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PDB: 65 件
1J1G
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Crystal structure of the RNase MC1 mutant N71S in complex with 5'-GMP
分子名称: GUANOSINE-5'-MONOPHOSPHATE, Ribonuclease MC1
著者Numata, T, Suzuki, A, Kakuta, Y, Kimura, K, Yao, M, Tanaka, I, Yoshida, Y, Ueda, T, Kimura, M.
登録日2002-12-04
公開日2003-05-20
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal Structures of the Ribonuclease MC1 Mutants N71T and N71S in Complex with 5'-GMP: Structural Basis for Alterations in Substrate Specificity
Biochemistry, 42, 2003
1J1F
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Crystal structure of the RNase MC1 mutant N71T in complex with 5'-GMP
分子名称: GUANOSINE-5'-MONOPHOSPHATE, RIBONUCLEASE MC1
著者Numata, T, Suzuki, A, Kakuta, Y, Kimura, K, Yao, M, Tanaka, I, Yoshida, Y, Ueda, T, Kimura, M.
登録日2002-12-03
公開日2003-05-20
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal Structures of the Ribonuclease MC1 Mutants N71T and N71S in Complex with 5'-GMP: Structural Basis for Alterations in Substrate Specificity
Biochemistry, 42, 2003
1X0T
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Crystal structure of ribonuclease P protein Ph1601p from Pyrococcus horikoshii OT3
分子名称: Ribonuclease P protein component 4, ZINC ION
著者Kakuta, Y, Ishimatsu, I, Numata, T, Kimura, K, Yao, M, Tanaka, I, Kimura, M.
登録日2005-03-29
公開日2005-11-15
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal Structure of a Ribonuclease P Protein Ph1601p from Pyrococcus horikoshii OT3: An Archaeal Homologue of Human Nuclear Ribonuclease P Protein Rpp21(,)
Biochemistry, 44, 2005
1V9H
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Crystal structure of the RNase MC1 mutant Y101A in complex with 5'-UMP
分子名称: Ribonuclease MC, SULFATE ION, URIDINE-5'-MONOPHOSPHATE
著者Kimura, K, Numata, T, Kakuta, Y, Kimura, M.
登録日2004-01-26
公開日2004-10-05
最終更新日2024-10-16
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Amino acids conserved at the C-terminal half of the ribonuclease t2 family contribute to protein stability of the enzymes
Biosci.Biotechnol.Biochem., 68, 2004
1UCG
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Crystal structure of Ribonuclease MC1 N71T mutant
分子名称: MANGANESE (II) ION, Ribonuclease MC
著者Suzuki, A, Numata, T, Yao, M, Tanaka, I, Kimura, M.
登録日2003-04-14
公開日2003-04-29
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献Crystal structures of the ribonuclease MC1 mutants N71T and N71S in complex with 5'-GMP: structural basis for alterations in substrate specificity
Biochemistry, 42, 2003
1WN5
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Crystal Structure of Blasticidin S Deaminase (BSD) Complexed with Cacodylic Acid
分子名称: Blasticidin-S deaminase, CACODYLATE ION, ZINC ION
著者Kumasaka, T, Yamamoto, M, Furuichi, M, Nakasako, M, Kimura, M, Yamaguchi, I, Ueki, T.
登録日2004-07-27
公開日2005-10-25
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structures of blasticidin S deaminase (BSD): implications for dynamic properties of catalytic zinc
J.Biol.Chem., 282, 2007
1WN6
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Crystal Structure of Blasticidin S Deaminase (BSD) Complexed with Tetrahedral Intermediate of Blasticidin S
分子名称: 6-(4-AMINO-4-HYDROXY-2-OXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-3-[3-AMINO-5-(N-METHYL-GUANIDINO)-PENT ANOYLAMINO]-3,6-DIHYDRO-2H-PYRAN-2-CARBOXYLIC ACID, ARSENIC, Blasticidin-S deaminase, ...
著者Kumasaka, T, Yamamoto, M, Furuichi, M, Nakasako, M, Kimura, M, Yamaguchi, I, Ueki, T.
登録日2004-07-27
公開日2005-10-25
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structures of blasticidin S deaminase (BSD): implications for dynamic properties of catalytic zinc
J.Biol.Chem., 282, 2007
1J3A
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Crystal structure of ribosomal protein L13 from Pyrococcus horikoshii
分子名称: 50S ribosomal protein L13P
著者Nakashima, T, Tanaka, M, Kazama, T, Kawamura, S, Kimura, M, Yao, M, Tanaka, I.
登録日2003-01-21
公開日2003-02-04
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Crystal structure of ribosomal protein L13 from hyperthermophilic archaeon Pyrococcus horikoshii
To be Published
1IQ4
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5S-RRNA BINDING RIBOSOMAL PROTEIN L5 FROM BACILLUS STEAROTHERMOPHILUS
分子名称: 50S RIBOSOMAL PROTEIN L5
著者Nakashima, T, Yao, M, Kawamura, S, Iwasaki, K, Kimura, M, Tanaka, I.
登録日2001-06-13
公開日2001-06-27
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Ribosomal protein L5 has a highly twisted concave surface and flexible arms responsible for rRNA binding.
RNA, 7, 2001
1IZ6
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Crystal Structure of Translation Initiation Factor 5A from Pyrococcus Horikoshii
分子名称: Initiation Factor 5A
著者Yao, M, Ohsawa, A, Kikukawa, S, Tanaka, I, Kimura, M.
登録日2002-09-25
公開日2003-01-28
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal Structure of Hyperthermophilic Archaeal Initiation Factor 5A: A Homologue of Eukaryotic Initiation Factor 5A (eIF-5A)
J.BIOCHEM.(TOKYO), 133, 2003
1IQV
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Crystal Structure Analysis of the archaebacterial ribosomal protein S7
分子名称: RIBOSOMAL PROTEIN S7
著者Hosaka, H, Yao, M, Kimura, M, Tanaka, I.
登録日2001-08-07
公開日2001-08-29
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (2.1 Å)
主引用文献The structure of the archaebacterial ribosomal protein S7 and its possible interaction with 16S rRNA.
J.Biochem., 130, 2001
2CZW
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Crystal structure analysis of protein component Ph1496p of P.horikoshii ribonuclease P
分子名称: 50S ribosomal protein L7Ae
著者Fukuhara, H, Kifusa, M, Watanabe, M, Terada, A, Honda, T, Numata, T, Kakuta, Y, Kimura, M.
登録日2005-07-19
公開日2006-04-25
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献A fifth protein subunit Ph1496p elevates the optimum temperature for the ribonuclease P activity from Pyrococcus horikoshii OT3
Biochem.Biophys.Res.Commun., 343, 2006
1WMI
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Crystal structure of archaeal RelE-RelB complex from Pyrococcus horikoshii OT3
分子名称: hypothetical protein PHS013, hypothetical protein PHS014
著者Takagi, H, Kakuta, Y, Kamachi, R, Yao, M, Tanaka, I, Kimura, M.
登録日2004-07-09
公開日2005-03-15
最終更新日2024-03-13
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Crystal structure of archaeal toxin-antitoxin RelE-RelB complex with implications for toxin activity and antitoxin effects
Nat.Struct.Mol.Biol., 12, 2005
1IYB
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Crystal Structure of the Nicotiana glutinosa Ribonuclease NW
分子名称: GUANOSINE-5'-MONOPHOSPHATE, Ribonuclease
著者Kawano, S, Kakuta, Y, Kimura, M.
登録日2002-08-05
公開日2003-08-05
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Guanine binding site of the Nicotiana glutinosa ribonuclease NW revealed by X-ray crystallography
Biochemistry, 41, 2002
1VB5
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Crystal Structure Analysis of the Pyrococcus horikoshii OT3 translation initiation factor eIF-2B
分子名称: translation initiation factor eIF-2B
著者Kakuta, Y, Tahara, M, Maetani, S, Kimura, M.
登録日2004-02-22
公開日2004-12-07
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Crystal structure of the regulatory subunit of archaeal initiation factor 2B (aIF2B) from hyperthermophilic archaeon Pyrococcus horikoshii OT3: a proposed structure of the regulatory subcomplex of eukaryotic IF2B
Biochem.Biophys.Res.Commun., 319, 2004
1UCD
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Crystal structure of Ribonuclease MC1 from bitter gourd seeds complexed with 5'-UMP
分子名称: Ribonuclease MC, URACIL, URIDINE-5'-MONOPHOSPHATE
著者Suzuki, A, Numata, T, Yao, M, Kimura, M, Tanaka, I.
登録日2003-04-10
公開日2004-05-18
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.3 Å)
主引用文献Structure of RNase MC1 from bitter gourd seeds in complex with 5'UMP
To be published
1UCA
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Crystal structure of the Ribonuclease MC1 from bitter gourd seeds complexed with 2'-UMP
分子名称: PHOSPHORIC ACID MONO-[2-(2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-4-HYDROXY-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3-YL] ESTER, Ribonuclease MC
著者Suzuki, A, Yao, M, Tanaka, I, Numata, T, Kikukawa, S, Yamasaki, N, Kimura, M.
登録日2003-04-10
公開日2003-04-29
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.48 Å)
主引用文献Crystal structures of the ribonuclease MC1 from bitter gourd seeds, complexed with 2'-UMP or 3'-UMP, reveal structural basis for uridine specificity
Biochem.Biophys.Res.Commun., 275, 2000
1UCC
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Crystal structure of the Ribonuclease MC1 from bitter gourd seeds complexed with 3'-UMP.
分子名称: 3'-URIDINEMONOPHOSPHATE, Ribonuclease MC
著者Suzuki, A, Yao, M, Tanaka, I, Numata, T, Kikukawa, S, Yamasaki, N, Kimura, M.
登録日2003-04-10
公開日2003-04-29
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.77 Å)
主引用文献Crystal structures of the ribonuclease MC1 from bitter gourd seeds, complexed with 2'-UMP or 3'-UMP, reveal structural basis for uridine specificity
Biochem.Biophys.Res.Commun., 275, 2000
1VD1
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Crystal structure of RNase NT in complex with 5'-AMP
分子名称: ADENOSINE MONOPHOSPHATE, RNase NGR3
著者Kawano, S, Kakuta, Y, Kimura, M.
登録日2004-03-17
公開日2005-04-26
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal Structure of the Nicotiana glutinosa Ribonuclease NT in Complex with Nucleotide Monophosphates
to be published
1VCZ
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Crystal structure of the RNase NT in complex with 5'-GMP
分子名称: GUANOSINE-5'-MONOPHOSPHATE, RNase NGR3
著者Kawano, S, Kakuta, Y, Kimura, M.
登録日2004-03-17
公開日2005-04-26
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal Structure of the Nicotiana glutinosa Ribonuclease NT in Complex with Nucleotide Monophosphates
to be published
1VD3
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Ribonuclease NT in complex with 2'-UMP
分子名称: PHOSPHORIC ACID MONO-[2-(2,4-DIOXO-3,4-DIHYDRO-2H-PYRIMIDIN-1-YL)-4-HYDROXY-5-HYDROXYMETHYL-TETRAHYDRO-FURAN-3-YL] ESTER, RNase NGR3
著者Kawano, S, Kakuta, Y, Kimura, M.
登録日2004-03-18
公開日2005-04-26
最終更新日2024-10-30
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal Structure of the Nicotiana glutinosa Ribonuclease NT in Complex with Nucleotide Monophosphates
to be published
2CZV
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Crystal structure of archeal RNase P protein ph1481p in complex with ph1877p
分子名称: ACETIC ACID, Ribonuclease P protein component 2, Ribonuclease P protein component 3, ...
著者Kawano, S, Kakuta, Y, Nakashima, T, Tanaka, I, Kimura, M.
登録日2005-07-19
公開日2006-06-27
最終更新日2024-05-29
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal structure of protein Ph1481p in complex with protein Ph1877p of archaeal RNase P from Pyrococcus horikoshii OT3: implication of dimer formation of the holoenzyme
J.Mol.Biol., 357, 2006
2E2R
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Crystal structure of human estrogen-related receptor gamma ligand binding domain complex with bisphenol A
分子名称: 4,4'-PROPANE-2,2-DIYLDIPHENOL, Estrogen-related receptor gamma, GLYCEROL
著者Matsushima, A, Kakuta, Y, Teramoto, T, Koshiba, T, Kimura, M, Shimohigashi, Y.
登録日2006-11-16
公開日2007-09-11
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.6 Å)
主引用文献Structural Evidence for Endocrine Disruptor Bisphenol A Binding to Human Nuclear Receptor ERR{gamma}
J.Biochem.(Tokyo), 142, 2007
1V77
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Crystal structure of the PH1877 protein
分子名称: hypothetical protein PH1877
著者Takagi, H, Numata, T, Kakuta, Y, Kimura, M.
登録日2003-12-12
公開日2004-08-31
最終更新日2023-12-27
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structure of the ribonuclease P protein Ph1877p from hyperthermophilic archaeon Pyrococcus horikoshii OT3
Biochem.Biophys.Res.Commun., 319, 2004
2Z3I
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Crystal structure of blasticidin S deaminase (BSD) mutant E56Q complexed with substrate
分子名称: BLASTICIDIN S, Blasticidin-S deaminase, CACODYLATE ION, ...
著者Kumasaka, T, Yamamoto, M, Furuichi, M, Nakasako, M, Kimura, M, Yamaguchi, I, Ueki, T.
登録日2007-06-04
公開日2007-10-23
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal structures of blasticidin S deaminase (BSD): implications for dynamic properties of catalytic zinc
J.Biol.Chem., 282, 2007

 

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