain from the Voltage-Gated Proton Channel (Reduction/Dtt)
To be Published
3VMX
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BU of 3vmx by Molmil
Crystal Structure of a parallel coiled-coil dimerization domain from the voltage-gated proton channel
分子名称: Voltage-gated hydrogen channel 1
著者Fujiwara, Y, Takeshita, K, Kobayashi, M, Okamura, Y, Nakagawa, A.
登録日2011-12-19
公開日2012-05-30
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (1.45 Å)
主引用文献The cytoplasmic coiled-coil mediates cooperative gating temperature sensitivity in the voltage-gated H(+) channel Hv1
Nat Commun, 3, 2012
3VN0
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BU of 3vn0 by Molmil
Crystal Structure of a parallel coiled-coil dimerization domain from the voltage-gated proton channel (mutation/C245S)
分子名称: Voltage-gated hydrogen channel 1
著者Fujiwara, Y, Takeshita, K, Kobayashi, M, Okamura, Y, Nakagawa, A.
登録日2011-12-19
公開日2013-01-30
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.37 Å)
主引用文献Crystal Structure of a Parallel Coiled-Coil Dimerization Domain from the Voltage-Gated Proton Channel (Mutation/C245S)
To be Published
1EYT
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BU of 1eyt by Molmil
CRYSTAL STRUCTURE OF HIGH-POTENTIAL IRON-SULFUR PROTEIN FROM THERMOCHROMATIUM TEPIDUM
分子名称: HIGH-POTENTIAL IRON-SULFUR PROTEIN, IRON/SULFUR CLUSTER
著者Nogi, T, Fathir, I, Kobayashi, M, Nozawa, T, Miki, K.
登録日2000-05-08
公開日2000-12-13
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Crystal structures of photosynthetic reaction center and high-potential iron-sulfur protein from Thermochromatium tepidum: thermostability and electron transfer.
Proc.Natl.Acad.Sci.USA, 97, 2000
1FMJ
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BU of 1fmj by Molmil
CRYSTAL STRUCTURE OF MERCURY DERIVATIVE OF RETINOL DEHYDRATASE IN A COMPLEX WITH RETINOL AND PAP
分子名称: ADENOSINE-3'-5'-DIPHOSPHATE, CALCIUM ION, MERCURY (II) ION, ...
著者Pakhomova, S, Kobayashi, M, Buck, J, Newcomer, M.E.
登録日2000-08-17
公開日2001-05-02
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献A helical lid converts a sulfotransferase to a dehydratase.
Nat.Struct.Biol., 8, 2001
1FML
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BU of 1fml by Molmil
CRYSTAL STRUCTURE OF RETINOL DEHYDRATASE IN A COMPLEX WITH RETINOL AND PAP
分子名称: ADENOSINE-3'-5'-DIPHOSPHATE, CALCIUM ION, RETINOL, ...
著者Pakhomova, S, Kobayashi, M, Buck, J, Newcomer, M.E.
登録日2000-08-17
公開日2001-05-02
最終更新日2024-02-07
実験手法X-RAY DIFFRACTION (2.75 Å)
主引用文献A helical lid converts a sulfotransferase to a dehydratase.
Nat.Struct.Biol., 8, 2001
4KLZ
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BU of 4klz by Molmil
Inhibition of Small GTPases by Stabilization of the GDP Complex, a Novel Approach applied to Rit1, a Target for Rheumatoid Arthritis
分子名称: GTP-binding protein Rit1, GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION
著者Shah, D.M, Kobayashi, M, Keizers, P.H, Tuin, A.W, Ab, E, Manning, L, Rzepiela, A.A, Andrews, M, Hoedemaeker, F.J, Siegal, G.
登録日2013-05-07
公開日2014-09-17
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Inhibition of Small GTPases by Stabilization of the GDP Complex, a Novel Approach applied to Rit1, a Target for Rheumatoid Arthritis
To be Published
1QBF
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BU of 1qbf by Molmil
NMR SOLUTION STRUCTURE OF PORCINE PEPTIDE YY
分子名称: PEPTIDE YY
著者Keire, D.A, Kobayashi, M, Solomon, T.E, Reeve Jr, J.R.
登録日1999-04-16
公開日2000-08-16
最終更新日2019-11-13
実験手法SOLUTION NMR
主引用文献Solution structure of monomeric peptide YY supports the functional significance of the PP-fold.
Biochemistry, 39, 2000
3WNO
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D308A mutant of Bacillus circulans T-3040 cycloisomaltooligosaccharide glucanotransferase complexed with cycloisomaltooctaose
分子名称: 1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, ...
著者Suzuki, N, Fujimoto, Z, Kim, Y.M, Momma, M, Kishine, N, Suzuki, R, Kobayashi, M, Kimura, A, Funane, K.
登録日2013-12-10
公開日2014-02-05
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structural elucidation of the cyclization mechanism of alpha-1,6-glucan by Bacillus circulans T-3040 cycloisomaltooligosaccharide glucanotransferase.
J.Biol.Chem., 289, 2014
3WNM
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D308A mutant of Bacillus circulans T-3040 cycloisomaltooligosaccharide glucanotransferase complexed with isomaltoheptaose
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, Cycloisomaltooligosaccharide glucanotransferase, ...
著者Suzuki, N, Fujimoto, Z, Kim, Y.M, Momma, M, Kishine, N, Suzuki, R, Suzuki, S, Kitamura, S, Kobayashi, M, Kimura, A, Funane, K.
登録日2013-12-10
公開日2014-02-05
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Structural elucidation of the cyclization mechanism of alpha-1,6-glucan by Bacillus circulans T-3040 cycloisomaltooligosaccharide glucanotransferase.
J.Biol.Chem., 289, 2014
3WNL
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D308A mutant of Bacillus circulans T-3040 cycloisomaltooligosaccharide glucanotransferase complexed with isomaltohexaose
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, Cycloisomaltooligosaccharide glucanotransferase, ...
著者Suzuki, N, Fujimoto, Z, Kim, Y.M, Momma, M, Kishine, N, Suzuki, R, Suzuki, S, Kitamura, S, Kobayashi, M, Kimura, A, Funane, K.
登録日2013-12-10
公開日2014-02-05
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Structural elucidation of the cyclization mechanism of alpha-1,6-glucan by Bacillus circulans T-3040 cycloisomaltooligosaccharide glucanotransferase.
J.Biol.Chem., 289, 2014
3WNK
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Crystal Structure of Bacillus circulans T-3040 cycloisomaltooligosaccharide glucanotransferase
分子名称: ACETATE ION, CADMIUM ION, CALCIUM ION, ...
著者Suzuki, N, Fujimoto, Z, Kim, Y.M, Momma, M, Kishine, N, Suzuki, R, Kobayashi, M, Kimura, A, Funane, K.
登録日2013-12-10
公開日2014-02-05
最終更新日2024-03-20
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural elucidation of the cyclization mechanism of alpha-1,6-glucan by Bacillus circulans T-3040 cycloisomaltooligosaccharide glucanotransferase.
J.Biol.Chem., 289, 2014
3WNN
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BU of 3wnn by Molmil
D308A mutant of Bacillus circulans T-3040 cycloisomaltooligosaccharide glucanotransferase complexed with isomaltooctaose
分子名称: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, Cycloisomaltooligosaccharide glucanotransferase, ...
著者Suzuki, N, Fujimoto, Z, Kim, Y.M, Momma, M, Kishine, N, Suzuki, R, Suzuki, S, Kitamura, S, Kobayashi, M, Kimura, A, Funane, K.
登録日2013-12-10
公開日2014-02-05
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Structural elucidation of the cyclization mechanism of alpha-1,6-glucan by Bacillus circulans T-3040 cycloisomaltooligosaccharide glucanotransferase.
J.Biol.Chem., 289, 2014

 

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