4QNU
| Crystal structure of CmoB bound with Cx-SAM in P21212 | Descriptor: | (2S)-4-[{[(2S,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl}(carboxylatomethyl)sulfonio] -2-ammoniobutanoate, PHOSPHATE ION, tRNA (mo5U34)-methyltransferase | Authors: | Kim, J, Toro, R, Bhosle, R, Almo, S.C, New York Structural Genomics Research Consortium (NYSGRC) | Deposit date: | 2014-06-18 | Release date: | 2014-09-17 | Last modified: | 2024-02-28 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | Determinants of the CmoB carboxymethyl transferase utilized for selective tRNA wobble modification. Nucleic Acids Res., 43, 2015
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7EQJ
| crystal structure of E. coli Valine tRNA | Descriptor: | MAGNESIUM ION, RNA (76-MER), SODIUM ION | Authors: | Kim, J, Jeong, H. | Deposit date: | 2021-05-03 | Release date: | 2022-01-19 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2.043 Å) | Cite: | Unique anticodon loop conformation with the flipped-out wobble nucleotide in the crystal structure of unbound tRNA Val . Rna, 27, 2021
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4GRA
| Crystal structure of SULT1A1 bound with PAP | Descriptor: | ADENOSINE-3'-5'-DIPHOSPHATE, Sulfotransferase 1A1 | Authors: | Kim, J, Cook, I, Wang, T, Falany, C.N, Leyh, T.S, Almo, S.C. | Deposit date: | 2012-08-24 | Release date: | 2013-01-16 | Last modified: | 2023-09-13 | Method: | X-RAY DIFFRACTION (2.56 Å) | Cite: | The gate that governs sulfotransferase selectivity. Biochemistry, 52, 2013
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6L5H
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4IFB
| Crystal structure of SULT 2A1 LLGG mutant with PAPS | Descriptor: | 3'-PHOSPHATE-ADENOSINE-5'-PHOSPHATE SULFATE, Bile salt sulfotransferase, PHOSPHATE ION, ... | Authors: | Kim, J, Toro, R, Bhosle, R, Cook, I, Wang, T, Falany, C.N, Leyh, T.S, Almo, S.C. | Deposit date: | 2012-12-14 | Release date: | 2013-02-06 | Last modified: | 2023-09-20 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Sulfotransferase Selectivity at the Molecular level To be Published
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6L5J
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4KDZ
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5ZIQ
| Crystal structure of hexacoordinated heme protein from anhydrobiotic tardigrade at pH 4 | Descriptor: | 1,2-ETHANEDIOL, Globin protein, PROTOPORPHYRIN IX CONTAINING FE, ... | Authors: | Kim, J, Fukuda, Y, Inoue, T. | Deposit date: | 2018-03-16 | Release date: | 2019-01-02 | Last modified: | 2024-03-27 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | Crystal structure of Kumaglobin: a hexacoordinated heme protein from an anhydrobiotic tardigrade, Ramazzottius varieornatus. FEBS J., 286, 2019
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5ZM9
| Crystal structure of hexacoordinated heme protein from anhydrobiotic tardigrade at pH 7 | Descriptor: | CHLORIDE ION, Globin Protein, PROTOPORPHYRIN IX CONTAINING FE | Authors: | Kim, J, Fukuda, Y, Inoue, T. | Deposit date: | 2018-04-02 | Release date: | 2019-01-02 | Last modified: | 2024-03-27 | Method: | X-RAY DIFFRACTION (2.7 Å) | Cite: | Crystal structure of Kumaglobin: a hexacoordinated heme protein from an anhydrobiotic tardigrade, Ramazzottius varieornatus. FEBS J., 286, 2019
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3OCQ
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3ODG
| crystal structure of xanthosine phosphorylase bound with xanthine from Yersinia pseudotuberculosis | Descriptor: | CHLORIDE ION, XANTHINE, Xanthosine phosphorylase | Authors: | Kim, J, Ramagopal, U.A, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC) | Deposit date: | 2010-08-11 | Release date: | 2010-08-25 | Last modified: | 2023-09-06 | Method: | X-RAY DIFFRACTION (1.64 Å) | Cite: | crystal structure of xanthosine phosphorylase bound with xanthine from Yersinia pseudotuberculosis To be Published
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2OB3
| Structure of Phosphotriesterase mutant H257Y/L303T | Descriptor: | 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Parathion hydrolase, ZINC ION | Authors: | Kim, J, Ramagopal, U.A, Tsai, P, Raushel, F.M, Almo, S.C. | Deposit date: | 2006-12-18 | Release date: | 2007-01-30 | Last modified: | 2023-11-15 | Method: | X-RAY DIFFRACTION (1.04 Å) | Cite: | Structure of Phosphotriesterase mutant H257Y/L303T To be Published
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2O4M
| Structure of Phosphotriesterase mutant I106G/F132G/H257Y | Descriptor: | ACETIC ACID, CACODYLATE ION, GLYCEROL, ... | Authors: | Kim, J, Ramagopal, U.A, Tsai, P, Raushel, F.M, Almo, S.C. | Deposit date: | 2006-12-04 | Release date: | 2007-12-18 | Last modified: | 2023-11-15 | Method: | X-RAY DIFFRACTION (1.64 Å) | Cite: | Structure of Phosphotriesterase mutant I106G/F132G/H257Y To be Published
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2O4Q
| Structure of Phosphotriesterase mutant G60A | Descriptor: | CACODYLATE ION, Parathion hydrolase, ZINC ION | Authors: | Kim, J, Ramagopal, U.A, Tsai, P.C, Raushel, F.M, Almo, S.C. | Deposit date: | 2006-12-04 | Release date: | 2007-12-18 | Last modified: | 2023-11-15 | Method: | X-RAY DIFFRACTION (1.95 Å) | Cite: | Structure of diethyl phosphate bound to the binuclear metal center of phosphotriesterase. Biochemistry, 47, 2008
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3OF3
| Crystal structure of PNP with an inhibitor DADME_immH from Vibrio cholerae | Descriptor: | 7-[[(3R,4R)-3-(hydroxymethyl)-4-oxidanyl-pyrrolidin-1-ium-1-yl]methyl]-3,5-dihydropyrrolo[3,2-d]pyrimidin-4-one, PHOSPHATE ION, Purine nucleoside phosphorylase deoD-type 1 | Authors: | Kim, J, Ramagopal, U.A, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC) | Deposit date: | 2010-08-13 | Release date: | 2010-09-01 | Last modified: | 2023-09-06 | Method: | X-RAY DIFFRACTION (1.83 Å) | Cite: | Crystal structure of PNP with an inhibitor DADME_immH from Vibrio cholerae To be Published
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3OCC
| Crystal structure of PNP with DADMEimmH from Yersinia pseudotuberculosis | Descriptor: | 7-[[(3R,4R)-3-(hydroxymethyl)-4-oxidanyl-pyrrolidin-1-ium-1-yl]methyl]-3,5-dihydropyrrolo[3,2-d]pyrimidin-4-one, PHOSPHATE ION, Purine nucleoside phosphorylase deoD-type | Authors: | Kim, J, Ramagopal, U.A, Burley, S.K, Almo, S.C, New York SGX Research Center for Structural Genomics (NYSGXRC) | Deposit date: | 2010-08-09 | Release date: | 2010-11-10 | Last modified: | 2023-09-06 | Method: | X-RAY DIFFRACTION (1.7 Å) | Cite: | crystal structure of PNP with DADMEimmH from Yersinia pseudotuberculosis To be Published
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3OHP
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3PVC
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3PS9
| Crystal structure of MnmC from E. coli | Descriptor: | CHLORIDE ION, FLAVIN-ADENINE DINUCLEOTIDE, S-ADENOSYLMETHIONINE, ... | Authors: | Kim, J, Almo, S.C. | Deposit date: | 2010-12-01 | Release date: | 2010-12-22 | Last modified: | 2024-02-21 | Method: | X-RAY DIFFRACTION (2.54 Å) | Cite: | Structural basis for hypermodification of the wobble uridine in tRNA by bifunctional enzyme MnmC. Bmc Struct.Biol., 13, 2013
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3RCM
| crystal structure of EFI target 500140:TatD family hydrolase from Pseudomonas putida | Descriptor: | ACETATE ION, CITRIC ACID, TatD family hydrolase, ... | Authors: | Kim, J, Toro, R, Hillerich, B, Seidel, R.D, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI) | Deposit date: | 2011-03-31 | Release date: | 2011-04-20 | Last modified: | 2018-01-24 | Method: | X-RAY DIFFRACTION (2.05 Å) | Cite: | crystal structure of EFI target 500140:TatD family hydrolase from Pseudomonas putida TO BE PUBLISHED
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3SGL
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1K5U
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1K5V
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5X06
| DNA replication regulation protein | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, DNA polymerase III subunit beta, DnaA regulatory inactivator Hda, ... | Authors: | Kim, J, Cho, Y. | Deposit date: | 2017-01-20 | Release date: | 2018-01-24 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (3.237 Å) | Cite: | Replication regulation protein To Be Published
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5ZW3
| Crystal Structure of TrmR from B. subtilis | Descriptor: | MAGNESIUM ION, Putative O-methyltransferase YrrM, S-ADENOSYL-L-HOMOCYSTEINE | Authors: | Kim, J, Ryu, H, Almo, S.C. | Deposit date: | 2018-05-14 | Release date: | 2018-07-11 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (2.27 Å) | Cite: | Identification of a novel tRNA wobble uridine modifying activity in the biosynthesis of 5-methoxyuridine. Nucleic Acids Res., 46, 2018
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